RNA id: NM_001185029.1



Basic Information


Item Value
RNA id NM_001185029.1
length 1114
RNA type mRNA
GC content 0.39
exon number 3
gene id il17c1
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25411732 ~ 25413325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAAAACAGAGCATAAGCACTTGGGCTCCTCTACtaacaaatatatatttgatattAGAAAATGCCAGGTCTATTCAAGATTATGCAGACTCTACTTTTACTTGGACTTTTTATTGATAAATTGACTTTGGCATCAGAGGCACACAAGCATAAGGGATGCTTCAGTGCAGAAGAACTGGAGGATGGAGCTCTTAAGATCTTGCGTCGAAACCGGTACCTGAAAGACGGTCATATTGATGAAACGCAGTATCACAAGCTGGGTACGAAGAAGACCTGCCCTGCTGTGCTTCATTCACAGTCAGTAGACTACAACAACCGTTCTGTCTCCCCCTGGCGGTACAGCATCGATAGCAAGGAGGGACGATTCCCTGAGAAGATTGTTGTTGCTGAATGTCTATGCACGGGATGTATCATCGTCAAAGGGCACGGACATCACGGGGCCGAATACGAAGATTATGGATATAACTCTGTGCCTGTAGTGCAATCCCAGATGGTTTTGATGAAGACCGAGTGCACGACCGACCCAGGAAAATATTCATTCAGCTCACATTATATTAAAGTGCCTATTGCCTGCACCTGCGTTAAGGCTAGGACATATTAAGTGCCTCTCATAGAGGACATTTTTTAGACAAACTGTAGTGACatgtttcacattttgttgtgtttgttttaaaATGCACTTAAGTTATTGAAAGTATAACACTATGCTTATGGATACGAAGCTATCGAGAATACATGGATTTTTACATGACACTCTTAGGTACATTAATGTAGTACTTGTGTTGCAAGGTTGTATTTATTTGATGATCTATTAACTATTTATTAGTCTCGGCAGACGGGTTTCCTCCCACAATGTACCAATGTTCCGGCTGTTGCTCATAGGTCTGGGTTTCAGAGACTAACTATTTATTGAACTATGTTCTCAAGCTATTTATTTATCGATGTTTTTTGGTGACTTTTGTTATTAGGACTATTCCTTTCAACATCAATGTGTTCTTCTGTTCCTGTTTTCCCATCAACATAATCAAACATTTTAGATAGCTGCCTCTGTTGAAATGTAGCAGAATTTATGAAATTTTATTGTTGTTTCCTTAATAAAGATTACCAATGAAAT

Function


GO: NA

KEGG:

id description
K05491 IL17C, CX2; interleukin 17C

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29042 lncRNA upstream 51298 25360153 ~ 25360434 (+) True G25194
TU29030 lncRNA upstream 65066 25346151 ~ 25346666 (+) True G25182
TU29028 lncRNA upstream 66773 25344455 ~ 25344959 (+) True G25180
TU29017 lncRNA upstream 77265 25334244 ~ 25334467 (+) True G25169
TU28998 lncRNA upstream 97768 25313600 ~ 25313964 (+) True G25150
TU29130 lncRNA downstream 1147 25414472 ~ 25414784 (+) True G25264
TU29140 lncRNA downstream 7955 25421280 ~ 25421536 (+) True G25274
TU29143 lncRNA downstream 11769 25425094 ~ 25425325 (+) True G25277
TU29150 lncRNA downstream 16790 25430115 ~ 25430355 (+) True G25284
TU29156 lncRNA downstream 20838 25434163 ~ 25434569 (+) True G25290
XM_021596891.2 mRNA upstream 1779 25382521 ~ 25409953 (+) False zc3h18
XM_021596875.2 mRNA upstream 1779 25382529 ~ 25409953 (+) False zc3h18
XM_021596900.2 mRNA upstream 1779 25382812 ~ 25409953 (+) False zc3h18
XM_021596882.2 mRNA upstream 1779 25382818 ~ 25409953 (+) False zc3h18
XM_036974379.1 mRNA upstream 1779 25382861 ~ 25409953 (+) False zc3h18
XM_021596928.2 mRNA downstream 35531 25448856 ~ 25458271 (+) False LOC110519986
XM_036974437.1 mRNA downstream 38098 25451423 ~ 25458271 (+) False LOC110519986
XM_021596940.2 mRNA downstream 49775 25463100 ~ 25473427 (+) True LOC110519996
XR_005040979.1 mRNA downstream 78210 25491535 ~ 25502970 (+) True LOC118945804
XM_021596988.2 mRNA downstream 299098 25712423 ~ 25732202 (+) False LOC110520022
TU28083 other upstream 243404 25167817 ~ 25168328 (+) True G24365
TU28168 other upstream 299871 25111210 ~ 25111861 (+) True G24435
TU28024 other upstream 554481 24856944 ~ 24857251 (+) True G24307
TU28011 other upstream 571270 24839985 ~ 24840462 (+) True G24295
TU27821 other upstream 859297 24550525 ~ 24552435 (+) True G24123
TU29188 other downstream 42322 25455647 ~ 25456117 (+) True LOC110519986
TU29432 other downstream 299246 25712571 ~ 25732199 (+) True LOC110520022
TU30794 other downstream 1241972 26655297 ~ 26655598 (+) True G26858
TU30765 other downstream 1266966 26680291 ~ 26686798 (+) True si:ch211-216l23.2
TU31559 other downstream 1900497 27313822 ~ 27316517 (+) False G27553

Expression Profile