RNA id: XM_036974537.1


Basic Information

Item Value
RNA id XM_036974537.1
length 3813
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110520038
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25895216 ~ 26501491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGGGAAGTTGGCAGCTCGCGGCAAGCTCTTTTACTCTCGCACTGGCAGTTCGACTCTGGAATTATGAGCAGAGCTGGTCAATCCTGTACCTTGTTTTGAATTTTATTCCCAGAGAATTGAGACCATGGAGATGAGCATCGGCATCCTCATTGCGTTCCTCCTCTCACAGGTTGTCCATATTGGAAcccaggaggagggggagaagggatgcGTGCCTGGCTTTCAGGTGAAGGAGTACCAGGTGGAGTTCAACAGAGGTTTCCAGAAGGACCATCCTCTCACACAAAtGTTATTTGATGACTGTGTGGGGAACGAGGGCATGGCGTTTGAGGTGTCCCACCCAGACTTCCAAGTGGATGAGGAGATGAACCTGGTGGCCAGACGGGATGTGATGGACAGCGGCACCGTCATGTTCATCCATGGTGTCAATGAGCATGCTGAGGACATGGCACAGGTGGACATTGTAGGAGCTCTACCGCGGTCTCCCCAAACACTCAGGGAGATCCTTGGCCTTGGACAGATCCAGCCCTACAGATCAAAGAGAGCCCTGTTCGCCCCCCGCATGCATGTCAGTGAGAACATGGAGCCCCCATTCCCGAAAGTCATTGGCACGCTTATTGTGATGTCGTCAGGCATGGAGGATGACCACATCTTCCATATGACTGGGTCGGGTGCAGATCAGGACCCAAAGGGGGTGTTCACCATCAACAGGTTGACTGGAGAGGTGTCTGTTAGCCAAGAGCTGGACAGAGAGGCCATCAATTCCTACATGCTGGAGGTGTCTGTGACAGACCAGAATGGGAAGCTGGTGGAGGGTCCTGTAGCCCTGCTCGTGGACGTCAATGACCAGAATGACAACAGGCCCATCTTCAAGGAGACCCGTTACGCTGGAGAGGTGCTGGAGGGCTCACCTACAGGAACCGTGGTGATGACGATGACAGCGGAGGATGCTGATGACCCCAGGTTGCAGAACGCGGTGCTGCGCTACAACATTGTGAGGCAGTCGCCCGACAAACCCTCACCCAACATGTTCTACATCAACCCAGAGAGCGGCAACATTGTCACTGTCATCTCCCCCACACTTCTGGACAGAGAGACACTCCCCACTACGCAGTATGAGCTGGAGATCGTAGCCCAGGACATGAAGGGAAGAGACGTGGGACTAACAGGAACATCCACGGCAACCATCACCATCACAGACAAGAACGACCACGCCCCAGAGTTTACCCACTCACTGtTCCAGGCCAATGTGGATGAGGGCTCCACAGGGGTGGTGGTCAACCTGACTGTGGACGACAGAGATGACCCTGCGACGGGGGCGTGGCGAGCCATCTACTCCATCATCAAAGGTGACCCCACCCAGAGCTTTGAGATCCAAACCAACCCTGACAACAATGAGGGCATGCTTTCCCTCATTAAGcctctAGACTATGAGAGCTTAGTGTTCCACACGCTGCTGATCAAGGTGGAGAACGAGGACCCCCTGGTGCCAGATGTGGGCTACGGCTCCAGTTCTACAGCCACCGTACACATCACCATCCTGGACGTCAACGAAGGACCAGTCTTCTTCCCCGACCCCCTTCAGGTCACCAAGATGGAGAACGTACCCCTGGGAAGCTTCGTGGCCTTACTCAACGCCACCGACCCAGACGTCCTCCAATCACAGAGCATCAGGTTTGCAGTTCTGAGAGACCCGGCTAACTGGCTTAGTGTGAACCCGGTTAGAGGTACGGTCAACACCTCTGCCAATCTGGACAGAGAATCACCTTACGTTCAAGACAACAAATACACTGCCATCTTCATGGCCACAGACAACGGTAGCCCACCAGCCACTGGCACTGGCACTCTGGTCATCCACCTGGAGGACTACAATGACAATGCTCCCTACGTTCACCCATCTGTGGTACGGGTGTGTGAAGACGCCAGGGACAGTGTGGTGATAGTGGGGGGACGGGACAAGGACATCCACCCCAACACTGGGCCCTTTAAGATCGAGCTGGGGAAGCAGCCTGGGCTGGAGAACACATGGAAGGTCTCCAGGGTCAATAACACACATGCTCAGATCATGCTGCTACAGAATATGAAGAGGGCCAACTACCAGCTTCCTCTGGTGGTGACAGACTCGGGCCTGCCTCCGCTCTCCAACAGCACCGAGATCAAGGTCCAGGTGTGCACCTGTAAGAAAAACAGAATGGACTGCAGTGGTGCTGGCTCTGTACGCTCCAACCTGATCTTGCTGCTGGGACTAGTCCTGCTCTCCCTACTCTGTGAGTATACAGTAACTCTAGTCCTGCTCTACCTTCTCTGTGAGTATATAGTAACTCTAGGCCTGCTCTCCCTACTCTGTGAGTATATAGTAACTCTAGGCCTGCTTTCCCTACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTACCTTCTCTGTGAGTATATAGTAACTCTAGTCCTGCTTTCCCTACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTCCCTACTCTGTGAATATATAGTAACTCTAGTCCTGCTCTCCCTACTCTGTGAGTATATAGTAACTCTTGGCCTGCTTTCCCTACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTCCCTACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTACCTTCTCTGTGAGTATATAGTAACTCTAGTCCTGCTGTCCCGACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTCCCTACTCTGTGAATATATAGTAACTCTAGTCCTGCTCTCCCTACTCTGTGAGTATATAGTAACTATAGTCCTGCTCTCCCTACTCTGTGAGTATACAGTAACTCTAGTCCTGCTGTCCCTACTCTGTGAGTATACAGTAACTCTTGTCCTTCTCTACCTACTCTGTGAGTATACAGTAACTATAGTCCTGCTGTCCCTACTCTGTGAGTATATAGTAACTCTAGCCCTGCTCTACCTTCTCTGTGAGTATATAGTAACTCTAGGCCTGCTTTCCCTACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTACCTTCTCTGTGAGTATATAGTAACTCTAGTCCTGCTTTCCCTACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTCCCTACTCTGTGAATATATAGTAACTCTAGTCCTGCTCTCCCTACTCTGTGAGTATATAGTAAATATTGGCCTGCTTTCCCTACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTCCCTACTCTGTGAGTATATAGTAACTCTAGTCCTGCTCTACCTTCTCTGTGAGTATATAGTAACTCTAGTCCTGCTGTCCCTACTCTGTGAGTATATAGTAAGTCTAGTCCTGCTCTCCCTACTCTGTGAGTATATAGTAACTATAGTCCTGCTCTCCCTACTCTGTGAGTATACAGTAACTCTAGTCCTGCTGTCCCTACTCTGTGAGTATACAGTAACTCTTGTCCTTCTCTACCTACTCTGTGAGTATACAGTAACTATAGTCCTGCTGTCCCTACTCTGTGAGTATACAGTAACTCTAGTCCTGCTGTCCCTACTCTGTGAGTATACAGTAACTCTAGTCCTGTTGTCCCTACTCTGTGAGTATACAGTAACTCTAGTCCTTCTCTACCTATTGCTCAGTCAACAATCTGTGTGAAAAGAGTTAGACTCTGGAACTTGCTTCCAGATGACATTAAGAATTGGCAAACTCTCAGTGAGTTTAAACATAAAGTAAAATTCATGTATAGACCTCCTAAAACAGTTTCTGGAAACAAATAATGACAGGTTCTGGACTAGAGGGCAAAGACTATTCTCC

Function

GO: NA

KEGG:

id description
K06808 CDH13; cadherin 13, H-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30119 lncRNA downstream 171762 25712572 ~ 25732197 (-) True G26216
TU30120 lncRNA downstream 189201 25712544 ~ 25714758 (-) False G26216
TU30137 lncRNA downstream 236402 25666939 ~ 25667557 (-) True G26230
TU30122 lncRNA downstream 250564 25651058 ~ 25653395 (-) True G26217
TU30062 lncRNA downstream 319095 25584421 ~ 25584864 (-) True G26164
TU30688 lncRNA upstream 5181 26506672 ~ 26506938 (-) True G26760
TU30692 lncRNA upstream 9714 26511205 ~ 26511409 (-) True G26764
TU30951 lncRNA upstream 42767 26544258 ~ 26555526 (-) True G27008
TU30985 lncRNA upstream 98585 26600076 ~ 26602818 (-) True G27039
TU31015 lncRNA upstream 140444 26641935 ~ 26642143 (-) True G27068
LOC118966628 mRNA downstream 156740 25732955 ~ 25747219 (-) True LOC118966628
XM_021596976.2 mRNA downstream 191521 25679909 ~ 25712438 (-) True LOC110520015
XM_021596965.2 mRNA downstream 337366 25537115 ~ 25566593 (-) True LOC110520008
XM_036974449.1 mRNA downstream 418747 25473536 ~ 25485212 (-) True LOC110520001
LOC118959932 mRNA downstream 440866 25459742 ~ 25463093 (-) True LOC118959932
XM_036974585.1 mRNA upstream 424807 26926298 ~ 26938743 (-) False LOC110520062
XM_036974576.1 mRNA upstream 433969 26935460 ~ 26938743 (-) False LOC110520062
XM_021597071.2 mRNA upstream 433969 26935460 ~ 26939324 (-) True LOC110520062
XR_005053625.1 mRNA upstream 641869 27143360 ~ 27143413 (-) True LOC118966748
XM_021597149.2 mRNA upstream 704420 27205911 ~ 27215251 (-) False LOC110520098
TU28962 other downstream 621941 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 622929 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 952572 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 965258 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 1039125 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 1134597 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 1555952 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 1555952 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 2202396 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 2778785 29280276 ~ 29280700 (-) True G29906

Expression Profile