RNA id: XM_021597149.2


Basic Information

Item Value
RNA id XM_021597149.2
length 3449
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110520098
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27205911 ~ 27215251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagcaagacagtgATGTGTGAATGTCATGCAATGATGTGATTGTGAATACATCGCATACATGCCTGGACCAGTGACTTTTGAGCACATGGGAAAGTTGTAAGCCTATATGGACACTAACGTGGAGTCCTGTCCTCGCCTACAATTATTAAACGCAAAGAATGTTTCAGAGGGCAGTCTGGTCAGGGATGAGAGAGCATTATTTCGGGGAGATTGGAAAGTGAAAGTAAAAACCCGTGACATCTGGGCCTGTAGAAGCATGTTTTTTTAACAGGCTCTGCCCTCATTCGGAGCTGCTGCTGGAGACGGAACAGATTCGCAATTAATTTTTACTCATTTTGAAGAGCTGGGGGCCAAAGAGGGCAAGAAAGAGAGGCTTCGGTTATTTTCCTAAATTCGCTTTGGTCGGAGACTGGGTTTTGTTCTGGGTGTTGCCACACTCAGATAATCTGTTGAAGACGACACATCGTGCCAATGTCACTGTCCGGATTAACGCACGCGTTGTTTCCCAGACTTGTAAATCATTTGTGTGGGGCATGTGTGCTTTTGATCGGTGCTGCTGCGGGTTATTCTGAAGATACTGGATTGTTGAAGTGACGGGTTTCGGTTGTTACAGTTACAGGCTAACACAGAGCGAAAAGGGCCTGGTGGTGCTCTGGAACAGTGTGGGCTCTGAGTCGGAGGCCTCCAGCGTGTTTAGACAGGGACCTCAGTTGGACTATGTGCCGGCCAACAACCTGGCTCCTGGGTGGGCTATTCGGTTTGATGTGGGTAATACCGGTTTTGATGACACCCACAACATTGGCCCAGTGCAAGTCGTTGAAGACATTGGAAACAAAACTCACCGACAGAAGACGTAACTTTAAGCACAATTTCCCCATTAATTACACCATCAGAGTTCACTATGAAGAGATCTTCAAACTCTGCAACATCAGCAGGCTGAGGGTGAGGGTGGTGGATCTGGAGGAGGGGGACCTGCAGGATGTGTGGCTGTTGGTCAACCAGGAGGTGTTGAAGAGAATCTTGAGGGTCCTGCCAGAGAGACATCCCTCCTACAAGTACACCTCTGATCTGGAAGATCTCTTCAGGAAGATCCAGCAGGTGTTCCCACCACAGAGTGATGAGAGAGAGCCCCCAGAGCGAATAGAGGAGATCTACAATAGAGTGAAGGAGCCCAACTCAAAAGGGTGGAGGTTCGTGACCCCCAAATCCCTGTTGGATAACTGCTATAGGACAATGCACTGTCTCTTCAAAAACTGCTTTCCCAGTGAAGATGGAGTGCAAGACTATTGTAGCACTCTTCACTGGCGGAAGGGCAGAAAGAGACAACTACAGGAAACCTGAGGAGGACGTTAATTTCCAAACATtgcaaatatacactgagtgtaaaaaacattaagtacaccttCTTAATATTTAGTTGCACCCCATCCATTTTTgcttgttgactccaatgcttcccacatttgtgtcaagttggctggatgtcctttgggtggtgaaccattcttgatacacacaagaaactgttgagcgtgaaaaacccagcagcgttgtaattcttgactcaaaccggtgcacctggcacctatcaccataccctgttcaaaggcacttaaatattttgtcttgtccattcacactctgaatggcacacatacacaatcaatgtctcaattgtctcaaggcttaatcattctttaacctgtctcccccccttcatTTACACTAATTGAAGTGGGTTTAGCTAACACGTGACAtcgataagggatcatatctttcacctggattcacctgttcagtctatgtcatggaaagagcaggtgttcttaatgttttgtacactcagtgtatgtccaATGTTGCAGTTGAGCTGTATGTCATACCCCTCCTGTGTGAAGTTCTGATGTTGTTGCACCAACAATATGCCCTGAAAACTATTACCAACGGTATACAACCCAAACTTCATCTGTTGCTATGGATGCCACAGTAAATACATTCCCTGTGGACTTTGCAGCTTTATCCACACACTGTTATTGTCACAGCTTGCCTACAGTTTTGTTTACTTATCATTCTTTGCCTCCTATGTTGTATAGTACTTTGAAAGAGATATTTTATAGTTTTCATATGTGTACTTATAATATATTGTCTGCTGATGTTTATGTTCTGTGTTTTGACAGTTGTATGGTATAGCGCAGGTGGCTATGCTCAAGCAGAGAGCTACAGAGTATGGCATTTCTATACCTTTTTTTGCAATCTGGGAACACTTGTTGGTGACAGGTATTAGCAACTGTTGCCAATATATTCAAAAATAATAACAGAACACAATTATAGCTACTTTCAGGACTGTTGTCGTTTTCTTTTGCTCAGTTTTAAAAAAAAGCATGGCACTTGCTATGTCAGGatggtgggtttgattcccaggaccacccatacttaaaatgtatgcacacatgactgtaagtcaATGTAAGTCAATGGCatatagtgaacaaaaatataaacgcaacattcaaCATGGAATAACTGggtcattttcagcttccaggaattgtgtacagatccttgcgacatggggcagtgcattatcatgctgaaacatgagatgatggcggCGGGTGAatagcacgacaatgggcctcagggtcTCGTCACgggatctctgtgcattcaaattgccatagataaaatgcaattctgttcattgtccatattttatgcctgcccataccctaatcccactgccaccatggggcactctgttcacaactttgacatcagctaaccgctcgcccacacaaccccatacacgtggtctgcggttgtgaggccagttggacatactgccaaattctctaaaattacgttggaggtggcttatggtagagaaattaacattaaattctctggccacAGCTCTGGtgcacattcctgcagtcagtatgtcAATTGCACACTCACCTTTTTTTGTCCCcaccacaaggtgcacctgtgtaatgaccatgctgtttaatcggcttcttgatatgccacacctgtcaggtggatggactttcagggaaaaggagaaatgctcactaacagggatgtaaacacatttgtgcacaaaatctgagagaaataagctttttgtgcgtatggaaaatgtatgggatcttttaattcagctcgtgaaacatgggaccaacactttacacttTGACATTTTAAGCAATTATGATATTTCTTTGTTCTATgtttttaaaattgatttaagATATTTTGCTGACTTGCAGGCTTTGTCAGTGAATTCCAACAATGTCCAGCCACTCATGGTTTTGTTACTGTTTATTGATGCTGAAATAAAGCTATTTGTGCAATCTATTCACAGGTTCAACATGTTGAGAGTTGGGACATGCTGCATTTCTTGTATGGTTACATTAAAATAAAGAGTTTTTATATACACAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31461 lncRNA downstream 68581 27137100 ~ 27137330 (-) True G27481
TU31456 lncRNA downstream 70890 27132927 ~ 27135021 (-) True G27476
TU31458 lncRNA downstream 73982 27131682 ~ 27131929 (-) True G27478
TU31441 lncRNA downstream 84992 27120706 ~ 27120919 (-) True G27462
TU31392 lncRNA downstream 125849 27079861 ~ 27080062 (-) True G27414
TU32052 lncRNA upstream 8236 27223487 ~ 27232530 (-) True G27969
TU32025 lncRNA upstream 11016 27226267 ~ 27229084 (-) False LOC110532124
TU32039 lncRNA upstream 28711 27243962 ~ 27263301 (-) True LOC110532124
TU32113 lncRNA upstream 136054 27351305 ~ 27351655 (-) True G28024
TU32122 lncRNA upstream 188603 27403854 ~ 27404723 (-) True G28033
XR_005053625.1 mRNA downstream 62498 27143360 ~ 27143413 (-) True LOC118966748
XM_021597071.2 mRNA downstream 266587 26935460 ~ 26939324 (-) True LOC110520062
XM_036974585.1 mRNA downstream 267168 26926298 ~ 26938743 (-) False LOC110520062
XM_036974576.1 mRNA downstream 267168 26935460 ~ 26938743 (-) False LOC110520062
XM_036974537.1 mRNA downstream 704420 25903959 ~ 26501491 (-) True LOC110520038
LOC110532124 mRNA upstream 10912 27226163 ~ 27299859 (-) False LOC110532124
LOC110532131 mRNA upstream 101421 27316672 ~ 27321126 (-) True LOC110532131
XM_036974703.1 mRNA upstream 117297 27332548 ~ 27342006 (-) True LOC110520123
XM_021597236.2 mRNA upstream 158011 27373262 ~ 27375372 (-) False LOC110520135
XM_021597226.2 mRNA upstream 158011 27373262 ~ 27375453 (-) True LOC110520135
TU28962 other downstream 1923893 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 1924881 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2254524 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2267210 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2341077 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 420837 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 842192 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 842192 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1488636 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 2065025 29280276 ~ 29280700 (-) True G29906

Expression Profile