RNA id: LOC118966628



Basic Information


Item Value
RNA id LOC118966628
length 763
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC118966628
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25732955 ~ 25747219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGAAAGAGGCCAACCAGAAAATAGTGGAGGAGTATGTCTTCCGTGTGCATGACCACCACCGGGAGCGCATCGGCAACTTTAAGATTGAGCCCCCGGGTCTGTTCCGAGGGCGGGGGGTGCACCATAAACAAGGCATGTTGAAGAAGAGAATCCAGGATGTCATCACCTATGCAAACCAGCAGAACCTTCAAGTTCATACAGAGGTGGACCCGCCAGAGACAGTCCTCTGCCATACACAGCTGAGAGCAGGTAACGAGAAGAAGAAGGACGAGACGGCTGACACGGTGTTCATGGAGAATAAGGAGCCTGGAGATGACCTGTTTGATCGCCTCAACAACCTGGCAGAGAAGCTGCTCTCCTACAACAGAGATAACCGAGCGGTTGCAGTTCTGTGTAACCACCAGCGGGCGCCGCCAAAGACCTTTGGTCAGTCTAAGGCCAACCTCCAGTCCAAGATTGTCGGCAGGAGTGAGCAGTCGGCACTGGCCAAGAGTAAGCTGAAGCTGTCCAAGGGGGTCAAAGCTCACAGCTCAGACGGCAAGCTGCAGGCATGAGTGCGTAAGAAGGCTGTGCAGCGTCGTGAATAGAAGCTTATGAAGATGGAGGTTCAGGCCCCAGACAGGAGAACAAGCAGATTCCCCTGGGCACCTCCAAACTCAACTTACCTGGACCCATGAATCAGCATTGCCTGGTGTAAGAACATGGAGGTGCTTCTGGACAAAATATAACAAATCTCAGAGGGAAGTTTGGCTGCGCTATTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU30119 lncRNA downstream 758 25712572 ~ 25732197 (-) True G26216
TU30120 lncRNA downstream 18197 25712544 ~ 25714758 (-) False G26216
TU30137 lncRNA downstream 65398 25666939 ~ 25667557 (-) True G26230
TU30122 lncRNA downstream 79560 25651058 ~ 25653395 (-) True G26217
TU30062 lncRNA downstream 148091 25584421 ~ 25584864 (-) True G26164
TU30246 lncRNA upstream 119025 25866244 ~ 25932705 (-) True G26328
TU30461 lncRNA upstream 450933 26198152 ~ 26245155 (-) True G26538
TU30498 lncRNA upstream 501628 26248847 ~ 26340716 (-) True G26573
TU30582 lncRNA upstream 626424 26373643 ~ 26374041 (-) True G26654
TU30688 lncRNA upstream 759453 26506672 ~ 26506938 (-) True G26760
XM_021596976.2 mRNA downstream 20517 25679909 ~ 25712438 (-) True LOC110520015
XM_021596965.2 mRNA downstream 166362 25537115 ~ 25566593 (-) True LOC110520008
XM_036974449.1 mRNA downstream 247743 25473536 ~ 25485212 (-) True LOC110520001
LOC118959932 mRNA downstream 269862 25459742 ~ 25463093 (-) True LOC118959932
XM_021596861.2 mRNA downstream 351099 25372830 ~ 25381856 (-) False LOC110519951
XM_036974547.1 mRNA upstream 147997 25895216 ~ 26501491 (-) False LOC110520038
XM_036974542.1 mRNA upstream 156739 25903958 ~ 26501491 (-) False LOC110520038
XM_036974544.1 mRNA upstream 156740 25903959 ~ 26302529 (-) False LOC110520038
XM_036974537.1 mRNA upstream 156740 25903959 ~ 26501491 (-) True LOC110520038
XM_036974585.1 mRNA upstream 1179079 26926298 ~ 26938743 (-) False LOC110520062
TU28962 other downstream 450937 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 451925 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 781568 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 794254 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 868121 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 1888869 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 2310224 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 2310224 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 2956668 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 3533057 29280276 ~ 29280700 (-) True G29906

Expression Profile