RNA id: XM_021597473.2


Basic Information

Item Value
RNA id XM_021597473.2
length 3932
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC110520275
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27575747 ~ 27610097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTGTGAATGGGGGGAGTATTTTGGGTGTACAGTCAGAAGTCGGACTCCGAGGAGCCAGGAAGTAACTCAGAACCATGCAGCTCGACTGATAAAGTCGAGAGAGCGGGCGTTTGTTGTCAGTGGACAGGGATCATACGCTTCAGGGTGAAAGGGAATTATAGCCAATTGCGAAATTGAGCCTAATCCATTGCAGTGGCAGAGACTGACCGCTCAGTAGTTCCGACTTGAGAGCAGGGAGAGATCACCACCCTGCTTACAATAAGCAAAGCTTCAAGATGCCTCGGGTGGTCCCGGATCAAAGGAGCAAGTTTGAAAACGAAGAGTTCTTCAGGAAACTCAGTCGGGAGTGCGAGATAAAATACACAGGGTTCCGAGACAGACCGCATGAGGAGAGGCAAGCCAGGTTTCACACCGCTTGTAGGGACGGTCGTTCAGAAATAGCTTTTGTGGCGACGGGCACCAACCTCTCGCTGCAGTTCTTCCCAGCCAACTTGCACGGGGAGCAGAGGCAGACGCCCACACGAGAGTATGTGGACTTTGATCGGGAGACGGGAAAGGTGTACCTGAAGGCCCCTATGATCCTGAATGGAGTGTGTGTGATCTGGAAGGGCTGGATAGACATGCTGCGCCTGGATGGGATGGGATGTCTGGAGTTCGATGAGGAGAGAGCACAGCATGAGGATGCCCTGGCGCAGGCAGCCTTTGAGGATGCACGTAGGAGGACCCGGGACTTTGAGGACAGGGACCGCTCGCACAGAGAGGACCTGGAGcCCAGGCGACAGCAGGACCCCAGCCCTGGCACCAACATGGGTAACAACGCTGATGATCACAAGATGCGCTAGAGGCCAGCGAGACACAGGGAGTGGGTCAGGGTGATCTGTCCATCGTACTATGCCAGTCTCACACCCTGACATCAAGCTGTTAACTGGAGAGACCAAAGTCCACATTGCTGGGGatttgggggtggggtggggtgggattCCTTTTAGTTTTAAAGTGTGGGTTAAGGGGATCGACCCAAACCTCGTTGTCTTCTGCGGGGTTTTGCACTATGTGATACATTCAGTTTAGTCCCCACATTGCCTTCTGTATGCATGGAGCGCCTATCTATGTTTTCTTTTGTTCCCCTATGCAAAATATTTCGGAGGCACTTTCATTTACAATGCTTTATAAATAGGAAATGACTGGGTGATTATTAAATGGAACATATTTGTTCTTAAATAATAACTTATTTTCTaaatttatatactgtatttctaATGAATCCAAATGTCTGTTTCCATCTCCCTTATTATTTCCCAGAAATGTTGTTTTCAAGGAGCACCTGAGGAGCACTGAGCATACATTCGTTTTTGTTTTTCAAGTTTTGATGATTATTTATTATCAACTTCCATCAGGTAGTTTGGAAGTAGGCCTACCATTAAGTACAAATAGTTACTATTCAATCAcctatttattttgtattaataAAGGACTGTAAACGATTGCCAAAAAGCTATCTCTTATCCTATTATAGCACTATTttaatgaaattgtatttgttattattttattcatGTTTCGTTTGAAAGTCATGATGTTTACTTTTTGTATTTCTTTTctctatatacatactgtatttgtCAGTCTTTCTGCTTTCGTATGGGATGTTAGTAGAATATAGAAAGTTGTGTTCTAGAAAAGTTACTTTTACAAAGAGGCActttctgtcttcctgtctcctctttaatGTTATTGTACCAGTCTTTGAACATGGGACTCGCAGCACAGAGCACACAATGAGGTCAGTGCTGAGCTCGCTCTCTATAAATTGAGGCAAATAGACTTTCTCCTCtgcattgtttttttatttttattattctcTTTATTTCACGTTTCATCCAGATCAGGGTTTACAACGTCTAAGCAGTACATTTCTCCCAGAAAATGATGCAAAGGCACAGCAACATTGTCTCACTAACATACCCAACAGTTTTGTTTCGTATGTTTCAGGTtatctgaatatccttgagtttGATCAATTATTTAGCTGTTGTCAGTGTTTCCTTCTCTTCCCCTAGCGGAATAGTTGTAACGGTTTGTTCAAATAAAGTTGtcggtcacactttatttggatagtcccgtATAGATGATATACAGATGGTCATACGTTCAACAAGCTATCTGATGATAAGCAACTGCTCGCTAAAGTTATGGTTAAAGTTTGGTTTAGGTTTAGAATTTAAAATAAGGGTTAgcgttaaggttagggctagggttggggttagtggatagttagttgaaatgttgttGACAGTTATTGAACATCTACGAACCATCTACTTGGGACTacccaaataaagtgttaccaagtTGTTTGTACTGGAGATAAGAGAGAGCTAAATCTTTATAAGAGATAGAAGGCTTGCAATCCAACTCTGTTTCAACCAGTCATGAAATATTGGGATGAAATATGTAAAGAGTCAGTGAGGAGATGAAATAAGTCAGATAAATCACAGGAATGCAGGTGTGTATGTTATTCAGTTTGAACAGTGATGGATTGTACAGTCTGAGGCTCAATATTTGAAATGAAAGGAGAAAGTTAAGGTCAAGTCTAGCAACAGTAATGTACTGGTGGTTGTCCACCAGTCATTTGTAATGTATCAGCTCAGTATTTTATTCAAAGTTCATTTGCTTTAATTTGAATAAAGAGGAAAGGTGGAGGAAGTAGCCTATGTtttgtaaagggatgaatggtaGACATCAAGTTGTAAGATGTGGATGTGCAGGTCAGAAGTAATGGGGTTTAGGTGGACAGTGGGAGAGGCAGGAGTTTGTCACACTTTGCTGGGGAATCAAGTTCTAATTTCATACTGCATGTGATTGTATTTCCTTGGATTATGTTCTTAGGTTTTTATCCTAaatactttcatatcacataCTTGCATAATGTTTTACATCCCACTAATGATGCAGTTCTTTTGCATTTCTAGCTCATTAAAACAATGTGTATGGTCTTAGCCTGTTGCtttagtaaatcaaatcaaatcaaatgtatttataaagcccttcttaaatcatctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgttgaagcacagtGTGTCACCTTAAGTTAGCATACCAATGTAGGTAGCAGGAACGAACAGGTATATGCTACCTTCCACAGTGATGTTTATGCAATGTGTACAGTATTTCACCATTTTCTGAGAGCTCTATTTCAAATGGTTTGTTTGATATCTACTCCAGTGTATAGGGTACCCGATTAAAATATCAGTGCTCTTGAATAGAATTACAAAATGTATTGGACACTCAGAAACTAACTGGCCTACTTCCAGCTACAACCAAAAACAAATAGAAATATTGGGTATTTATTACTTCTCGATTTTGTGAACCTTTATTTGATTGAAATGTTGGTTAGATAGTACGATATGTTTGCATGAGGTCAGAAATGTCCAAACAACACTGCAGTTATGACAAATCCCAGCCTTGATTTCCAATATAATTCATCTTTCCCTTCATGTGTAGGCCTACTCCCCTGAGTCCCAGTTAGCTGTAGCCCTGTCTGAGCTTCACCCTTCACTTAATGCTGGCATTAAGGCAAGTTACACACCAGAGACTTTTTCCTAGTTTgctcacttaaaaaaaaaaaggtttatttTCTTATTTGTTTTAAGTTATTGATACAGGTTGACCTTTGTTGTGTTCAGGTTATGCTATGAAGAactgtgtatttctgtgtttaatgGCCTACCTTTTAAGATTTTACTGAATAATTtagttttctttctttctgttttaTGGTTTAGCTTGTTTAGCTTGTTTTTGTTAAGGGGCAATTTAAATCTGAAGTGTTGAATTTGATGTGTTTCATAATAAACTTGTAACAAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32212 lncRNA downstream 13040 27562507 ~ 27562707 (-) True G28113
TU32211 lncRNA downstream 13382 27561945 ~ 27562365 (-) True G28112
TU32162 lncRNA downstream 23689 27551330 ~ 27552058 (-) True mt2
TU32200 lncRNA downstream 28953 27546526 ~ 27546794 (-) True G28106
TU32168 lncRNA downstream 69599 27505403 ~ 27506148 (-) True G28074
TU32249 lncRNA upstream 19398 27629495 ~ 27629917 (-) True G28143
TU32391 lncRNA upstream 234136 27844233 ~ 27844580 (-) True G28278
TU32921 lncRNA upstream 234543 27844640 ~ 27845206 (-) True G28749
TU32935 lncRNA upstream 262720 27872817 ~ 27873059 (-) True G28763
TU32936 lncRNA upstream 264622 27874719 ~ 27875029 (-) True G28764
XM_036974885.1 mRNA downstream 655 27566356 ~ 27575092 (-) True LOC110520267
XM_021597454.2 mRNA downstream 656 27566356 ~ 27575091 (-) False LOC110520267
XM_036974887.1 mRNA downstream 656 27566356 ~ 27575091 (-) False LOC110520267
XM_021597409.2 mRNA downstream 23686 27551335 ~ 27552061 (-) False mt2
XM_021597382.2 mRNA downstream 30784 27507601 ~ 27544963 (-) True LOC110520211
XM_036974922.1 mRNA upstream 20904 27631001 ~ 27781767 (-) False LOC110520292
XM_036974925.1 mRNA upstream 25783 27635880 ~ 27781768 (-) False LOC110520292
XM_036974953.1 mRNA upstream 240455 27850552 ~ 27904492 (-) False LOC110520323
XM_036974963.1 mRNA upstream 240455 27850552 ~ 27904492 (-) False LOC110520323
XM_036974957.1 mRNA upstream 240455 27850552 ~ 27978660 (-) True LOC110520323
TU28962 other downstream 2293729 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2294717 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2624360 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2637046 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2710913 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 25991 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 447346 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 447346 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1093790 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1670179 29280276 ~ 29280700 (-) True G29906

Expression Profile