RNA id: TU32468


Basic Information

Item Value
RNA id TU32468
length 3355
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110520354
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28033707 ~ 28037291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggctatatacaggagatcaACCAACCCTTGACGACTTGCTAGCTAGATCCAACATTAATGTTCTGATGGTGTTATTCGGATATTCGTGGTCTCGCACACATGCTCGTTGTGTTCTGTGCATTAGACATGCAGAACGGATATAACGAGATTGGGTTTGTGCAGCAAATTCTTAGCTTGAATTTGGTCCCTAGGAAAAATGGAACCAATCGAGGCAACGACACATCGCTTAGCGACTTCTCAGGTGAGATTCATTCCACAGCTCCTCTGTTCTACGTTAGCCAGTTGAACAACATTATTATAAACTTTGTAACGTACATTTTTCGTTAACTATTATCCAGGTAACCGATTTAACGTAGCTAGTAATACTACTTAGTGAGCTACCACAGTCAAATAGACGTAAATCGTAACGTTTGGGTCTTACGTTAGTCCATTATTATTGAgctactttagctagctagatagctactaGCTAGATAAGTTAACATGGcttctactgtagctagctattgTGAATGCTAaacaagtagctagctagctagctaactttagctggctagctaatcaagtgctagctagccagctggcaATAACAACAAATATTATTGTACAAAACGGACAGCTTTTAAATTACCCATAACGTTAGGTAATCCACTAGAGTATTCTAATGGATTACCTAACGTTATGTATATATTACCTAACGTTATATATATTATTGTGAGagagattttatatatatatgtgtaatcGTTAGCAGCTTGGATTATTTTGCAGGGTGATTAAGGGGTCAGATTAACATAATGGGCACTAGGTAAGGTAGTATTTATTTCAGAAGACATGTCAGGCCACAGGCATGTGTAAAGTCTGTAAACATTGCAAGGCTATATGTTACTGCTTACTTCCTTTGTCTCAGAGATGTGGTATGGAGTCTTCTTGTGGGCTGCTGTCTCTTCACTGGTGTTCCACCTACCTGCTGCTCTCCTGGCCCTCGCCACCCTGCGACAACACAAAATAGCCCGCTTCATGCCCATTGCCATCATACTGATGAGTATCGTGGGCCCTGTGTGTGGTGGTGTCCTTACCAGTGCCGCCATTGCTGGGGTGTACAAAGCAGCAGGGAAGAGGATGATCTCCTTGGAGGCCTTGGTGTTTGGAGTGGGCCAGTCCTTCTGTGTCCTCATTATCTCCTTCTTAAGAATCCTAGCTACACTCTAGCACTGGGACACAGGAActcaaggagggagaggggggggggcatgcaATCAGCAGGACGGCATATGCAAGACAGCTGTTCCTTCAGAGGCCTTATTTTCTATATCTGTTATCGGATGACTTTGTTTGATACATGATTAGTTGCCAAAGTGGTATATTTCAGGGCTGGCCAGGGGCTCTGTTTTTCTATGTGTGTTATTTTTCATTCAGATTGTTGTGTGTTGCACTATACTCAGAACAAGCCTTCTCATTCTGCGTGTTATAGATGTATCATACACATAGCTGAGAATGAAACATTCCAGCATGCAGGAAATTTGTGCTCTACAATTTGGATGAGTACACTCCATTTACTGTCTCAATAGTTCCACAAGCTGATAAAGACTACAAGTCTGATGTGCATGCCATCAGACAAACACTAAAGGAGAGCATTCTCTGCTCTGTTCCACCACAGACCAATCAGCTTAAATACAATGTCTTGACTGAGGTGTGATGTATTCACAATGAGGCACAGTGCTCGATGATATTGAAATATAAATATCTAAGTCAGAAATAGCTACAACTTAAGCTTTTATTTCCACGTATAtagttctctttctttctctctccatattCCAACTTGGGGTGTGTCTAATtataattaaaatatatatatatatttaagtccATTCCAGCTTCTTCTGTAAGCAGAGGCAATAGAGAGAAGTGGAGACAATGAAGAGAAGGAAAGTTGTAAGTTCCCAATCTCTTTGTATATTGCTGAGCAAatcatagggaatagtgttgacTAAtctcatatttattttattttccttaaatataatttttttcaaTATTGTTAGGGTATTTTTAGATATTTGATCCGTGGGTTATATCAGTGTATATACAAAATACTTTTTCTGAGTGAAATCTTTACACAAAACAGTTGCAGACTGTTCTAAGTTCTCTGGTGGCGTCAGTGTTCTTATATAATTTAATATCTCTTGAGAACCTTTTCAGCATTGCTCTTTTTTTGTTCATGTTCTATTGGCCTTAATGATGTTAAAGGTGTACAGTATGTAGGAATAGTGTAATATATTGTTACTTTGGCATTGATAATGCTAAACTAATAAGAGGCAACCTCACTCTAAACCATGAATGTGAATCAGATTTCCTTAAAATTCCTTGTGGAATTTCTTAAATCTTTTTACCAAAGAGAACCTAAAACATATGTACACCTGATTTTAGTTTGAACTGATAGCCCCCTTGTCCCAAAATCTTGCTTTaattaagggctctattcaatctgtatcgctgaagcaTTACAGATTTCGGGgtgtaaaggtcatttccgattgagccgacatatgcagtgtttactgtgaatgcagtctctgctaatgCTGAAACACTGCCTTTAAATGTGATTTGCGCTGTAACGCTGAACTTCCGTAatgcggattgaatagagccctaaaggTTTCGGTATTGTGTCCAGACTTATAAATCATGAGCCGTGTGTAAGAACAAGGTAAAAGTCCAACTCCGCGAGAGAAAAGTCCCAATCCACCATAGAAAAGCACAGCTTTGCAGATGTCTCTATTCTAAGCCAAGAGTAGCAGACTAGTGAAATCAAGCATTACAGTCCAACAAAAAGCTTTTTGTGTTTTGTTATTCAGCATGGCTACATGCATATTGTTCAAAACTATCAGCGGTGTAGTGGTCATTAGTGCAGTAACAAAACCACATCCTTTTCAAAACACTAGTGTGGTGGACTGGTTAGAGGAACACATGAGGATGGTTGGCCATCACACTATTTGGTAGTGGTTCATTATTGTAATGTAGACAGATTTGTGGTGATTAAAGTTTCTTAGCTGCAGGCTAGAGCTGTTCTGTCTGGCAGTGATATCATGAGGGGTGACATGTTGAAAGCCATGCTCTGCTTGTCTGGGCCTTGAACACCTCAATTCCAcagaatgtttatttttctaAAGTTCTTTAACTTTCCTTATTGTAGCATGACTGCACACTACTGTTTGTTATATAGCTAGTTGGTTTGTCTTGCTTTAAATAAATGAATGCTCTTTATTTCCCATGTGATTTTAATCCATGGATTGATTTTGGTTTTACAAGACAAGGTTGATTTTATTACATTAAATTAAAGTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32441 lncRNA upstream 129273 27903718 ~ 27904485 (+) True G28321
TU32417 lncRNA upstream 150545 27882584 ~ 27883213 (+) True G28300
TU32412 lncRNA upstream 159505 27874032 ~ 27874253 (+) True G28296
TU32402 lncRNA upstream 170547 27862488 ~ 27863211 (+) True G28289
TU32400 lncRNA upstream 174997 27858321 ~ 27858761 (+) True G28287
TU32556 lncRNA downstream 26590 28063840 ~ 28068937 (+) True G28423
TU32616 lncRNA downstream 115475 28152725 ~ 28153789 (+) True G28473
TU32624 lncRNA downstream 121619 28158869 ~ 28208029 (+) True G28480
TU32631 lncRNA downstream 130678 28167928 ~ 28187722 (+) False G28487
TU32632 lncRNA downstream 130678 28167928 ~ 28187760 (+) False G28487
XM_021597536.2 mRNA upstream 193501 27834798 ~ 27840257 (+) True LOC110520308
XM_036974932.1 mRNA upstream 203180 27816479 ~ 27830578 (+) False LOC110532139
XM_036974943.1 mRNA upstream 203180 27816632 ~ 27830578 (+) True LOC110532139
XM_021597442.2 mRNA upstream 469452 27560102 ~ 27564306 (+) False LOC110520258
XM_021597421.2 mRNA upstream 473971 27553386 ~ 27559787 (+) True LOC110520245
XM_021597725.2 mRNA downstream 205320 28242570 ~ 28288088 (+) True pard6a
XM_021597743.2 mRNA downstream 294718 28331968 ~ 28338395 (+) False tsnaxip1
XM_021597752.2 mRNA downstream 294718 28331968 ~ 28338395 (+) False tsnaxip1
XM_036975065.1 mRNA downstream 295630 28332880 ~ 28338395 (+) True tsnaxip1
XM_021597814.2 mRNA downstream 301050 28338300 ~ 28346361 (+) False nutf2
TU32398 other upstream 178804 27853757 ~ 27854954 (+) True G28285
TU32393 other upstream 188747 27844640 ~ 27845011 (+) True G28280
TU31781 other upstream 468606 27563381 ~ 27565152 (+) True LOC110520258
TU31782 other upstream 470895 27562319 ~ 27562863 (+) False LOC110520258
TU31559 other upstream 717241 27313822 ~ 27316517 (+) False G27553
TU32543 other downstream 10376 28047626 ~ 28048362 (+) True G28416
TU33696 other downstream 1028406 29065656 ~ 29067795 (+) True LOC110520661
TU34064 other downstream 1155479 29192729 ~ 29253218 (+) False mef2aa
TU37662 other downstream 3813223 31850473 ~ 31850969 (+) True G33249
TU37697 other downstream 3919280 31956530 ~ 31961547 (+) True G33284

Expression Profile