RNA id: XR_005050752.1


Basic Information

Item Value
RNA id XR_005050752.1
length 2682
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC110520152
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27405059 ~ 27445369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCCTTAGGTGTGAAGAGTGTTTTAGTCACTCCAGTGACTGTAATGTTGGATGGACTGAACCTGAGGGGCTGTTTAGGGATATGGGGCTGTGGGAGGGCTGACAATCCTGCCGGCATGGCCTACACGCTAGGCACGGGGCCCGACTCTGGGCCAACCGTGAGTCCCCAGCACTGCATCACCAGGGTGGAGCTGTCTGTGTGCTGCGGCAACCTGCTGGACAGAGATGTGACCTCCAAGTCAGACCCCTTCTGTGTGCTATTCAATGAGGTGGACAGCAGCTGGGTTGAGATTGGCCGAACAGAGACTGCAGTGAATAACCTGAATCCAGTGTTTGGGGTGAAGTTTAAGGTGGACTACCATTTTGAGGAGGTCCAGAAGCTCAAGTTTGCCCTGTTTGATGAGGACAAGTGCAGCAGCCAGCTGTATGAGCATGACTTCCTGGGAGAGTACATCTGTACACTGGGGGTGATTGTGTCCAATAAGAAACTTCACCGACCACTAACCTTGGCCAATAGCAAGCCAGCTGGGAAGGGAACCATCACAATAACTGCGCTGGAACTGTCAGACAATAGAATAATCACATTGACATTGTGTGGGAGAAAACTTGACAAGAAGGATTTCTTTGGTAAATCAGACCCCTACCTAGAGTTCCATAAGCAAGGAGATGATGGGAAATGGATGTTAGTCCACAGGACAGAGGTGATAAAGAACACTCTGGACCCGGTGTGGAAGCCCTTCACAGTACCACTCATCTCCCTCTGTAACGGGGACGTGGACAGGAGCATCAAGGTACTGTGCTATGATTACGACAACGATGGAGGCCATGACTTCATTGGAGAGTTTCAGACCACTGTCAACAAGATGAGTGAAGCCCAAAATTCACTGGAGATCGAATTTGAATGCATTAATCccaagaaacagaagaagaaaaagagcTACAGAAACTCTGGAATCATCATTCTGAAGTCATGCAAGGTTGAAAGGGACTATACCTTCCTGGACTATATTTTAGGTGGATGCCAAATCATGTTCACTGTTGGCATTGATTTCACAGCGTCTAATGGGAACCCTCGGGAGGCCTCCTCTCTTCACTTCATCAACCCTCTGGGCAGCAATGAGTACTTGTCCGCCATCCTGGCTGTGGGCCAGATCATCCAGGACTATGACACTGACAAAATGTTTCCTGCTCTGGGATTTGGGGCTCAACTCCCTCCAGACTGGAAAGTGTCTCATGAATTTGCCATCAACTTTGACCCCACCAATCCCTTCTGCCAAGGCGTGGAGGGGATTGCCCAGGCctactctgtctgcctgcctcacATCCGTTTCTACGGCCCCACCAACTTCTCCCCCATCATCACCCATGTGGCCCGCTTTGCCACCCAGGCCCTTCAACAGGAGACTGCTGCGGGCCAGATGTGGTAGCACATGCTGATCATGTGATGATGGTTTGCCAACAGTAACCCAGAGCTCCTGAAGTCACAGAACCTTTAAACATTCACAAGGTTGAAGAGGTATATAGGGTACTAGGGGGTAACTGCCCCCAGCCCCTATAATTCACATTAAGACCACAAGATGTCaccaaatatttttttcaacactttCCTTGGCTGCCACTGCTCTTGCTCAACAACCAAAAATCTTCTGTGTCATCACAACTTTTGGAGATATTTCAACAAAACGATTTTGTGTCACAGGTGGGGACATGGATTAGGTGTGAGCGGTGCAGGAGATGGACTCATGAGTTGGGCTCCAATTTGACTGGGGATAGCTTGTTTTGTGACCTATGTACAAATTAGAATTGTGCAATGGCAGAGTATAAGAGAGTTGCCTCCAATGTTACGCTGAACTAATTAGTTAAGTTATTATTATGAATTATTCAATTCCAATGTTATTTAATGTCATTAGTTATATTCCATTCCAATATTATATTCTAATTCATATTTTTTGAATGAATTAAAAACAACTAGTGAAACCCTTTTGCTCCTGAATGTCATTTTAAAGACGGCTGGGATTGAACAGGTTACCCAGGTACTTTTTTCAAAAAGCCCCTTTTCTAAAACAACATTTCATGAAATTACAAAAAAAGTGTAAACTGTAGCCATTTATTTCCCTTTATAGTTTATTTGCCTAAGTATGACCTTCATCCACATACCAATTTCTTTCCCAAATGTTGCTTTTTTTGTGTCAGCAATTAGACATTGCTGGTTACTCCCAAGTACCCTACCACTGAGCCATTACATGACGTCTTCTTGTTCCAGGTAGAGGTTTTTATAGAAAGATTCCGTATCCATGGAAACTTACCCTCACCCTTGCTGAAGCAACTCAAAAAACATATTTAACAATATTGGAAATAGCTGGAGTGATGTCTACATCATCAACTCTATACGCAACCTATTCAAACACTTTGTACTCATGCCTGGTTTTACAACAATAGTTCTCTGTATTCTGCCTCTCATGCATAATGAGACATAACAGGCTCTGGCTTATTGGTAAAGTCATAACAGTTACAGAGTAAAGAGTCCATCTCATTGGACAGCCTTCCCTGTACGAATAATTGTTTTCTGTGTCCATCAGACAGGCTTGTTTCCCTCAGAGCTGCTCAGCATGCTGTAATTAGAAAATAATGAGTCCCCTTACTGCTGTTCACACGGGCCTATCAGCAagctgtgtgttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32122 lncRNA downstream 21029 27403854 ~ 27404723 (-) True G28033
TU32113 lncRNA downstream 74097 27351305 ~ 27351655 (-) True G28024
TU32039 lncRNA downstream 162451 27243962 ~ 27263301 (-) True LOC110532124
TU32052 lncRNA downstream 193222 27223487 ~ 27232530 (-) True G27969
TU32169 lncRNA upstream 42435 27485511 ~ 27486768 (-) True LOC110520201
TU32168 lncRNA upstream 62327 27505403 ~ 27506148 (-) True G28074
TU32200 lncRNA upstream 103450 27546526 ~ 27546794 (-) True G28106
TU32162 lncRNA upstream 108254 27551330 ~ 27552058 (-) True mt2
TU32211 lncRNA upstream 118869 27561945 ~ 27562365 (-) True G28112
XM_021597248.2 mRNA downstream 33171 27375840 ~ 27392581 (-) False LOC110520144
XM_036974750.1 mRNA downstream 33171 27375840 ~ 27392581 (-) True LOC110520144
XM_021597226.2 mRNA downstream 50299 27373262 ~ 27375453 (-) True LOC110520135
XM_021597236.2 mRNA downstream 50380 27373262 ~ 27375372 (-) False LOC110520135
XM_036974703.1 mRNA downstream 83746 27332548 ~ 27342006 (-) True LOC110520123
LOC110520192 mRNA upstream 3968 27447044 ~ 27467451 (-) True LOC110520192
XR_002472956.2 mRNA upstream 42409 27485485 ~ 27486881 (-) False LOC110520201
XM_021597364.2 mRNA upstream 47468 27490544 ~ 27498055 (-) True LOC110520206
XM_021597398.2 mRNA upstream 64525 27507601 ~ 27522504 (-) False LOC110520211
XM_036974842.1 mRNA upstream 64525 27507601 ~ 27543901 (-) False LOC110520211
TU28962 other downstream 2143734 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2144722 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2474365 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2487051 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2560918 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 193012 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 614367 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 614367 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1260811 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1837200 29280276 ~ 29280700 (-) True G29906

Expression Profile