RNA id: TU32167


Basic Information

Item Value
RNA id TU32167
length 2297
lncRNA type sense_over
GC content 0.36
exon number 1
gene id LOC110520275
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27575747 ~ 27610097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGTTTACTTTTTGTATTTCTTTTctctatatacatactgtatttgtCAGTCTTTCTGCTTTCGTATGGGATGTTAGTAGAATATAGAAAGTTGTGTTCTAGAAAAGTTACTTTTACAAAGAGGCActttctgtcttcctgtctcctctttaatGTTATTGTACCAGTCTTTGAACATGGGACTCGCAGCACAGAGCACACAATGAGGTCAGTGCTGAGCTCGCTCTCTATAAATTGAGGCAAATAGACTTTCTCCTCtgcattgtttttttatttttattattctcTTTATTTCACGTTTCATCCAGATCAGGGTTTACAACGTCTAAGCAGTACATTTCTCCCAGAAAATGATGCAAAGGCACAGCAACATTGTCTCACTAACATACCCAACAGTTTTGTTTCGTATGTTTCAGGTtatctgaatatccttgagtttGATCAATTATTTAGCTGTTGTCAGTGTTTCCTTCTCTTCCCCTAGCGGAATAGTTGTAACGGTTTGTTCAAATAAAGTTGtcggtcacactttatttggatagtcccgtATAGATGATATACAGATGGTCATACGTTCAACAAGCTATCTGATGATAAGCAACTGCTCGCTAAAGTTATGGTTAAAGTTTGGTTTAGGTTTAGAATTTAAAATAAGGGTTAgcgttaaggttagggctagggttggggttagtggatagttagttgaaatgttgttGACAGTTATTGAACATCTACGAACCATCTACTTGGGACTacccaaataaagtgttaccaagtTGTTTGTACTGGAGATAAGAGAGAGCTAAATCTTTATAAGAGATAGAAGGCTTGCAATCCAACTCTGTTTCAACCAGTCATGAAATATTGGGATGAAATATGTAAAGAGTCAGTGAGGAGATGAAATAAGTCAGATAAATCACAGGAATGCAGGTGTGTATGTTATTCAGTTTGAACAGTGATGGATTGTACAGTCTGAGGCTCAATATTTGAAATGAAAGGAGAAAGTTAAGGTCAAGTCTAGCAACAGTAATGTACTGGTGGTTGTCCACCAGTCATTTGTAATGTATCAGCTCAGTATTTTATTCAAAGTTCATTTGCTTTAATTTGAATAAAGAGGAAAGGTGGAGGAAGTAGCCTATGTtttgtaaagggatgaatggtaGACATCAAGTTGTAAGATGTGGATGTGCAGGTCAGAAGTAATGGGGTTTAGGTGGACAGTGGGAGAGGCAGGAGTTTGTCACACTTTGCTGGGGAATCAAGTTCTAATTTCATACTGCATGTGATTGTATTTCCTTGGATTATGTTCTTAGGTTTTTATCCTAaatactttcatatcacataCTTGCATAATGTTTTACATCCCACTAATGATGCAGTTCTTTTGCATTTCTAGCTCATTAAAACAATGTGTATGGTCTTAGCCTGTTGCtttagtaaatcaaatcaaatcaaatgtatttataaagcccttcttaaatcatctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgttgaagcacagtGTGTCACCTTAAGTTAGCATACCAATGTAGGTAGCAGGAACGAACAGGTATATGCTACCTTCCACAGTGATGTTTATGCAATGTGTACAGTATTTCACCATTTTCTGAGAGCTCTATTTCAAATGGTTTGTTTGATATCTACTCCAGTGTATAGGGTACCCGATTAAAATATCAGTGCTCTTGAATAGAATTACAAAATGTATTGGACACTCAGAAACTAACTGGCCTACTTCCAGCTACAACCAAAAACAAATAGAAATATTGGGTATTTATTACTTCTCGATTTTGTGAACCTTTATTTGATTGAAATGTTGGTTAGATAGTACGATATGTTTGCATGAGGTCAGAAATGTCCAAACAACACTGCAGTTATGACAAATCCCAGCCTTGATTTCCAATATAATTCATCTTTCCCTTCATGTGTAGGCCTACTCCCCTGAGTCCCAGTTAGCTGTAGCCCTGTCTGAGCTTCACCCTTCACTTAATGCTGGCATTAAGGCAAGTTACACACCAGAGACTTTTTCCTAGTTTgctcacttaaaaaaaaaaaggtttatttTCTTATTTGTTTTAAGTTATTGATACAGGTTGACCTTTGTTGTGTTCAGGTTATGCTATGAAGAactgtgtatttctgtgtttaatgGCCTACCTTTTAAGATTTTACTGAATAATTtagttttctttctttctgttttaTGGTTTAGCTTGTTTAGCTTGTTTTTGTTAAGGGGCA

Function

GO:

id name namespace
GO:0048769 sarcomerogenesis biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045214 sarcomere organization biological_process
GO:0060047 heart contraction biological_process
GO:0016513 core-binding factor complex cellular_component
GO:0030018 Z disc cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32212 lncRNA downstream 13097 27562507 ~ 27562707 (-) True G28113
TU32211 lncRNA downstream 13439 27561945 ~ 27562365 (-) True G28112
TU32162 lncRNA downstream 23746 27551330 ~ 27552058 (-) True mt2
TU32200 lncRNA downstream 29010 27546526 ~ 27546794 (-) True G28106
TU32168 lncRNA downstream 69656 27505403 ~ 27506148 (-) True G28074
TU32249 lncRNA upstream 51395 27629495 ~ 27629917 (-) True G28143
TU32391 lncRNA upstream 266133 27844233 ~ 27844580 (-) True G28278
TU32921 lncRNA upstream 266540 27844640 ~ 27845206 (-) True G28749
TU32935 lncRNA upstream 294717 27872817 ~ 27873059 (-) True G28763
TU32936 lncRNA upstream 296619 27874719 ~ 27875029 (-) True G28764
XM_036974885.1 mRNA downstream 712 27566356 ~ 27575092 (-) True LOC110520267
XM_021597454.2 mRNA downstream 713 27566356 ~ 27575091 (-) False LOC110520267
XM_036974887.1 mRNA downstream 713 27566356 ~ 27575091 (-) False LOC110520267
XM_021597409.2 mRNA downstream 23743 27551335 ~ 27552061 (-) False mt2
XM_021597382.2 mRNA downstream 30841 27507601 ~ 27544963 (-) True LOC110520211
XM_036974922.1 mRNA upstream 52901 27631001 ~ 27781767 (-) False LOC110520292
XM_036974925.1 mRNA upstream 57780 27635880 ~ 27781768 (-) False LOC110520292
XM_036974953.1 mRNA upstream 272452 27850552 ~ 27904492 (-) False LOC110520323
XM_036974963.1 mRNA upstream 272452 27850552 ~ 27904492 (-) False LOC110520323
XM_036974957.1 mRNA upstream 272452 27850552 ~ 27978660 (-) True LOC110520323
TU28962 other downstream 2293786 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2294774 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2624417 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2637103 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2710970 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 57988 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 479343 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 479343 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1125787 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1702176 29280276 ~ 29280700 (-) True G29906

Expression Profile