RNA id: XM_021597454.2


Basic Information

Item Value
RNA id XM_021597454.2
length 4679
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC110520267
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27566356 ~ 27575092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTTTCTTCACGACACACAGGAAGTTGAATAATCAGCTGATAGTGGTGGTGTTTTGTTGGAAGTTGCCGTTGTTTGTGAAGTGTTTATATTCCTTTCTCTTCAATTCACGATAAAGACACAACAAACGAAAAAAGGAATTCGATGGACATTTAATTATTAGTGATGTTATGAAAATTAGCTAAGTGACTCACTGTTACAATTTCAATTCATAGCTAGCTAGATTGCTGTTGAATCCTCGGGAAGAAAGAAAACAGCAACGTAACGTCAGTCAACGGGTTTGAGACgttctttgtttttgttttgtcagacAGAATTGCAGTATTTGGTTTCTTCTTTTTGAACAtcgttttatatttatttataattgTGCGTGGATTTTGATAACAATAACTATACAGGagagctagctagcatagctacAAGTCGCCGATAATTGTTGTCAAGCTCCTGAGTTGTCTAATCAGAAGCGAGACAACAGAGCTGTTTAGATAGTGACGAGTGTGGAAAGATTTcagactagctagctagctagttgtggTAGTTAGCTCAACTGCGACCTGTTGGTAGAGTTATATGTCATCCACCAACCTGTAATTCTCAGTTAGCTTTGTGTGCAATTTAGCAAGTTTGTTGCGCAATTCCTGAATGCCAACGTTGTCAGCAGGGATCGCTGGTCCAAAAGTATGGTAACAGCAATGTGTCGTAACTAAGTGTTGGAGTGTCTTGGCCTCTGAGAAGGTGTCATTTGTCCCACTGTTAATATATTTCAGGGTGTTTTATGTAAACCCGTATTGTGTATGCCTATGAATTAagtattattttattgtgttaatagCTTCATGTTGTGTAGAAACCGTGCAATTGAAAAGGAGTGATTTAAGAAGAGAAGGATCAGGCAGTCTAATATTAAACAACGGTCCAGTTCTGGCACAGGCACAGAACCTCCTTGAAAATCCTTCTCCCTACTTGCCAATGCTGGATCTGGAAGTTGTTCCTGAAAGATCTTTAGGACATGAGCAATGGGAATTCGCATTAGGGATGCCATTGGCCCAGGCCATTTCCATTTTACAGAAACACTGCCGCATCATCAAGAATGTCCAGGTTCTCTACAGTGAACAAATGCCACTCAGTCATGACCTCATACTCAACTTGACTCAGGATGGAATTAAACTGCTGTTTGATGCCTGTAACCAGAGACTGAAGGTGATTGAAGTATACGACTTGAGCAAAGTGAAATTGAAATACTGTGGAGTACATTTCAACACTCAGGCTATAGCACCCACTATAGAGCAGATTGACCAGTCCTTTGGTGCCACACACCCTGGAGTATACAATGCTGCAGAGCAACTGTTCCACTTGAACTTTCGGggactctccttctccttccagcTTGACTCATGGAATGAAGCTCCCAAGTATGAGCCTAACTTTGCCCATGGCTTGGCCTCCCTGCAGATTCCGCACGGGGCCACAGTGAAACGGATGTACATCTATACTGGGAACAACCTACAGGACACCAAGGCTCCAGTGATGCCCCTTGCCTGTTTCCTTGGCAACGTGTATGCAGAGTGTGTGGACGTGCTGAAGAATGGTGCGGGACCACTTGGTCTGAGACTTCGCATCCTCACTGCAGGCTGCGGGCCAGGGGTGATGGCTGATGCTAAGGTGCGTGCTGTGGAGAGGAACATCTACTTTGGAGACTCCTGTCAAGATGTGCTGAGCGCTCTGGGCTCGCCACACAAGGTCTTCTACAAGTCAGAGGACAAGATGAAGATCCACTCTCCGTCGCCTCACAAGCAGGTCCCGTCCAAATGCAATGACTACTTCTTCAACTACTTCACCCTGGGGGTGGACATACTCTTTGATTCCACCACTCACCTGGTGAAGAAGTTTGTCCTTCATACCAACTTCCCTGGTCATTACAATTTcaacatATATCATCGATGCGATTTCAAGATTCCACTTGTCATTAAGAAAGAAGCTGCTGATGCTCAGTGGGAGGACTGCATTCTCACTACCTACAGCAAGTGGGATCAGATTCAGGAGCTGCTTGGACACCCCATGGAGAAGCCTGTCGTGCTCCACAGGTCATCCTCGGCAAATAATACCAATCCCTTCGGCTCTACGTTCTGTTTTGGACTACAGCGAATGATCTTTGAGGTGATGCAGAACAACCACATAGCTTCAGTGACTCTGTACGGTGCCCCCAGACCCAGCAGCCGGGTCCGAGCCGAGGCCAGCGCCCACTGAACAGCATCCTACTGCCAACCCAGGCTTGGCCTGAGggctgtctctcccctcctccagtcCACGCCACAGCACCCCTAGGCTGATCAGAGCAGTGTACTCTGTCTCACTCAATCTCTCACCCACTGCCATGTTCACACCAGAGAGGAGCTCCTCTGGACCCATCTGCCCCACTCTGACAGGCACCTCATCCAGAGGCCTGCTAGGAGCCTTACGTCAGTCTTCATCCCACCCCCCTCCCACCTCTGACTTACCCTGTCCCAATGGTCTTCATCATCAAAACACTCATTAGATGTGTTTCATCAAAACACTCATTAGATGTGTTTCATCAGTGCACATTTGTATGCCggcatgcacaaacacatgctCACCTGCATACACAAATGAGCACCTGCGTGCATGCTACAGTTTTTAAAATGACTTAATACATGCTTGACATGCACACATATATCAGAAACTGATACCAAAATCATTTCAATCCTTTCTCCACTATATGTTCACGTTACCTGTTAATACACATGCATATGGATGCAGGCTCATCTCATATCTGCAGCACTAGCATAACAAGTACACCATTACATACACAGACAGTTACAGAAacaaacatgcatgcacacagacaAATGCATGAATAGAGAAGTTGTTGTTTTTAAAAGGAGAGTGGTAAAAGATGACTAGCACAAACTGGCCTCCCCATGGAGGGTCCTAGTGCTCTGCATGCTTTGAGGGGGAACTGTCTTGGCACATgatcaaacacagacacacatatactggtccacatacaccacacacacacattcatacattaATGTCATGAACAAGTCCTCAGCATAAGCCACCTCCTATTGCAAGGCCGTAAATCACTACCTGCATTTGTAGTTAGTTAGTTTTGTGTTTATTTGCCAGGATCGATGGAAACATTTGAACATTTGCACTAAGATACACCATATTTACTTTCTTGTTGTTTCCTATCCAGTGAGGAGTATTGTGCATTTTATTTCTATTAGTGATGGCAGAGGAAAGGCTCCAGCTCCTCTATCCCATGACTGACTTCCTTTCCTTCCACATGTACACTATCCCCTCCACTGTCCACTGCTACCCCTGTCTTTACAGCCTTCCTCCCCATGCTATCTCatgatttctctctttctccctccatctctctctcttcacaggaGATACCCAAATGAATCCCTCAGATTTACTTCATCATTGCTATCATTTTGTAttttaaaaaaagtgttaaattgcCAAAAGTTTTGCCAAAGATGGTTCAGCATGTTTTAAGTTATCCAGACATTTTAGTTTGTCAAAATTTGACCTTTTCCTAAGAAGAGCAGACATTCCCTCCTAAACAATATTTTGTTAAATTCTAGGCCCCTGACCCATGATCTTAATCTCTCCTAAGTACTTCTTGAGTATATAATCTTTATTATTTGTGCTTTTTAATGCAGATATTTTATCATTCAGTTTTTAGTCTCCTGAGACGCCTCCCTATGTGTAGCAGGTAGATTTGGGACTATGTGCAGCAGCAGTCTCTTCTGGTGTTTTGTACAGATTTGTAAATAGTGTGCTCTTTTTTTGTCATTTTAAGCTAATGGTACAATGTGGGTCTGAATTGTTTTAAGGTCAGAGCACACACCAGACACTTGTATTACTTAGGAATTCTGTTTGATGTCTCTCTCCCCAGTGGAGAGAACAGTGGCGCTCCTAATCCCTGGGCCTGGAGGGTTCATTCATCTCTCTAGTTCAGCTTTAACCACTTAGTACTAGAGACAGATGCTGAAGATGGGCTGAAGCCGAGACAAGGAGGGGTTACTGTTGGATAGGGAAGGGAGCCCTGTACAGTCTATGATGTTTAGAACCCCTGTGTGTGATCAGTGTTACAGTGGGTTGATCGTGTTCTGGTGCTAGATCAGAGGTGTGACTGAGGCTTATAAGTGTGTGTCCTCCTCCCATCTTGTGTATCTATCTGCCATCATGTCAGCCCCTGTCAGACCAGCCCTCCAGGCCTCAGCTTTACAGCGTGTGATGCAGGCTTATTACATGGGCATTGTTCATTCTGTTACATTGACTTGTTTCATGAGTTGcgatgggggaaaaaaaaagCCCTGTACTGTTGTTTTTAATTGTATACCTTGCTTTGTGCAAGTTGAATAAAAGAAAAAGGTAGAATGGCTTGTTAAAGTTGTGCCTCATCTCCCACCAAGTCTGTCTTGACTTCTCTCTGTAAATTAAACTAGCCTATAGAACTGCATTGTGTATGACTTGAGCATGAAAAGTTAACATGGTTGGGTGACTGTCACCCATAGTCATCATTGTCCTCTTGCTCCAGAAAACATAACAGTAAAGAGTAGATTAAAGACTTGGGTcactattcaatctgtatcgccgAAGTGTTACAGCTAGCACgataaatgtaaaggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32212 lncRNA downstream 3649 27562507 ~ 27562707 (-) True G28113
TU32211 lncRNA downstream 3991 27561945 ~ 27562365 (-) True G28112
TU32162 lncRNA downstream 14298 27551330 ~ 27552058 (-) True mt2
TU32200 lncRNA downstream 19562 27546526 ~ 27546794 (-) True G28106
TU32168 lncRNA downstream 60208 27505403 ~ 27506148 (-) True G28074
TU32167 lncRNA upstream 713 27575804 ~ 27578100 (-) True LOC110520275
TU32249 lncRNA upstream 54404 27629495 ~ 27629917 (-) True G28143
TU32391 lncRNA upstream 269142 27844233 ~ 27844580 (-) True G28278
TU32921 lncRNA upstream 269549 27844640 ~ 27845206 (-) True G28749
TU32935 lncRNA upstream 297726 27872817 ~ 27873059 (-) True G28763
XM_021597409.2 mRNA downstream 14295 27551335 ~ 27552061 (-) False mt2
XM_021597382.2 mRNA downstream 21393 27507601 ~ 27544963 (-) True LOC110520211
XM_036974842.1 mRNA downstream 22455 27507601 ~ 27543901 (-) False LOC110520211
XM_021597398.2 mRNA downstream 43852 27507601 ~ 27522504 (-) False LOC110520211
XM_021597364.2 mRNA downstream 68301 27490544 ~ 27498055 (-) True LOC110520206
XM_021597481.2 mRNA upstream 656 27575747 ~ 27610094 (-) False LOC110520275
XM_021597466.2 mRNA upstream 656 27575747 ~ 27610096 (-) False LOC110520275
XM_036974915.1 mRNA upstream 656 27575747 ~ 27610096 (-) False LOC110520275
XM_021597473.2 mRNA upstream 656 27575747 ~ 27610097 (-) False LOC110520275
XM_036974899.1 mRNA upstream 656 27575747 ~ 27610097 (-) False LOC110520275
TU28962 other downstream 2284338 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2285326 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2614969 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2627655 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2701522 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 60997 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 482352 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 482352 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1128796 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1705185 29280276 ~ 29280700 (-) True G29906

Expression Profile