RNA id: XM_036974842.1



Basic Information


Item Value
RNA id XM_036974842.1
length 2646
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110520211
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27507601 ~ 27544963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


actttcTCGCCTCTAAACTTGGTTGCCATGGAAGCGGAGGGCTTTGGAGAGCTCCTGCAGCAGGCGGAGCAGCTTGCAGCGGAAACTGAGGCTGTGTCTGAGCTTCCCCATGTTGAGAGGAACCTTCAGGAGATCCAGCAGGCTGGAGAGAGGCTACGTTCCCGCACCTTAACCCGAACGTCGCAAGACGCTGCTGACGTAAAAGCCTCTATCCTCCTGGGTTCCAGAGGCCTGGACATATTCCACATCTCCCAGCGTCTGGAGAGCTTGAGTGCTGCCACTACCTTTGAACCTTTGGAGCCAGTGAAAGACACTGACATCCAGGGCTTTCTGAAGAATGAGAGGGACAATGCGCTGCTCTCTGCAATCGAGGAGTCACGTCGCAGGACGTTCCTCCTGGCAGAGGAGTACCACCGTGAGTCCATGCTGGTTCAGTGGGAGCAGGTGAAGCAGAGAGTACTGCACACCTTGCTGGGAGCAGGGGAAGATGCTCTGGACTTCAGCCAAGACGTAGAGCCCAGCTTTGTGAGTGACGCAGGGACTCCTGGGCGGAGTGCTCTTGACAGCGTGGAGGTAGCCTATGGACGACAGATCTACGTCTTCAATGAGAAGATAGTGAACGGACACGTCCAGCCCAACCTGGGAGACCTCTGTGCTTCAGTGGTAGACAGCCTGGATGACAAGAACGTGTCAGATATGTGGCTGATGGTGAAGCGGATGACAGACGTGCTGCTGGTCCCAGCCAAAGACACGCTGAAGAGCCGCACGTCTGTGGACATGCAGATGGCTTTCGTCACGCAGGCCCTGCAGTTCCTGGAGAACAGCTACAAGAACTACACCATGGTAACAGTGTTTGGGAACCTGCTCCAGGCCCAGCTGGGCGGAGTCCCTGGCACCTATCAGCTGGTGTGCAGCTTCCTCAACATCAAGCTACCAGGGCCTCTGCCAGGCATGCAGGATGGTGAGGTGGAGGGTCACCCAGTCTGGGCTCTGATCTACTACTGCCTGCGCTGTGGGGACCTGGGGGCTGCCATGCAGGTGGTGAACCGGGCTCAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAATATATGAACAGCCCTGACAGACGCTTGGCCCCTGCCACAGAGAACAAGCTGCGTCTCCACTACCGCAGAGTGCTGAGGAACAGCGCTGACCCCTACAAGAGGGCCGTCTACTGCCTCATTGGGAAGTGTGACATCGCAGACAACCATGGAGAGGTGGCCGACAAAACCGAGGACTACCTGTGGCTCAAGCTCAACCAGGTGTGCTTCGATGACGACGGCAGCAGTGCTCCTCAGGACAAACTGACACTGGCCCAGCTACAGAAACAACTTCTAGAGGACTACGGAGAGTCCCACTTCTCAGCCATCCAGCAGCCGTTCCTGTACTTCCAGGTGCTGTTCCTCACGGCCCAGTTTGAGGCTGCTGTGGCCTTCCTGTTCCGGGTGGAGCGTCTACGCAGTCATGCTGTTCACGTGGCTCTGGTTCTCTACGAGCTAGGGCTGCTGCTCAAGTCATCTGGACAGAGTGCACAACTGTTGAGTCAGGAGGCTGGGGACCCCCCTATGGTCCGACGGCTCAACTTCATCCGTCTCCTCATGCTCTACACACGCAAGTTTGAGTCCACAGACCCCCGGGAAGCGCTACAGTACTTCTACTTCCTACGGAATGAAAAAAACAGCCAAGGAGAAAACATGTTTATGTGCTGTGTTAGCGAGCTGGTGATTGAGAGTCGAGAGTTTGACATGCTTCTGGGAAGACTGGAAAAAGATGGCAGCAGGAAGCCTGGAGTGATTGATAAATTTGCCGGAGACACGCGAGCCATTATCACAAAAGTGGCGCTGGAGGCAGAGAACAAGGGCCTGTTTGAGGAAGCAGTCAAACTGTATGAGCTGACCAAGAATCCAGACAGGGTCCTGGAGCTGATGAACAGGCTGCTGAGTCCTGTTATTGCCCAAGTGGGCTCCACCCAGTCCAATAAGGAGAGACTGAAGAACACTGCTGTTGCCATCGCTGAGCGGTACCGGACCCAGGGTGTTGCTGGAGAGAAGTCTGTGGACAGCACCTTCTACCTGCTGCTGGACCTCATGACCTTCTTTGATGAGTACCATGTTGGTCACATAGACCAAGCCTACGATgTTATGGAGAGACTGAAGCTGGTCCCTCTGAGTCAGGACAGTGTGGAGGAGAGGGTCGCTGCATTCCGTAATTTCAGTGATGAGGTCAGGCATAATTTGTCGGAGGTTCTCCTGGCCACCATGAACATCCTGTTCATGCAGTACAAACGTCTGAAGGGCGCCACAGCAGGAGCCCCTGGTCGACCACAGAGATCCATGGAGGACAGAGACTCGCAACTGCGCAGCCAGGCTCGAGCACTGATCACGTTTGCTGGGATTATCCCATACCGAATGGCAGGCGACACCAATGCCCGGCTGGTGCAGATGGAGGTCCTAATGAACTGACTCCAGAATACCCCAAAGCCCCAGCCATTACCCACCCTTCTCATCAACTGTCTGATTTATTTGATTTCTTTCAGCATTTTTCCCATTTCTTTGTCCTTATGTTGTTccatatttgtattttttcataAATCTAAATAAAATGTCAGTTCAATTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32168 lncRNA downstream 1453 27505403 ~ 27506148 (-) True G28074
TU32169 lncRNA downstream 20833 27485511 ~ 27486768 (-) True LOC110520201
TU32122 lncRNA downstream 102878 27403854 ~ 27404723 (-) True G28033
TU32113 lncRNA downstream 155946 27351305 ~ 27351655 (-) True G28024
TU32039 lncRNA downstream 244300 27243962 ~ 27263301 (-) True LOC110532124
TU32200 lncRNA upstream 2625 27546526 ~ 27546794 (-) True G28106
TU32162 lncRNA upstream 7429 27551330 ~ 27552058 (-) True mt2
TU32211 lncRNA upstream 18044 27561945 ~ 27562365 (-) True G28112
TU32212 lncRNA upstream 18606 27562507 ~ 27562707 (-) True G28113
TU32167 lncRNA upstream 31903 27575804 ~ 27578100 (-) True LOC110520275
XM_021597364.2 mRNA downstream 9546 27490544 ~ 27498055 (-) True LOC110520206
XR_002472956.2 mRNA downstream 20720 27485485 ~ 27486881 (-) False LOC110520201
LOC110520192 mRNA downstream 40150 27447044 ~ 27467451 (-) True LOC110520192
XM_021597260.2 mRNA downstream 62232 27405059 ~ 27445369 (-) False LOC110520152
XM_021597409.2 mRNA upstream 7434 27551335 ~ 27552061 (-) False mt2
XM_021597454.2 mRNA upstream 22455 27566356 ~ 27575091 (-) False LOC110520267
XM_036974887.1 mRNA upstream 22455 27566356 ~ 27575091 (-) False LOC110520267
XM_036974885.1 mRNA upstream 22455 27566356 ~ 27575092 (-) True LOC110520267
XM_021597481.2 mRNA upstream 31846 27575747 ~ 27610094 (-) False LOC110520275
TU28962 other downstream 2225583 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2226571 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2556214 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2568900 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2642767 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 92187 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 513542 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 513542 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1159986 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1736375 29280276 ~ 29280700 (-) True G29906

Expression Profile