RNA id: XM_021597248.2


Basic Information

Item Value
RNA id XM_021597248.2
length 3399
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110520144
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27375840 ~ 27392581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtagctGACGCTACGGAACTAGGCTAGTTAGTTATCAGTACAGCCGTACACAAAATTAAATAAATGGGTTTGAGGGCGTTATACCCGATTGAATCAATAAAGAGCAGATTAAATGGGATTGTTAACCATCTAACGTTACACTAACTAGTTTGTGCTTGCAAGCTCCCCTTTTTGTttagttagctacctagctagcttggCTAACGGGTAGACAGCTAGTTTAAAGTAAAAGCGTTTCTCGTAAagcttttcaggggcctattcaTCTTCATGATTGTCGTAACTCGTTAACTATCAGAGGACATTACCAGCTATTTTGCAAGTTGCCATCCATCTGCAGAGTAGTAGCACCATGATTGACGTCCCCACCCGGATCGTCATGAGACGCCTCCACGAGTGCTCCAAATGATATGATAGTAGCTTCTTGGATTGCATTCTGTGCTAGCAGGAGCCTTGAACAGGTTCTACTGCTCTCTTTGGAGCAGCAACATTCACTACGGGTTTGGAAAAGCCTCGGGACAACCAGAACCATGGGAAACAGCTGTGTTTGTAGAGAAGACAGTGATGTGGATGATGGATCGGCAACTCGCGGGCAGCTCAGGCGAGTTGATCACACCGCTGCTGATCACCCGGAGGCACGAAGCAGTCGGCCCCGGGACCCAGTCAGACCGCCGCGCCGTGGACGGGGACCCCATGAACCTCGCCGGAAGAAACAAAATGTGGACGGGCTGGTGCTGGACACACTTGCTGTCATCAGGACTCTAGTTGACAATGACCAAGAGCCTCCCTACTCCATGATCACGCTGCATGAGATGGCAGAAACGGATGACGGCTGGTTGGAGGTGGTCCAGTCTCTGATTCGGGTGATACCACTGGACGACCCATTGGGACCAGCTGTGATCACCCTGCTGCTTGACgagtgcccactgcccacaaaaGACGCTCTACAGAAGCTGTCCGGGATGCTGAGCCTGAGTTCCACTGTGGCCCGCCAGGATGCTGTCATCCCTTCCAAGCACcgcaacactacagctgtactaGGCTGCCTGGCTGAGAAACTGGCTGGTCCAGCGAGCATTGGACTCCTGAGCCCTGGAACCCTGGAGTACCTGCTGGAGAGCCTGAGTTCTGAGGCACATCCTACTGTTATGCTCTTTGCCCTCATAGCCTTGGAGAAGTTCTCACAGACCAGTGAGAACAAGCTAACGGTGTCCGAGTCATGTATAGGTGACCGGCTGGGGATTCTGGAATCGTGGGCTGACCACACAGACTACCTGAAGCGCCAAGTCGGCTTCTGTTCACAATGGAGCCTGGATAACCTCTtcctgAAAGATGGTCGTCAGTTCACCTATGAGAAGGTGAACCTGAGCAACATCAATGCCATGCTGAACAGCAATGACGTCAGCGAGTATCTTAAGATCTCTCCTAGTGGACTCGAGGCGCGCTGCGACGCGTCCTCCTTCGAGAGTGTCCGCTGTACCTTCTGTGTGGACTCAGGTGTGTGGTACTATGAGGTCACTGTGGTCACCTCAGGGGTCATGCAGATTGGCTGGGCCACCAAGGATAGCAAGTTCCTCAACCATgagggCTATGGGATAGGAGATGATGAATATTCATGTGCATATGATGGCTGCAGGCAGCTAATCTGGTACAATGCTCGCAGTAAGCCACACTCCCACCCTTGCTGGAAAGAGGGAGATGTCATCGGTTTCCTACTGGACCTCGGTAAGAAGCAGATGCTTTTCTTCCTGAATGGACATGAACTCCCCCCAGAGAAGCAGGTGTTCTCCTCCGCAACGTCTGGCTTCTTTGCAGCAGCAAGTTTCATGTCCTACCAACAATGTGAGTTTAACTTTGGGGCGAAGCCCTTCCGCCACCCCCCATCTGTTAAATTCAGCACCTTCAATGACTTTGCCTCGCTGGCGTCTGATGAGAAGATTATCCTTCCCAGACACCGGCGCCTGGCTCTGCTGAAGCAGGTGAGCATCAGAGACAACTGCTGCACCCTCTGTTGTGACCAGATGGCCGATACGGAGCTGAGACCCTGTGGACACAGTGGGATGTGTATGGAGTGTGCCTTACAGTTGGAGACATGCCCACTGTGTCGCCAGGACATTCAGACACGTGTCAGACTCATCTCACACGTGTCCTGACACTTCGCCTCCAAACCAGGACATGAACactcctccccaaccctcccctcctccaATCCCAACCAATAGGACAATGGGGCTGTGCTAGGATTTGTGATCGGACACTGGGCCTAATTTGAGGAGGGAGTGGTGGGACCTGACGAAGACCCCCAGGAGAGCGACTGTAGGGAGAATAGAACAAGGAGGGGGAACCTTTCTTTTATCTGCACTCCATGGAGCGTTCTCTCTGTGAGGAGATGGGCCCCTCACCAGTCTGAGAGCAAGAAAGtgctgagagagtgagagggcagGAAGGCAATTTTGAGATATTAGCAGGCAGCAGCATTTCCAGAATTGCCTCATCAATCTTAATGTCATAAACTCACACAGTATCTGCACATGGATCTGCCTAATGTTACCTCAGGCTCTGGTCAATGTGTCCTGTGTATCTCTGCTCAAACGTTTTAAATGTATCTGTGATTCTCTTGTTTTCTGACTAAACGTAAaggcacaacaacaaaaagactATGTTAACTCCCTGCTCAAACATACAATACCAACTGAGCACAGATTTGTCTAttactctccatctctcgctctctcctttacTTGAAGCATTTCTGAGTTGATTGAATAATCATTCTGTTATAAATGAGATTGCAAAATTAACAGAGGAACTCTGATTCAAAAAGTATCATATTTGTGTACGTACAATTAAAACTAAATTGAGTTGATTGAAATTAAGTTATTGAAATCACAGTTAACTGGGATAGTTTTGATTCCCAGGATAGCCTGAAGTGGTTGTGGAAAATCATTCAGAATCAGAGGATGTTGTCAGAAGATATCACACATCTCTGTTAGTATGAATGACTACATTTGGTCACAGTGCAAATTTGGAGGGCCAATTGTCTCCATTCCAGAAAATTAGTCATTGAAGAAAAAGTGAAATTGTATCTTAACGTCTTAATGGAGTAGCCCCAGGGGTCCCAAAGATGTGATTTACTGATTGATCATTGTTTTCTGAATTGTGATATTTGTAATAATAAATATtcaagtaactgtccagtgtttccagatttctatgaaatatgacctataattaaaAACAATGAGTGAAATAGTTTGCCTTCCAAAAAATGTTAAGTAATGATCTTAAAAAGCAGCTTTTTTTTGTGTTGGAATGTTGTGGAAgtgccccaacaacagaatggtgtgggtgtaaaCCGGTCATTAAAACTATTCATGGGAGCTCATCCCACAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32113 lncRNA downstream 24185 27351305 ~ 27351655 (-) True G28024
TU32039 lncRNA downstream 112539 27243962 ~ 27263301 (-) True LOC110532124
TU32052 lncRNA downstream 143310 27223487 ~ 27232530 (-) True G27969
TU32025 lncRNA downstream 146756 27226267 ~ 27229084 (-) False LOC110532124
TU31461 lncRNA downstream 238510 27137100 ~ 27137330 (-) True G27481
TU32122 lncRNA upstream 11273 27403854 ~ 27404723 (-) True G28033
TU32169 lncRNA upstream 92930 27485511 ~ 27486768 (-) True LOC110520201
TU32168 lncRNA upstream 112822 27505403 ~ 27506148 (-) True G28074
TU32200 lncRNA upstream 153945 27546526 ~ 27546794 (-) True G28106
TU32162 lncRNA upstream 158749 27551330 ~ 27552058 (-) True mt2
XM_021597226.2 mRNA downstream 387 27373262 ~ 27375453 (-) True LOC110520135
XM_021597236.2 mRNA downstream 468 27373262 ~ 27375372 (-) False LOC110520135
XM_036974703.1 mRNA downstream 33834 27332548 ~ 27342006 (-) True LOC110520123
LOC110532131 mRNA downstream 54714 27316672 ~ 27321126 (-) True LOC110532131
LOC110532124 mRNA downstream 75981 27226163 ~ 27299859 (-) False LOC110532124
XM_036974738.1 mRNA upstream 12478 27405059 ~ 27443073 (-) False LOC110520152
XM_021597260.2 mRNA upstream 12478 27405059 ~ 27445369 (-) False LOC110520152
XR_005050752.1 mRNA upstream 33171 27425752 ~ 27443076 (-) True LOC110520152
LOC110520192 mRNA upstream 54463 27447044 ~ 27467451 (-) True LOC110520192
XR_002472956.2 mRNA upstream 92904 27485485 ~ 27486881 (-) False LOC110520201
TU28962 other downstream 2093822 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2094810 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2424453 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2437139 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2511006 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 243507 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 664862 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 664862 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1311306 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1887695 29280276 ~ 29280700 (-) True G29906

Expression Profile