RNA id: XM_021597226.2


Basic Information

Item Value
RNA id XM_021597226.2
length 1277
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110520135
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27373262 ~ 27375453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccGGAACTAATCAGCTGGGATCTGTTTCTTTACCGGACTGAATTTACTGAAGGgaggttttttttttgttgccttggTAGCGATTACAAAAAATCAATTAGCTAGACAGCTACGTAGTTTGCTAACTAAATAGATTAAGAATGGACGTTAAAGAGCGAAATCCGCTGGGTGGTGGCGAGAACATCGTTGAAATGGTGGATTTGGATGAGGAGAATTTTGCTGTTTcaaaCTCATCAGATTCAGATGCAGCCTTTGATGCTGTCATTGGGAGTATTGAAGACATCATCATGGAGGACGACTTCCAGCACATGCAACAGAGCTTCATGGAGAAACACTACCTGGAGTTTGATGACTCCGAGGAGAACAAACTCACCTATACACCCATCTTCAACGAATATATTGAGCTGCTTGAGAAACAACTTGAGCAGCAGCTGATGGAGAGAATTCCCGGTTTCAACATGAGCACATTTACTCAGCTACTCAAGCAGCACAAAGACGAAGTGTCAGGAGACATCTTCGACATGTTGCTTACTTTTACAGACTTTATGACCTTCAAAGAAATGTTCATTGATTACAGAGCACACCCATACCTCCTCTGTCTGCAGGAGAAGGAGGGCCGAGGGCTTGACCTCAGTGATGGCCTAGTGGTGAGGTCTCTCAGCTCTACATCCTCCAAATCCATCAcctccagaacaacaacaaaactgAAGTAACTAATGAAGAGTCATCCCCAAACACATGACCAATAGTGCACTGTGCTGCTGACAACAGAACATAATTGTTTGTCTTGCCCATGCCCTCCAGTCACAGGGGACCACAGGGAACATCTGTCTTTCCCACAGCTTTTGTATTTGAACTGTTGTAGGTTTGCAATGGGAATGGTATCAGTCAGGTTGGTCTTTGTTTTACAAATAGCCTTTCTCTGGTTAAGATAGACACCTTTGTCCTCAGGGTGGGGTACATTGTTTTTTATAAAATTTGTGCTCAATGACTTGAGTTTTGTGCCCGTTACATTATTAACACGAATGCCAGAAGGTGTTTGTAGGTCAAGCATTTTAGACAGACTAAACAGTAGCCTAGTTGCTCAGCCCTTGGCATTGGTGGTTAGGAGAACTATATGCACCAGCAATGGGAAAAcacttcaatgtttttttttttttattgtactcATAGCCCTCCACAACAAACAGTATATGAAGCCTGAAAGACGAAACCTGGTACATTCAGTCCTAGGCTGTTTGGTCGATGGTGCTTTCTCAGATCCTTCTTTCTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32113 lncRNA downstream 21607 27351305 ~ 27351655 (-) True G28024
TU32039 lncRNA downstream 109961 27243962 ~ 27263301 (-) True LOC110532124
TU32052 lncRNA downstream 140732 27223487 ~ 27232530 (-) True G27969
TU32025 lncRNA downstream 144178 27226267 ~ 27229084 (-) False LOC110532124
TU31461 lncRNA downstream 235932 27137100 ~ 27137330 (-) True G27481
TU32122 lncRNA upstream 28401 27403854 ~ 27404723 (-) True G28033
TU32169 lncRNA upstream 110058 27485511 ~ 27486768 (-) True LOC110520201
TU32168 lncRNA upstream 129950 27505403 ~ 27506148 (-) True G28074
TU32200 lncRNA upstream 171073 27546526 ~ 27546794 (-) True G28106
TU32162 lncRNA upstream 175877 27551330 ~ 27552058 (-) True mt2
XM_036974703.1 mRNA downstream 31256 27332548 ~ 27342006 (-) True LOC110520123
LOC110532131 mRNA downstream 52136 27316672 ~ 27321126 (-) True LOC110532131
LOC110532124 mRNA downstream 73403 27226163 ~ 27299859 (-) False LOC110532124
XM_021597149.2 mRNA downstream 158011 27205911 ~ 27215251 (-) False LOC110520098
XM_021597248.2 mRNA upstream 387 27375840 ~ 27392581 (-) False LOC110520144
XM_036974750.1 mRNA upstream 387 27375840 ~ 27392581 (-) True LOC110520144
XM_036974738.1 mRNA upstream 29606 27405059 ~ 27443073 (-) False LOC110520152
XM_021597260.2 mRNA upstream 29606 27405059 ~ 27445369 (-) False LOC110520152
XR_005050752.1 mRNA upstream 50299 27425752 ~ 27443076 (-) True LOC110520152
TU28962 other downstream 2091244 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2092232 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2421875 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2434561 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2508428 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 260635 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 681990 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 681990 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1328434 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1904823 29280276 ~ 29280700 (-) True G29906

Expression Profile