RNA id: XM_021596479.2


Basic Information

Item Value
RNA id XM_021596479.2
length 2898
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110519226
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25089296 ~ 25112992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTAATGCTACTGTGAATTGGGACGCACCCTGTTCTTTGTCTatgtctagctagctagcggtAAAGTAGGTTACTATTATAACGTACACAATGTCCACCTCTGATCCAGTGGTTAGCGCTGCAGGTTCGGTGGTATCGGACCCTCAACACTCTCAGAAACTTCTCAAGGCCCTTCGCTCATTCTGGATAGAACAATGCTTCCAAGACGCAGTGTTAGTACTGGAAGGGGAAAAGATTCCAGTCCAGAAAAACATTTTGGCTGCGGCTAGTCCATATATCAGAACAAAGCTGAACTACAACCCTCCAAAGGAAGATGGATCCATGTACACCATTGAGCTCCAGGGAATCTCTGTCACTATCATGAAGCAGATCTTGGACTACATCTTTAGTGGGGAGATCAGTCTGAGTGAGGACACCATTCAGGACATGGTCCAGGCCGCTGACCTGCTGCTCTTGACAGACCTGAAGTCCCTGTGCTGCCAGTTCCTGGAGAGCTGCATTGCTGCAGAGAACTGCATTGGGATCCGGCTTTTCTCTCTACATTACTGCCTTCACCATGTTCACCATGCTGCCACAGACTTCCTTCAGACACATTTCTGTGATGTGGCCGTCACAGAGGAGTTTAGGGAGTTACCTCCAGACCGGCTGTGCGAGATCCTGTCGATGGACAAGCTCAACGTGGGCAATGAGAAACATGTCCTGGAGGCTGTGGTGCGCTGGCTTGGCCATGACCTGGAGGAACGGAGGgtGCACATGAAAGAGGTGATGTCATCGGTGTGGATCCAGGGGCTGGACCAGGGTTACCTGAGGGAGCAGATGTTAGGAGAGCCCTTGATGAGGGAGGTGATCCGGGAGTACTGCAACGCTCCACTGGGGGGCGCAACACTGCAGGGCGAGGCTCTTTTAGCCGCCTTCAAACCTCGTGGCTACTCGGAGTGCATTGTCACTgtagggggggaggagagagtAACGAGGAAGCCGTCAGCCATGATACGCTGCATGTGTCCACTCTATGACCCAAACCGCCAGCTGTGGATCGAGCTGGAACCAATGAGCATTGGGCGAATAGGGCATGGGGTGCTGGCAGCAGAGGGCCATCTCTTTGTGATGGGTGGCATGGATGAAACCAAGACAGTCCTGAGCAGTGGAGAGAAATATGACCCAAACACAAACACTTGGACCCCCATTCCTTCCATGAAACAGGCGAGGCAGAACTTTGGTGTTGCTGAGCTGGATGGGATGATCTATGTgttgggaggagaggaagaggacatgGAGCTCCTGACTGTGGAGGTGTTCGACCCTCACTACAACACCTGGACAACCCAAACCAGCATGACCATGGTCCGCAAGGTTGGCTGCTATGCCACCATGAAAAAGAAGATCTATGCCATGGGTGGTGGGTCATATGGAAAGCTGTACGACTCAGTAGAATCTTATGATCCAAAGACCCAGCAGTGGACTGCAATCTGCCCTTTGAAAGAGAGAAGGTTTGGCTCAGTGGCGTGTGGTGTGGGTCAGGAGCTCTATGTGTTTGGAGGTGTGAGGAGCCGTGACTCAGACAACCCAGAATCCAGCACCATGACCACCTGCAAGTCCGAGTTTTTCCATGATGAGATGAAAAGATGGATATACCTGGACGACCAGAATCTCTGTGTTCAGACCAGTTCCTCCTTTGTGTATGGAGCTGTCCCCATTGGAGTCAGCATTTATGTGGTGGGAGACCTAGACACTGGTACAACCTATGACTATGTGAGGGAATTCCGTCGCAGCTCGGGGACGTGGCACCGCACCAAGCCCATGCTGACATCTGATCTGTGCAAGACGGGCTGTGCAGCCCTGCGCATCGCTAACTGCAAACTGTTCCGTCTGCAGCTGAAGCAGGGCCTGTTTAGACACAGGGTCCCATCGTCATAGAAAGCACCTAAAGGAGTGGCATTGTCTCCACATCTTTTGGCTTTGGGCACAGCAATGGGACATAAGAATGGAGGTTGAAGAAGGGACCCTCCAATGGGGATGTTTGGAGTATTTATCTGCATATTTTGCTGACTTTCTTAGGGTTCATGAGGGTATTGTATGTGCGATCTTGCTTGAAGAGGGATCACTTTTTAAACATGGCCTTATTTCATTGCAATTTAACAGTGGGAATGATTTGTAAATACATTTTACTGACATTCCCCATTTGCTTTTTATGTTTACTACATTTTTGCTGCTGCTTGGTGGGTTTTAGAGAATGTAACACTATTTTTAAGGGGTGAAAAGGAAGaattacattttagcagacacgcttatccagagccacttacaggaacaattagattaaagtgccttgttcaagggcacatctacaaatttttcacctagtcggctcgggaatttaaaccagcgacctttcacttaaccactaggctccctgccgccTAGTAGTACTGTAATTTGTAATCACTTAGCCTGTCATTTTTAAGGAAAATCTAGACCCATGTCtaacactgtattttttttgttatgaGTCAGTGAATGTCAACTAGAGATGCATAACTAGATTCACAAAAGGACAAATGCTGTTTTTGGCCTATGACAACTAGAGATACACAAGGAGACTTATAAAATAACATGTGGTTTTAGTTGTTCCCTTAGCTAAGGGACTTGTGGCCTATAAAATAATCTTTACTCAAAATCTTAACTTAAAATAGACTGTCTAAATAGACAGTTTATAGTGCTTAATGCCAAAAGCTGGAGCATAGCACATATTTCAATGGttactggtgatatactgtatacactgagtgtataaaacattaggaacacctgctctttccacgacagactgaccaggtgaaagctatgatcccttattgatgtcacctgttaaatccacttcaataagtgtagatgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28772 lncRNA downstream 41 25088662 ~ 25089255 (-) True G24954
TU28770 lncRNA downstream 1941 25086074 ~ 25087355 (-) True G24952
TU28853 lncRNA downstream 22370 25065890 ~ 25066926 (-) True G25011
TU28765 lncRNA downstream 45120 25042903 ~ 25044176 (-) True G24948
TU28757 lncRNA downstream 46527 25041560 ~ 25042769 (-) True G24945
TU28764 lncRNA upstream 1571 25110445 ~ 25111181 (-) False LOC110519226
TU28766 lncRNA upstream 2444 25111318 ~ 25112992 (-) True LOC110519226
TU28868 lncRNA upstream 5056 25113930 ~ 25114287 (-) True G25026
TU28872 lncRNA upstream 15128 25124002 ~ 25124227 (-) True G25030
TU28775 lncRNA upstream 29511 25138385 ~ 25140692 (-) True G24957
XM_036974229.1 mRNA downstream 6058 25044445 ~ 25083238 (-) True LOC110519016
XR_005046131.1 mRNA downstream 68908 25012181 ~ 25020388 (-) True LOC118956655
LOC110518671 mRNA downstream 135982 24949834 ~ 24953314 (-) False LOC110518671
LOC118956210 mRNA downstream 176601 24910984 ~ 24912695 (-) False LOC118956210
XM_021595703.2 mRNA downstream 183652 24898911 ~ 24905644 (-) True LOC110517792
XM_021596672.2 mRNA upstream 45851 25154725 ~ 25172551 (-) False kiaa0513
XM_021596711.2 mRNA upstream 45851 25154725 ~ 25172551 (-) False kiaa0513
XM_021596802.2 mRNA upstream 45851 25154725 ~ 25172551 (-) False kiaa0513
XM_021596811.2 mRNA upstream 45851 25154725 ~ 25172551 (-) False kiaa0513
XM_021596821.2 mRNA upstream 45851 25154725 ~ 25172551 (-) False kiaa0513
TU28762 other downstream 137909 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 150595 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 224462 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 535734 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 862806 24222907 ~ 24226490 (-) True G24542
TU28960 other upstream 171718 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 172730 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2527214 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 2948569 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 2948569 28057443 ~ 28066305 (-) True G28870

Expression Profile