RNA id: XM_021597442.2



Basic Information


Item Value
RNA id XM_021597442.2
length 2528
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110520258
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27560102 ~ 27565152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGTTAAAACGGTGTCGTGCCAGTTTtgcacatttctccaaaagttaACTCCTTATTACAGAGCCTCCAAACCAAGTACGTCTGTATTCATTTAATGTGTTTTCTCTCAATGTTAAACCTCGTTTATGTTGGACCCAGGTTGGACCCCAGCTTTCCTACAGTCTGAGACTGCAGATTTCATACAGAAACCAGATGTTCCCGGGTTTGGCAGTGGCGCTATATAATTGCTTTGGTGACTTTAATCTGTCGTGGAGCAGAGCCTGCTGATGAGATGGGATGGAATGAGTGTCATGGACTAAAGGGAAAACCCTTCACATACATACTGCAGGAGAAACATCAAGACTGCAGAGTGTTGGGTTACGGAGAATAAATCGTCAGGACCTCAGGGTCATAACTGTTCCCTGTCATTATGTTCACTCAATGAATGGAAACAATCCGGAAAACCTTTGCATGGATGATCAGTATTATGAAATCCTCCCAGGATGCTATGTGGCGCTTTCTGATCTCAGATCCTGAGGGAGAGGAAAATAAAGATCAATGGGAAAAGAGTGGTAAATAAAATCAGAGGGAAATAGGTTCAGTCAGACACAATGAGGAGAATTCATATAAAATATGTTCTGTGCACCCTGCTCATGCTGGGGCTACTCTGTCTGATGTTGTATGCCCATCAAGGCTTCACTTCCACCTGGGACACCTGGCAGTTAGAGCAGGGCTGTACAAGCTCCCGCGCTCTTTTAGGGCCCCCACCAGAGAGCCGTGTAACTAAACAGGTCCCTTCTACGCCCCCAGACAAGACAAAGTGCCAGTCTCCGCATCAATCCCATTCTAAGTCTCAGACATACCCCAAGTCCAAACTTCAGTCTAAATCCAAACCTCAGGCAAAGAACAAATCTAAGTCAAAGAAAGATGAGGGGACAAAGGCTGTTCCAGTTTTACCCACACGACCACCTTTTGACTTTGAGGGTTACCTGAGGGATAAGGACAACCGGGACTTCATACTGCTGATGGACCAGCTAGGGAAGTGCTCAGGCGAGCCCTACATGCTCATTGCTATCAAGTCAGTAGTGGCAGACTTTGAAAGGAGGCAGGTAGTGCGGCGCACCTGGGGAAGGGAGGGTGTTCTCCAGGATGGGCAGACAGTAAAGACTGTATTCCTCCTAGGGGTGCCCATGAACAAGACCGCCCTCCCTTTCTGGGACCGGCTCCTTGCCTACGAGAGCCACACCTTTGGGGACATTCTCCTCTGGGACTTTGATGACACATTTTTCAACTTGACACTTAAAGAGACCCACTTCCTCCAGTGGGTGAATGGCAGCTGCTCCAATGTCCAGTTCATCTTCAAAGGTGACGCAGATGTCTATGTGAATATTGAGAACATTCTGGAGATGGTGAAGGGTCAGAAGCCTGATAAGGACCTCTTTGTGGGTGATATAATCCACCATGCCCGCCCCATCCGCCGGCGCAGCAGCAAGTACTTTGTGCCTGAGTTTGTGTACGGCCAGACGATGTATCCGTCATATGCAGGAGGGGGAGGCTTTGTGATGTCCGGTCACACCGCCAGGCGTCTGAGTGGAGCGTGTCAGCAGGTAGAACTATTCCCTATCGACGATGTGTTCTTAGGCATGTGCTTACAGAGAATTGGAGTGAAACCGTCACACCATGAGGGTTTTCGTACGTTTGGCATTGTGCGCCCCTCTGCTGCTCCCCACCTCCAGGTGTTTGACCCTTGTTTCTACAGGGAGCTGATGGTGGTACACAGCCTGACAGTACCACAGATCTGGCTCATGTGGAACCTGCTGCATGACCCCCAACTGAGCTGTCACAGTAACCCGACCCCCACCCTGTGGCCCTTCAAGTGGAGGGGCAAGGTACTCAGGACAACAGGACAAAAGGACTCAGAGACTACAGTGGAACAGGACTATGATGTTACAGTGTTTGTAAAGCATTGAGGGGTTTGGTTTAAGTTGATCAGAGGGACTACACTGTGAAAGCCATTGGGATATGGAAGCTGTGATTGAATGTTTGCTAGTTATTTTGAGGTTTTTTCTTAAAAGTTTACAGCCATTGTAAATGTACCCCTTTTCTAAGAAAAAAATAATGTTATCTTTTTCATTAACATCCTGGATGTAAAACCAGTCTGTATACTGGTGGTAATGTTTAAAATATCCCTGCTCCATTTAGGTACAGTATGACTGAAtccatttttgtattttattgcacAGAGCCTCAATAAGGTCAATATTGACTGAAGCATGTGCCAGGTTGATTTTGTGAAATTGAATGTACATTACAGTGTTGTCAATTATGAATCGCTGTGTGTGATAACACATCATATTACACCTTTATGTAGACTTGACCTTTATGTAGACTTGAAAGGGAAGTTAGGGGAGGCAAAGCTCAATGCATCAACtgtataggacacatcactgcactctatactcctctgtaaactggtaatctctgtacacctgtcgcaagacccactggttgatgctgatttataaaaccctcttggGCTTCACTCCccc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU31774 lncRNA upstream 7940 27551335 ~ 27552162 (+) True G27722
TU31769 lncRNA upstream 8061 27551335 ~ 27552041 (+) False G27722
TU31849 lncRNA downstream 111379 27675685 ~ 27759169 (+) True G27791
TU31944 lncRNA downstream 228299 27792605 ~ 27838346 (+) True G27880
TU32397 lncRNA downstream 286278 27850584 ~ 27852871 (+) True G28284
TU32399 lncRNA downstream 290905 27855211 ~ 27855455 (+) True G28286
TU32400 lncRNA downstream 294015 27858321 ~ 27858761 (+) True G28287
XM_021597430.2 mRNA upstream 315 27553383 ~ 27559787 (+) False LOC110520245
XM_021597421.2 mRNA upstream 315 27553386 ~ 27559787 (+) True LOC110520245
XM_036974815.1 mRNA upstream 155357 27393237 ~ 27404745 (+) False LOC110520156
XM_036974932.1 mRNA downstream 252173 27816479 ~ 27830578 (+) False LOC110532139
XM_036974943.1 mRNA downstream 252326 27816632 ~ 27830578 (+) True LOC110532139
XM_021597536.2 mRNA downstream 270492 27834798 ~ 27840257 (+) True LOC110520308
XM_021597619.2 mRNA downstream 469401 28033707 ~ 28037291 (+) False LOC110520354
XM_021597725.2 mRNA downstream 678264 28242570 ~ 28288088 (+) True pard6a
TU31559 other upstream 243585 27313822 ~ 27316517 (+) False G27553
TU30765 other upstream 873304 26680291 ~ 26686798 (+) True si:ch211-216l23.2
TU30794 other upstream 904504 26655297 ~ 26655598 (+) True G26858
TU29432 other upstream 1827903 25712571 ~ 25732199 (+) True LOC110520022
TU29188 other upstream 2103985 25455647 ~ 25456117 (+) True LOC110519986
TU32393 other downstream 280334 27844640 ~ 27845011 (+) True G28280
TU32398 other downstream 289451 27853757 ~ 27854954 (+) True G28285
TU32543 other downstream 483320 28047626 ~ 28048362 (+) True G28416
TU33696 other downstream 1501350 29065656 ~ 29067795 (+) True LOC110520661
TU34064 other downstream 1628423 29192729 ~ 29253218 (+) False mef2aa

Expression Profile


XM_021597442.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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XM_021597442.2 Expression in each Bioproject

Bar chart with 19 bars.
XM_021597442.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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