RNA id: XM_021597599.2


Basic Information

Item Value
RNA id XM_021597599.2
length 2374
RNA type mRNA
GC content 0.46
exon number 7
gene id cfdp1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27984849 ~ 28033545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATTGATCCTGTGGACGTGCCGTAGTAAATCAGGAAGTCAGATAAGCAAGCTACCATAGAATTACACAATGATCAATATAGATCCGCGCTCCTTTCTGTAGCTTGTCAACAAAGCCACACGTTTTCATATTTGTGAATACTTGTGTATTTGTTTGTTATTGTAATTGTAGCTATAATAAACTATACAGCTAGAAACATTTGTTAACTTTAACGGTTATTTAGTAACCGCGTGATAGCTACAGACAGGGTTCGTCAGATATCCGGTGCTTTGTAatttgctagctagccagttaTCCATCATACCTTTACTGCTGTGTTTACTAttgacagaaagtgtaggctctttCTGGAGGGGAAATGATGAATTACTCAGATTATGATTCCGATGGCTATTCTTCAAATGAAGATCAAGACTATGTCCCATCTGATGACAACCTCAGTGAAGATGACATGAATGAATGTGTGAAAGAAGATGGTCTGGAAGGGGATGACCAGCATGGACAACAGTCTGATAATGTCaccaagaagaaaaagaagaaaggCCAAGACATTGGCATGAGgaaaagaaagaaaggaggactGAAGTTAGAGGAGACAGAGCAGGATGGCAGTGTGGAGGAGCAGGAAGAAGGAGAGTTTTCTGATTCCAGGCCCAAGAAGGAGGTGGACgaagaaaaaaagaagaagaaagcaGATGATTTGTGGGCCAGTTTTCTGAGTGATGTTGGTCCCAAATCCAAGCCATCTATTCCATCACCACAGTCTACCACTAAACAGCAGGCTGCACCCACAGACAGACCGAAGAAGTCCACTGAGGCCCCATCAGAACGTCATCATTTAGAGCATAACTCTAAAGAGCCCTCTAAAGTCACCATCACTAAGGTCTTTGACTTTGCTGGGGAAGAGGTCCGAGTAACCAAAGAGGTAGATGCTGACTCCAAGGAGGCCAAGTGCTTTCTGAAGTCCAAGGAGGAGACACCAGATGTGTGGACTATACCCAGCAGACCAGAGCCCTCCTCCCTCGCCCCTGGACCCAGTGTGAAGAGGCCTGCAGGGATGGGCAGCATCCTGAACCGCCTCGGGGGGAAGAAACAGAAGATGAGCACGTTGGAGAAGTCCAAGATGGACTGGGACGCCTTCAAGGATGAGGAGGGCATCGGGGACGAGCTGGCCATCCACAACCGAGGCAAAGAAGGGTATGTGGAGAGAAAGAATTTCCTGCAGAGAGTTGACCACCGGCAGTTTGAGCAGGAAAAGAAAGTACGTCTCGGCAACATCATGAAGCGATGACAAGGAATAATAGAGGAGAGGTACGCTAACAATTGTGACACATGCGCGCACCACTCTGAACATGCCTGCCCAGTTCCCTCTCGTGTTTTCTCTTCCCAGTACTTGGCCTCTGGACTGCCCATGTGTTTGGAATGGCCCGACAGTACCTGCTACCTGCTGTTTTTGGACCTGCGTCAGATTTCACACTCCCAATCTACACACAGCACTCTCATTACACCTCCATCTGTTCCTGGACCTGCGTGTGACCCGAATCACCTAGACTCAGACCCCTGACTGTGTCTTCCTACCTCTATGAGAGGTGTGTTGGCAGTGTTAACCTGCTTACCTCAGCACATGGCTGTGTGGGTGTTCCTGTACTGAACATTTGTCAACATCATCACCAGGATGAAGAAAAGAAAGGAAAGCATTccaggagtgagaagaggagaaTGAGCAGCACAGTCATGATTCCACACCCTGAACTCTGTATCAGTCGTTATTGGCATTGActcgagagggaaagagatgaggAATCCACACACTGCTCAGATATTTGTGCCATCGCTCCACATCTCCTGCAGTGATTCGGGTTGGTATGCTGTTCATTGGAAGAGTTAAAGTTGCATTTCACCTCCCTGTTGTGCGGACTGCACTTCTCTGGATAAGTTCCAGCTAATCTGAGGAGAAAGATGTGTCTCACTCTGATGTACCTTAGTTATACCAATAACTATCACAGTTTCTGACATGATGCAAGATGAAAGATCTATGTTTCATGAACATGTCAGCTTAGCTGCTTCTTAAACCTGAGCTAAGAGGGGAGAGGATCACTGAGCGTTTCCTCAGCTACTGTTCTCCCAACGTAATGACACAGCTCCTATTACAAGGTAATTTTATGGTTGTTCAGTaacagacactcacacagacaggctAATTCAGGGACTTTATTTTTAGTTACAGGTTGTTAAATGAATGGGCTTCAAGTGTGTCTGAATAATAACGTCTCGTATTATTATGTCAGAATTTGGACTTGTGTTATGTTGTTATCctggtactgtactgtgtcaACTGTATAACATTGAATAAAGCACGCTATTTGGTTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32937 lncRNA downstream 109195 27875407 ~ 27875654 (-) True G28765
TU32936 lncRNA downstream 109820 27874719 ~ 27875029 (-) True G28764
TU32935 lncRNA downstream 111790 27872817 ~ 27873059 (-) True G28763
TU32921 lncRNA downstream 139643 27844640 ~ 27845206 (-) True G28749
TU32391 lncRNA downstream 140269 27844233 ~ 27844580 (-) True G28278
TU33141 lncRNA upstream 304131 28337676 ~ 28338209 (-) True G28949
TU33252 lncRNA upstream 379898 28413443 ~ 28496850 (-) True G29045
TU33306 lncRNA upstream 465530 28499075 ~ 28499343 (-) True G29095
TU33572 lncRNA upstream 660371 28693916 ~ 28694324 (-) True G29349
TU33582 lncRNA upstream 677460 28711005 ~ 28711265 (-) True G29359
XM_036974957.1 mRNA downstream 6189 27850552 ~ 27978660 (-) True LOC110520323
XM_036974953.1 mRNA downstream 80357 27850552 ~ 27904492 (-) False LOC110520323
XM_036974963.1 mRNA downstream 80357 27850552 ~ 27904492 (-) False LOC110520323
XM_036974925.1 mRNA downstream 203081 27635880 ~ 27781768 (-) False LOC110520292
XM_036974922.1 mRNA downstream 203082 27631001 ~ 27781767 (-) False LOC110520292
LOC110532142 mRNA upstream 5377 28038922 ~ 28090334 (-) True LOC110532142
XM_021597712.2 mRNA upstream 65331 28098876 ~ 28104314 (-) False ctcf
XM_021597685.2 mRNA upstream 65331 28098876 ~ 28105788 (-) False ctcf
XM_021597694.2 mRNA upstream 65331 28098876 ~ 28105789 (-) False ctcf
XM_021597702.2 mRNA upstream 65331 28098876 ~ 28106014 (-) False ctcf
TU32221 other downstream 341729 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 2702831 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2703819 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 3033462 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 3046148 24928348 ~ 24938701 (-) False LOC118956210
TU33047 other upstream 23898 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 23898 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 670342 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1246731 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 3098348 31131893 ~ 31132891 (-) True LOC110520932

Expression Profile