RNA id: XM_021596711.2


Basic Information

Item Value
RNA id XM_021596711.2
length 4265
RNA type mRNA
GC content 0.45
exon number 14
gene id kiaa0513
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25154725 ~ 25172586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCCCCACTTTACAGTCGTGCTTGATTGCGCATGCCTGTTTTGAGACTACTGAAGTGAGCAGGATCCGACGCATACAGGGAAGACTAAACCCCTCATCAACCTGGGACATTTCATATTCAAGTTGTTGTGAGATGATGCACCAAAGAAACAAACAGCCATGTGAAAAGAACAATGAGCTATGTGAAATGCCTACTTTGCAAAGAAAACCGAATTTTGCCTACCAAATTGGAtGTGCAATGGGTGTGTGGGCATTGAGTCCATTCTGCTACAGCGCCCCTCGTGGATGAGAGCGTCTGAAGAGCCTTCTCCTGTCTACTTTAGCTCTGccatctctgttctctgtcctcaACAATGGAGGGGGTAGCTGTGGAAAACCTCATAGACTTTGATATCCCTTCATGTTCAGACGATACAGCCCCCTCATTTGCAAGTCCTCCTAGTGGGGCGCTGCTCCATACAGACATTTTCTCCTCTGAGCCGCTGTTCCAAGAGCCTGCCTCCATTGTTCTCCTGGAGCCACGGTTGCCTGATCCCCTGGCCCCCATGCCCAGCTCCCACCACCATTGTgggggagaggacagggacagTGATGCCACAGAGTCGGCAGACAGTGAGAATGACATGGACCCACACTCCCAGCAGTGGAACTCACGGCACTCATCCTCCTCGTCCAATCACAGCGCAGAGCTTGGGATAGAGGCAGTGGAGAATCAGGAGTTCATGAAAGCTTACGTGGAGATGGTGTTTCATGGAAAGGAGGACTTTGACCAGGAGGAGAAGGCTCGCTTTGGGGAGCTGTGCAGTGGAGAAAATGGCAAGGGTAGGGAGTGGTTTGCCAGATACGTCAGTGCACAGCGCTGCAACTCCAAGTGTGTGAGTGAAGCAACATTCTACAGGCTGGTGCAGTCTTTTGCAGTTGTTCTTTTCGAgtgcTATCAGATGGATGACTACAGTCCAGCTAAAAACCTCATGACCATGTGTTTCACTTACTACCACACTGGTAAGTCCCAGCCATCCCCCACTGAGCTGCTGCAGCAGCCGCCTGTAGCCATGGACTCCTACCTGAATAAGGCCAACTCCTGGCTTTCTGGCAAGAAGGACGCAGCCGGGCGGCTCCTGAAGAACTCCTCTGCTGCCAAAACGGAAGTCAAAGGCTTCTTTGGAGGCCTGGAGAGCAAGCTGAGAGCGTCCGCTCGAAAGAATGAGGAGGCAGAGAGTCCAGTCGAGGTAAAGCCCAAATCACCAGTGTCCTCTGTGCCTCCAGAGAAGAAGAAAGTAGAGAACGAGAAGGTGTACCTGTACACACACCTGAAACAGCAACCTATCTGGCATACGTTGAGGTTTTGGAACGCCGCGTTCTTTGATGCGGTCCACTGTGAGAGGAAGAAGAGGTCACCTACCACCAGGGGGACggatgaggaagagaaagacGAGAGAGAGAAGTGGTGTCATATGACCCAGGAAGAGAAAGATGACAGCTCTAAAGTCGACGAGAATATTGCCTTTGGCCAACTGGGGACATTCACTCACAACATGCTGGCTTTTGGGCTCAGTAAGAAACTCTGCAATGACTTCCTGAAGAAGCAAGCAGTTATTGGGAACCTAAATGAAGAGCAGTACAAGCTGTTGAGCGACCACATTGAGCAGATGGCCACAGAGTGAGTGGCAAAGAATGGTTCTTCAATGACTACTTAGTACACTATCAATAGTAATTAGCTGAAGCTaatctcctcctcactctccaaTGTTGTGAAGGCTCACCAATAACTGTATTCCATCAATATCCAGTACAGTAAACTCAAATCACCTATTTTAGGAAAGCCTCCATAACCTGCAACAATAAATAACACAAAACCTTTTATTACAGTGATAGTAAACATGAAGCTGCATAGTCAATATTCCAGCTTCACCAACCAACATACtgtaacctaccctctcctgGGCACTGTCAACAAGGTCATTCACCCTATCACTACTACATTATTTTATACTGTCACTAATGAGTACCTTCCTCAGGTCCTTATTTTACTGTATAGTTGGACAATTTCAGCCATATCAGCGTCCATTAACCCATTTTACATAATCAGCTCCGTGTAACCGGCCCAGGCTCTCTATAGCCTTTTTCATGTCCCCTgactacagtatacatacagaatatatattttagatataCTGTAACCTGCTCCTTGCACATATCCTACAATtagtattatttatattttttgcaaTAGTGACCTTTTATGATTTCCTCTCTGCCCAATGTCGAAGTGCCTTGAATGTACCCGTGGGGAACTGTCCTTTCTGTTTCAATGGTAATCAATGCAAGTCTCAATTGTAACAATCTGTAAAACCACTTGATACAATGTCCTCCTGTTCATGATTCTACCATCTATATACTGTGTCAGCATATTTCCAATAAGGTCGAATTCTCATGCTCAGTGTCCTCTGTGTTTAGTGATTGTCATGGTGTTAGATCATGGCTAGTTAAAGTGCAGTGTGTCGTGGTGAGAGGCTGCAGCATGACTTCCAGCAGCAGTCCCATACTTTCTGTTTCATTCCTAGAGTAGCCGTGACCTGAGGTGTCTGTGCTATATGCCTGGCATGCATCCTTGCCCTTTATAAGTGAGAAACGAGCATTGTGCAAGTTGGGCATCGTGCAGCAAGGGCGTCAATGTCTTGTTTGCATTATTTAAGCCCACCAGAGGGAAGCCTGGTGACTTGTTCAGAGCACTTAATTTATCAATGGAGTTAAAAGTTTCAAAACTGTGTGGATCCAGCTTTTGAGGGAGATGTCAAGAATGATATATTTTGCTTACATCTCGGAGCATTGACATTTCAGAGCTATGTGAATAGGAATTAGGATTATTGTACATTTTTCTCAATGCTGGATTGAAGTACTGGCaagtttatttatatatatatatattattttgtattaATCTATTGTCTATATCACTTGattttgtatttatattgtatttttttcacctatgttttattatgttcaaAGACTTGTTTATCACTGGCTTTGTGTCATATCTGTTGGTGAATGACTATGTAACTGATTATGGTCATTGTGTTTTGATGTCTTTCTCAATGGCAACTAAATCTTTCCCCTTATTAAGACCCTGAAGTGCCGTCATAATTCCTCCCTTAGGAGTGGTCCATTCAAGTGCTAAACCAAACTATATGTGTGCTATGTGTAAAATGTTTAGTATAAACTATTGGGTAattcctccagtgtgttagttaCGATGTGTAGTTAGTTGCATGTGATGCCTTGTAGTTGAAGTTCTATGTCTTGTCTTGGAgatgtcttgctctctctctcttttttcttgtGGGCTGTTTAGCAGAGGACTAGCTTCTTGCCACAAAGTGTCACTTGTGTtctgctctgtctctgttatttcCCTTGGATTGCAATGCTGCTCCCTGCTTCATGTCTGGATCTGACATTCTGTTCAGCAATCAGACATATTGTGCATCTGCATGTGATGACCTCAATTTCCATACTGCTGAATGACTTGCCTCTTTTGTTTTGTGGCTGTGAGCAGTTTTAGTTCAGCACCAAGCCCTCCTGGGTGTTTGTATTGCTGTGTGCAGTTTTAGTTTAGCACCAAGCCCTCCTGGGTGTTTGTATTGCTGTGTGCAGTTTTAGTTTAGCACCAAGCCCTCCTGGGTGTTTGTATTGCTGTGTGCAGTTTTAGTTTAGCACCAAGCCCTCCTGGGTGTTTGTATTGCAGTGTGCAGTTTTAGTTTAGCACCAAGCCCTCCTGGGTGTTTGTATTGCTGTGTGCAGTTTTAGTTTAGCACCAAGCCCTCCTGGGTGGTTGTATTGCAGTGTGCACTCTGGCCTTTCAGTATTGTTGAAATGCAGACCAGCCCTCTTAATACTTGGAATGCTTCGCCTGCTTTTCATGTTGCATGTCAAATGCATGTATGGTCCATCACTGGTCTTTAAGACATCTCTCATGAAAAGTGTTGTACATTGTTTGTCTGGGCAGTGGTGGTCTGATTTGACCAGTTGTAACTAGTACCTGATACCTAGTCATGGACAAGCCTTGTGTCTTTGGAGGTGAAACAAACTTAGCATAGGAGAATATAGCCAACCCTTCTTTTTAATGAGCGGGGGAAAGAGTCTCTTACAGGTAGCTGTAATGTCCTCCCACTTCTGTTGTGCAATGGTGGCTGAGTTTGCATGGATGTGTAATTATGATAGAACAAGTAGCTGATGctgtaataaatatatttttgaatgtG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28773 lncRNA downstream 251 25154266 ~ 25154474 (-) True G24955
TU28775 lncRNA downstream 14033 25138385 ~ 25140692 (-) True G24957
TU28872 lncRNA downstream 30498 25124002 ~ 25124227 (-) True G25030
TU28868 lncRNA downstream 40438 25113930 ~ 25114287 (-) True G25026
TU28766 lncRNA downstream 41733 25111318 ~ 25112992 (-) True LOC110519226
TU28882 lncRNA upstream 3962 25176513 ~ 25176748 (-) True G25040
TU28884 lncRNA upstream 5804 25178355 ~ 25178673 (-) True G25042
TU28955 lncRNA upstream 100991 25273542 ~ 25273769 (-) True G25110
TU28959 lncRNA upstream 105914 25278465 ~ 25278687 (-) True G25114
TU28963 lncRNA upstream 109574 25282125 ~ 25282666 (-) True G25118
XM_021596436.2 mRNA downstream 42494 25089297 ~ 25112231 (-) False LOC110519226
XM_036974277.1 mRNA downstream 42496 25089297 ~ 25112229 (-) False LOC110519226
XM_036974279.1 mRNA downstream 42496 25089297 ~ 25112229 (-) False LOC110519226
XM_021596479.2 mRNA downstream 45851 25089296 ~ 25108874 (-) False LOC110519226
XM_036974229.1 mRNA downstream 71487 25044445 ~ 25083238 (-) True LOC110519016
XM_021596861.2 mRNA upstream 200279 25372830 ~ 25381856 (-) False LOC110519951
LOC118959932 mRNA upstream 287191 25459742 ~ 25463093 (-) True LOC118959932
XM_036974449.1 mRNA upstream 300985 25473536 ~ 25485212 (-) True LOC110520001
XM_021596965.2 mRNA upstream 364564 25537115 ~ 25566593 (-) True LOC110520008
XM_021596976.2 mRNA upstream 507358 25679909 ~ 25712438 (-) True LOC110520015
TU28762 other downstream 203338 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 216024 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 289891 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 601163 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 928235 24222907 ~ 24226490 (-) True G24542
TU28960 other upstream 108041 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 109053 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2463537 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 2884892 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 2884892 28057443 ~ 28066305 (-) True G28870

Expression Profile