RNA id: LOC118956210


Basic Information

Item Value
RNA id LOC118956210
length 1155
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC118956210
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24910984 ~ 24938701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCAGCGCTGTCGACTAGGGCCTAAAGAATGTGTGTTTCAAAAGCCCCATGGCCCCATTTCACTGTCTCCATTGGCTGGGTAGTCCCCGTCTCATCTGTGGCCCCTTCTCGGTCTCAACAAGCGTCTCACAAGCGTGATGCAGAAGTTCGAATGTGTGCATCTCAGGTTGTGAAGGTGTTGCGGAAGTTCAAATGTGTGCGTCTTAAGTCGTAGTGTCACTAGCTCTGTCACTAGTATCTTAGCTCTGGAGTTCCCAGAGCGCATGTTGGATCACAGCTTGCCTGCTGCACATGAAGTCCGCGGTCTCACCACTGTGCCTCTGCAGATCTTCATCAACCACCAGCTGCGGGTCCTGGATGGGCGCACTGTTAACCTGTTCTTGACGATACATTTTTCTTCCGAATCGAGAACGAAGAAAGTATCTTAAAAAACTGTGTTCGGCCTGAATGAGAAGGCAGAGCCTGTGACCTGGCAAGTGAGCGGGTGGCCCGCACGCATCCTGCAGCTTGAGATGGATCACTTGGATGGAGTCCGGTACATTGACCGCATGGACAGTAAAACCTTCAACGTGAAATGGGCAGCACAGAACGAGTAGCAGTTTCAAACTAACCTTGTCACCCTGATTGAGCACTAAGACAACTTCTTGGACATAATATACAACAGACCATGAAGAAACCTTTCTTACTGATTCTTtattaataaatatatttatgaATCCAGATTTGTAGTCTGAATGAATATTGAATTATCTTGCAAGTTGTTTCAAATGTCCACAAACAGAGCTAAAATATTGACTCAACTGTGGACTGTCACCCGAGTGGTATACTACGACGCTAGGTTttctaaagctagctagcttcacattacagctcaggcttcatccgtATTACGACAGTGGATATTGCTCATCCGGCGTGTGCATGTCGCACATCGTACTCATTGAGACAATACTAAAACGTCCATCCTTGGGCGATTTCATCTTAGCAGGCTGTGGTGTGAAATAGGCAATTAGAAGTTCTGTATTTTATGCTGTCATTGGTGTGCACAATTGTATGAAGTCATACAAGTTTTACTGTGCGTGAAGTTTAAAATTCATCCTGTCTTTACTAAATGTAATGTTATAGGTATTTTAATTACTTTCTTTACAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28754 lncRNA downstream 13157 24897610 ~ 24897827 (-) True G24942
TU28752 lncRNA downstream 13997 24896772 ~ 24896987 (-) True G24940
TU28725 lncRNA downstream 53438 24857246 ~ 24857546 (-) True G24917
TU28723 lncRNA downstream 55365 24855391 ~ 24855619 (-) True G24915
TU28650 lncRNA downstream 76395 24831392 ~ 24834589 (-) True G24851
TU28799 lncRNA upstream 5972 24918667 ~ 24962734 (-) True G24972
TU28787 lncRNA upstream 15653 24928348 ~ 24938701 (-) False LOC118956210
TU28790 lncRNA upstream 15653 24928348 ~ 24938701 (-) False LOC118956210
TU28791 lncRNA upstream 15653 24928348 ~ 24938701 (-) False LOC118956210
TU28792 lncRNA upstream 15653 24928348 ~ 24938701 (-) False LOC118956210
XM_021595703.2 mRNA downstream 5340 24898911 ~ 24905644 (-) True LOC110517792
XM_021595392.2 mRNA downstream 45826 24853824 ~ 24865158 (-) False znf276
XR_002472482.2 mRNA downstream 91741 24808572 ~ 24819243 (-) True cdk10
XM_021595131.2 mRNA downstream 91745 24808572 ~ 24819239 (-) False cdk10
NM_001165109.1 mRNA downstream 199522 24697687 ~ 24711462 (-) True gbrl2
LOC110518671 mRNA upstream 37139 24949834 ~ 24953314 (-) False LOC110518671
XR_005046131.1 mRNA upstream 99486 25012181 ~ 25020388 (-) True LOC118956655
XM_036974229.1 mRNA upstream 131750 25044445 ~ 25083238 (-) True LOC110519016
XM_021596479.2 mRNA upstream 176601 25089296 ~ 25108874 (-) False LOC110519226
XM_036974277.1 mRNA upstream 176602 25089297 ~ 25112229 (-) False LOC110519226
TU28721 other downstream 46150 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 357422 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 684494 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 1084493 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 1286635 23624026 ~ 23624349 (-) True G23394
TU28795 other upstream 15653 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 32213 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 367897 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 368909 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2723393 27636088 ~ 27643120 (-) True LOC110520292

Expression Profile