RNA id: LOC110532131


Basic Information

Item Value
RNA id LOC110532131
length 2679
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110532131
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27316672 ~ 27321126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAGCCAGGGACTACACAGGAACGGTTGGTGCTGAAGACGTAAATGGCATTGACATGGCCTACTGTGTCCTGGCTGACCACGCCCACACCATCACCATCGCCCTCTCTGATGAGGGCAGGCCAGACAACACAGGGAGAGGGTGCCCTTTTAACTGTCTGGCTGTCTTTGATCTATGCTCGTCTGAACATCAGTCTGTTAATGTGGACATGTTAACCCTCTCGCACTGTTTGTGTGCAGTTGTGTTGCTCTCACGAGAAGCTGGGTGCTCAGAGAGGCTTCTTTGCCACCTTAGTTGATGTGGTGGTAGAGTCCCTAGTATGAAATCTCATCCCACTCCTACTCTTCATGTTATTaactatctttatctctctctccctcttagtcATCCTCCCTTACCTGTCTTCCTCTGCTGTCCCCTCTCTCCAAGGTGATGACTTCCCTGAGCTGAAGAAGGACCATGACATGGTGAAGGATATCGTcaatgaggaggaggagcagtTCCTCAAGACACTCAGCAGGGGGCGAAAGATCCTGGACAGAAAGATCCAGAGTCTTGGAGAGAGCAAGGCCATCCCTGGTGACACAGCCTGGTTGCTGTACAACACATAAGGTTTCCCCAGTGGATCTCACTGCCCTCTTTgctgaggagagggggatgaaggtGGACGTTACAGAGGGGGATGTTGGAGAAATGGTGACCAGTAGAAAAGATAGAGGGAAGGGCTCTGGGGAAGAGGACCACATCATGCTGGACATCTATGCCACCGAGGACGTATGCAATCAGGGCATCGCTGCTACTGACGACTCACCCAAGTACAGCTACAGTGCTGACGACTCACCCAAGTACAGCTACAGTcaggctgtggggacagtgcTGGCTCTGAGAAGGGAGCGTGCCGTCGTGGATGAGGTAACGACAGGGCAGGAGTGTGGGGTTCTGCTGGACCATACCTCCTTCTATGCTGAGCAGGGAGGACAGAGCTTTAACGGGGGCTACATGCTGAGGAAGGACGACTCTGGAGATGACAGGATGGAGTTCACAGTGAAGAACACTCAGGTTCATGGTGGATATGTGCTGCTTGTAGGAACGGTTTGTGGCACTCTGGAGGTGGGCGACTGTGTCATCCTGCACGTGTACGAGGTAATACATCACTCAGAGGTACATTTTAGGACTCAGCCCGTCATGAGTAACCACACTGCCACCCACATCCTGAACTTTACCCTGCGGGGGGTCCTGGGAGAGGCTGACCAGCGTGGCTCCCTGGTGGCTCCTGACCGCCTGCACTTTGACTTCACCGCCAAGGGTGCTCTGTGCACAGGAGCGTCTCTGGGCATAGCGGTGATCTCCCAGTGGGAGAAAGATGATATGAGGGAGGCTTTGAAGGGACTGAAGAAGACCATGGATGACCTGGACTGTTCCAACAAGGCTGATGTCCAGAAGAGGATGAGAGAGCGCGGGGGGGTTCTTGAAaagaccaaggagatgattgACAGCAGTCCTAACCAGCTGCTGGTAGTCATGGAGATGGAAAATGGAGTCTCTGCCAAGgctCTGAATGAGTCTCTGAAGCTGCTGAAGACTCAGTCCCCCCAGACTGCTGCTATGCTCTTCACAGTAGACAACGAAGCTGAAAATATCATCTGTTTATGCCAGGTTCCCCAGGATGTTGCCAACCGAGGTCTGAAGGCCAATGAGGGTGTGCAGGAGCTTAGCCCTCTGATGGATGGCAAGGGTGGTGGCAAGGATATATCTGCCCAGGGCACTGGCAGGAACACACACTGTATAGCAAAAACACCACAAATGGCCAACCAGTTTGCCTGTCTCAAACTGGGTGAAAACTAATATGGAGGAGACTGGGGTGTGGTGAAGGATTGTAGGGAAAACCCTTACCACCCCCACTGGAATGTTCCAGCTCTGTTCTCTGTGACTCTGGACATTCCAGGTAGGAAATTGTAAAGGAACATTCACCCATCTAATGGTTAGAAAGGGAAGAAGATGCACGagccctctgtctctttctctgaaaGGGAGATGCACCTGCTATTTAAGGAGGGTATCAAGGTTTGAGCCGATGCACAATTCTGATGGATCCTTCAATGGTCTGTGTGCTCAAAGGAGGCTAATCACTTTGATTGGGAAACTGAATGATGATCGGTGTATGCGAGATGCTAACCCAACAGCCTCCTACCTGATCTGTCCTCTAGTAGTCAAAGCCCAACAACTATCCTCTTAAACCATCCCTTTTAAACTAATGATGGAAATACTCAATGGTAAACTGCTTCTGTTCATTGCCTGTTCCTCTCTATTCCAGTGGTCTCTCCATGTCATTGTGTTTGTGTCTCACTTCCCTGCCCTGACTGTGGGGAGATTGTAATGTAGATTGACACCTACTACAGTAGCCATGAAAGGCAGAAGCAACCTTAGCATCTGTCAGTGCCGCTAGCTTTGACAGTCTTGTTGTCTCTTTCATATGTAGCGTCCAATAAATAATTGGCAATTAATTAAATGGATGACATGACATTGTCAAATCTGTGAAATGCATTTTATTGCCACTTCCTAGGAATGCATTGGGATTAGTCCATGTCTGATGCATTCCATGTTGTGGAATGAAAACACTGGTAACGCTTGATTTCTGTTGCATTCTTTCCACGAATACTAGTAGTTAgatctctctt

Function

GO:

id name namespace
GO:0006419 alanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004813 alanine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32039 lncRNA downstream 53371 27243962 ~ 27263301 (-) True LOC110532124
TU32052 lncRNA downstream 84142 27223487 ~ 27232530 (-) True G27969
TU32025 lncRNA downstream 87588 27226267 ~ 27229084 (-) False LOC110532124
TU31461 lncRNA downstream 179342 27137100 ~ 27137330 (-) True G27481
TU31456 lncRNA downstream 181651 27132927 ~ 27135021 (-) True G27476
TU32113 lncRNA upstream 30179 27351305 ~ 27351655 (-) True G28024
TU32122 lncRNA upstream 82728 27403854 ~ 27404723 (-) True G28033
TU32169 lncRNA upstream 164385 27485511 ~ 27486768 (-) True LOC110520201
TU32168 lncRNA upstream 184277 27505403 ~ 27506148 (-) True G28074
TU32200 lncRNA upstream 225400 27546526 ~ 27546794 (-) True G28106
LOC110532124 mRNA downstream 16813 27226163 ~ 27299859 (-) False LOC110532124
XM_021597149.2 mRNA downstream 101421 27205911 ~ 27215251 (-) False LOC110520098
XM_021597157.2 mRNA downstream 101421 27205911 ~ 27215251 (-) True LOC110520098
XR_005053625.1 mRNA downstream 173259 27143360 ~ 27143413 (-) True LOC118966748
XM_021597071.2 mRNA downstream 377348 26935460 ~ 26939324 (-) True LOC110520062
XM_036974703.1 mRNA upstream 11422 27332548 ~ 27342006 (-) True LOC110520123
XM_021597236.2 mRNA upstream 52136 27373262 ~ 27375372 (-) False LOC110520135
XM_021597226.2 mRNA upstream 52136 27373262 ~ 27375453 (-) True LOC110520135
XM_021597248.2 mRNA upstream 54714 27375840 ~ 27392581 (-) False LOC110520144
XM_036974750.1 mRNA upstream 54714 27375840 ~ 27392581 (-) True LOC110520144
TU28962 other downstream 2034654 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2035642 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2365285 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2377971 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2451838 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 314962 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 736317 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 736317 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1382761 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1959150 29280276 ~ 29280700 (-) True G29906

Expression Profile