RNA id: XM_036974957.1


Basic Information

Item Value
RNA id XM_036974957.1
length 4817
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110520323
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27850552 ~ 27978660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCTTTCGTGCAGCAGCAGTGATACACGCAGCAGTGATACACGCAGCAGGCGAAAGACTGGAGACAATCTTTTTTTCATTCTGTTTGACACTGAACGCAAAGTtgcgatttaaaaaaatatattttacattggaTTATTGGGAAAATTAACAAACGTGTGACATAGAAGAACAAGAGGAGAGTGTTTACGGTGTGTTGGAGACGGGAGCTCTGGACGTAAATGAGCTGGGCTGCGCCGCATTTGGTGGGCTGCTCCTAGCTCGGAAAATCCCACCATATCCCTGACATTTATTCCCAACTCAACCGGAACGGAGAACTGACACTGATGTAGATGCATTTTAAAGGAAAAACATGGAATAAAGGCTGACATCGAAGGCGTCCTGAAGAAAATAGCTTTTTTGCTGTTGTTGAAAAAGTAGCCAACAGCTTCTTAATTAAATAACCTATAAAAAAATTTTGTAGTCAAATAGAGGCATTGCCTACTCTAACAACACATCACAAGATGTCTGTTCCGAACGTTCTGGCCAAGGCCCTGTACGACAATGTGGCTGAGTCTCCAGACGAGCTGTCCTTCCGGAAAGGGGACATCATGACGGTACTGGAGCGGGACACCCAGGGTCTGGATGGCTGGTGGCTCTGCTCTCTGCATGGACGCCAGGGCATCGTCCCTGGAAACCGCCTCAAGATCCTGGTGGGCATGTATGACAAGGCTGGGCAGCAGCAGTCTCCACTCCCCCATGCCTCCCAACCTGGCCCTGCCCAGAGCCCGAGCCAGCTGGCCTTCCCCCCGCAGAGTGCCTACTGCaagccctccccctcctcccagtACACAGCCATGCACCCTGCCTTCTCCAACCCTGGGCCTGTCCCCGCCCTACCTGACAGCATCTACATGATGCCCCCCAACCATGGCAAGCTGCCTTCTTCAAGCCTGTACCAGATACCCATGGGCCCCCAAGCCCCACCCAAGGCCCCCATGCTCTCCCAGAAGAAGTTCCACGCTCCTGTTCAGGACATCTATCAGGTGCCTCCCTCAGCAGGAGGGCCTGGTCCTGGGCAGGATATCTACCAGGTTCCCCCCTCACTGAACCAGACTCAGGACATCTACCAGATCCCCCCCTCCATAGAGAAGAGGAGCTGGGACTCCTCCAAACCTCTAGGAAAGgtGGTGGTGCCAACACGGGTGGGTCAGGTATATGTGTATGACACAGGGAAGTCAGAGCAGGATGAGTATGACGTCCCCCCCAGACACCTGCCTCCATCCCAGCAGTCCCAGGACATCTATGACGTTCCCCCGACCCACGGCCAATACAACCAGCAGGTGTATGACACGCCACCCATGGTGGTGAAAGGCCCCCCCAGTGGCCAAGACGTCTATGACACGCCCCCCAGTGTGGACAAGAGCCAGCTGTTCTCCCAGCAAACGgTGTACGACTTCCCCCCCTCCGTCAGTAAGGATGTTCCAGATGCTCCTATCAGGGAGGAGACCTATGATGTCCCCCCCCACTTTGCCAAGCTGAAGAGTCTGGAGAGCCAGAGCCAGGGCTATCTGATCCCCGGGGGGCCTGAGCCCCCCATCCCTGAAGATGTGTACGacgtccctccccctcccctcaccgGCAAGCGCCACCCAGACGCCTATCACGCCCCCCTGGGCCAGGAGATCTACGACATCCCTGCCAGTCTGAGGAAGGGCGGACACCACAACCCCCAGGATGTGTACGATTTCCCACGTGAGCGGCCTGCGTGTGAGGACTCCATCTATGACGTCCCCCCTCAGGTGGTGAGAGACGCGGGTGCCACAGAGGAGATGACTGTCAGCTTCAAACGCCTGTCTGCCTCCAGCACGGGCAGCACCCGCAGCAACCTGTCCACCTCCTCTCTGGACATGGTGCCAGTCAGGGAGTCGGCGGTGCCCAGCCAGGCCGGCCCGGGGAAGCTGTTGATCCTAGACCTGGAGCAGGCCATGGAGTGCCTCTCCCACctacagcaggaggtggagggcTCCGTCTCCCTCCTCATGTCTTTCATCAGTGGGAACTGGCGCAGCCCCACCCAGATGGAGGCCAACCTGCCAGCCATCAGGAAGGCGGTGGACAGGATGAGGGCGGCCGTCAGGGACCTGCTCGAGTTTGCACGGGGGGCCGTGGCCAACTCTGCCCAGGCCACTGACCGCACGCTGCAGGCCAAGCTGGGCAAGCAGGTGCAGAAGATGGAGGAGGCCTTCCAGGGCCTGGTCAAGTACAGCCAGGCTCTGGACGCGGTGGGCTGGGCCCCCTCTGCTCAAATGGCACCCTTAGCAGGCAATGGTGGGGATGACTTGGACCGGCTGGTCATGTGTGCCCGGGGCGTGCCCGACGACACTAAACAGCTGGCTTCCTTTCTCCATGGCAACGCCTCGCTGCTCTTTAAAAGGACAAACAAGCAGCAGCAGCTTCCTCTGCCCCACGTCCCCCACACTACTGACCTCATGGGTCAGATGACCAATAACAACATCTCAGCTTATCAGACAGGAGACGGCAGGGCCAACATCCAGTCCCGGCCCCTGCCGTCCCCGCCCAAGTTCACGGCCGAGGAGGAGACCCATGACCGGCCCTACGAGACTACAGAGGAGGGCTGGATGGAGGACTATGACTATGTGCATTTACAGGGTAAGGAAGAGTTTGAGAAGAATCAGAGGCAATTATTAGAGAAAGGGACCAGACACAACAAAACCACACTGGAACGGCAGCAGCAGCTGAAACAGTTTGAGCGACTGGAGCAGGAAGTCAGCCAGCCAATCAACAATGACATCTCAGGCTGGACCCCGCCTCCCCACTATCCAGCGGCCCAGCGGAGCAAGCTGAGCATGGGCGACCGACAGCTGCTGCTCTTCTACTCGGAGCAGTGTGAGGCCAACGTCACCACCCTCACCAACGCCATCGACGCCTTCTACTCCtccatcaacaacaaccagccgCCCAAGATCTTCGTGGCTCACAGCAAATTTGTCATCCTCAGCGCACACAAGCTGGTGTTCATCGGGGACACGCTCTCTCGACAGGCCAAGTCCCCAGAGGTGCGGGCGCATGTGGCCCAGCACAGTAATGCTCTGTGTGACAAACTCAAGGACATTGTGGTGAGCACCAAGACTGCAGCGCTGCAGTATCCTTCCCCCGGTGCGGCGCGAGACATGACGGAGAGGGTGAGGGAGCTGGCCGGCTGCACACAGCAGTTCCGCATGGCTCTGGGTCAGCTGGTGGCCATGTGAACCTCCGGTCCTGAGACACTGACATGGGGAGTCCACACTGGGACACACAGCACCCACACACCTAGTGGGCCACTATCACAGACACATGGACCCTTCATCCTCCTCTTgtgctttttatttttaaaaaggaCAACTATCTGACTGGGCTGGGCCATAGGTTGTAAATGAATCATTGTAAATATTTAAGTTACTATTAGCCAGAAAGAAAATGTACTTCCACTATATATATGTTTTTGAGACCTTCTGGAAAAACTCAACAGGATGTAGTTTTTAGGCAAtgtccattattattattattgctaaactgtaattattGCTCTGATTATtataattgttattattattgttataatACGTTGATTAAGGATGTTTACATTTCAAACAAAATGTATGTAGTACTTAATGCTGTTTTTCATCCTAGATTATCAATAATGGTGGATTTTGTAAAAGTCATGTACTTAGGTGAGGTGGAGGATATGTTGACAGAAAATAAATAGCTTTCCTTAGAGCTGTCAAAGGAGGCTAGGCATCGTGTTGTGAGTGCAAGGCATTCTGGGTAGGACCTGGGAGAGAGAGGTTTCCATGACAGACAGTTAATAAAGTTCTCACTGCTGTCATGGGACAGGTTTCATTTGAGTAGCTCTACATGCTAATTAAAATGTCCCAATTAGAATACTGTATTTTAGTACCATCTCTTCCTTTGAGATTGAAGGAAGAATGAAAATAATTTTATGGTCAGCATTTCTACTTCCCTTGTTCGTCAAAAGCACAAAGCTTTGTCCGTCTGTCTGCTGCCACTAGAGTGCTAGTATTCACCACACTCTCCCAGACTCTCCTAGGCCTGCATGCTCTGTGGTCTATAGGGTTGCTTTGGACTCTTGTGACTCTGTTCTAGAAGTCTGTTCTAGAAGTCTCCTGTGCTCCATACCAGGCTCTCTGCTCACCTCCCAGAGGTGGAACTCTGCCTGTCCTCCCCCTAGCACTTCCTGGACAGCACTGCTGCACCCTGCAGGCCAGGGGAACCTGTAATGGTTAGGTGTACTGTTTGTGAGGATATaattggtgtgaaaagtgcattTGTTTTCATTAGCATGCACTCAACCCCCTTGTAAATTGATGAGCATATTAAGGAGTGGTTGTTTATGAGCTCCACCTCTGCTTTTTACCAAatggatgtacacacacacacacacacgtaagatATTGACGGTAATATCTGTTAGCCTAACATGAACCATTCTTGACACTATTCAAATCACATTGCAGCAGCTGTATCATATCCCACTTCAATAGCTGTACCAGAGGGATGTGAGTTAGCTTGGTCAGGGGGTGTGTTTTACTATTTCTTCAGTCCTGGAGAAATCTCCAAACAAAGCAGAGGAATCTGCTAACACTCTAGTTTCCATTGACCTGTTTTCTAAAACCTGACTGGTTGTATTCTAAGTATCAGATTATGTCAGAGGGGGAAGTTCAATGCAACATATTGTATTATAAAGCACTGCAACATGTTGTTGTGGATATAGTTGAAACCCCTATGAAGTAAAGAAATAATACATTGAAAACTAA

Function

GO: NA

KEGG:

id description
K05726 BCAR1, CAS; breast cancer anti-estrogen resistance 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32921 lncRNA downstream 5346 27844640 ~ 27845206 (-) True G28749
TU32391 lncRNA downstream 5972 27844233 ~ 27844580 (-) True G28278
TU32249 lncRNA downstream 220635 27629495 ~ 27629917 (-) True G28143
TU32167 lncRNA downstream 272452 27575804 ~ 27578100 (-) True LOC110520275
TU32212 lncRNA downstream 287845 27562507 ~ 27562707 (-) True G28113
TU33035 lncRNA upstream 41543 28020203 ~ 28020659 (-) True G28858
TU33141 lncRNA upstream 359016 28337676 ~ 28338209 (-) True G28949
TU33252 lncRNA upstream 434783 28413443 ~ 28496850 (-) True G29045
TU33306 lncRNA upstream 520415 28499075 ~ 28499343 (-) True G29095
TU33572 lncRNA upstream 715256 28693916 ~ 28694324 (-) True G29349
XM_036974925.1 mRNA downstream 68784 27635880 ~ 27781768 (-) False LOC110520292
XM_036974922.1 mRNA downstream 68785 27631001 ~ 27781767 (-) False LOC110520292
XM_021597473.2 mRNA downstream 240455 27575747 ~ 27610097 (-) False LOC110520275
XM_036974899.1 mRNA downstream 240455 27575747 ~ 27610097 (-) False LOC110520275
XM_036974915.1 mRNA downstream 240456 27575747 ~ 27610096 (-) False LOC110520275
XM_021597599.2 mRNA upstream 6189 27984849 ~ 28033545 (-) False cfdp1
XM_036974966.1 mRNA upstream 6189 27984849 ~ 28033545 (-) False cfdp1
XM_036974976.1 mRNA upstream 6189 27984849 ~ 28033545 (-) True cfdp1
LOC110532142 mRNA upstream 60262 28038922 ~ 28090334 (-) True LOC110532142
XM_021597712.2 mRNA upstream 120216 28098876 ~ 28104314 (-) False ctcf
TU32221 other downstream 207432 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 2568534 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2569522 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2899165 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2911851 24928348 ~ 24938701 (-) False LOC118956210
TU33047 other upstream 78783 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 78783 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 725227 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1301616 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 3153233 31131893 ~ 31132891 (-) True LOC110520932

Expression Profile