RNA id: XM_021597694.2


Basic Information

Item Value
RNA id XM_021597694.2
length 5472
RNA type mRNA
GC content 0.48
exon number 11
gene id ctcf
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28098876 ~ 28106017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTTGCAGGAGCTTTAATCGGCCTCTAGGTGTCACGATGGGGCTCCCGGTCCAGGCGGCAGACGGGGGGTGTTTGTCTCCCTCTATCGTTATTGAAAATTTAGCAAAAAACATTTATAACCCAGAAGTTCAACAATTTTGCAATAACGACTGTTTTTGGAGCTATATTAGTTTGCATTTCGGCAAGGATCGATCATTAAAGACTTCAACGTGTTGGTTTAGTTTTAAGGCCAGGCGTCCATTTTCTTTTTCTTCGTCTTTGTTTCCTGCCTTTTTACAGAGTCGAGATGGAAACTCGCGGCTGTGTATCAACTCAGCACGCGCCAGATTGCAGCACAGAACAACGAATTTTCTAAATCGCACATGCATAATCTTGCTACAGTAACTATCATAGCTAGCTACATACAGTTAGCTAACTAGCCATTCAACGTATAACTGGTTAGCTAGACCGCTAAGTTAGCTATGTAATGTCACTTTCCACGCCATTAACTAGTATTGTTAACGAACTATTAAAGCTATAAATTATCGAAACAATAGTAACAAAACTAAGTGTTTTCGCCCACAATGGCCTTCGCAaaagctaacgttagcaaacCCCTACCATTGGCCTAGCTAACTTGGATAATTAGCTAACCGTTAGTTTGATCTGTTACGTTAtagtttagctaactaattaTCATATATTAAAAGCTGGCAATTAAAACAAGGTCTAAGTCACGATGCAAAGACGATAACAAATTTTAGCAGGCGCCAGCATcttactagctaacgttaggttacgttacagtagctagctagcaacataaACGTTAGGTTGACAAATTGGCTTCTAGCGCATGCCGAATTCAAACAATTAAGATGCATAACCAGCAAATGACCACGATAGCCATTTTCACTAGCGTTTCCAGTAAAACGACGTCCCCCTTCGCCCTACATTTAATGAGCACGTAGTCTAGATTTTTGTTTAACGAAATGTCTTCTCCAAGCTTACTGCAGTTCATTTTCCACCCAGTGTCCGTTGTCTGTTTCAAAGCCTACCTTGAGCTACAACGACACTAGCTAGATAGAATTTATCAAAACAGGGTAGAGCTCCCTCTACAACCCAGCTGGTAGCGGTACATAAACATGACtagctgacgttagctagctatatgaCTTCATGTACGCTATCAAAATTGCGGCCCGCAATTGCACCCTTCGTAGAATGGCCCAACTAGCTACGAATGTGTCTGTGCTTTCAATTCATGCAGTAGGTTTATGTAGAAATGTCAACTTGTTTGTCTTCCCCACAGGTTCAGTGTCAGGTAACAGTCAGGGGAGTTGAGTCAGAAATTGAGGAAGCCAAGCAGGTCTAGAAAGATGAAGTATTCCTTTCTGGTGCAGGTATTACCGATGGACGGCGGACCAACCGATGTTGTGGTTGAGGCCAAGGACAGCATCACCtatgagggggaggaggtggtggcaGACCTGCTCCAGCAAGCAGCAGAGGGGGTAATGGACCAGCAGCCTGTGGGAGAGGGGGGCCTGGATCCCCAGGAGCTGGTGGATGGAGTCAATGTGGAGATGATGGTAATGGATTCCCTGGACCCTGCCCTGCTGCAGATGAAGACTGAGGTGATGGACGCCCCTGTGATCACAGCCCACGAGGCCACGGTCACCACAGTGGATGAGACCCAGATCATCACTCTGCAGGTTGTCAATTTGGAGGAGCAGCAGCTTGGAGGCCTTGGGGAGCTACAGCTGGTCCAGGTGCCTGTCTCTGCTGTGCCTGTAACGCAGGCCACTGTAGAGGAGCTACAGGGCACCTTCGTGGACGCCACGGCCATGCCCAAAGATGGAAACCCTATGATCTGCCACACCCTGCCCCTGCCAGAGGGCTTCCAGGTGGTGAAGGTGGGTGCGAATGGTGAGGTGGAGACGGTGGAGCAGGATGAGCTCCAGCACCAGGAGGAGCAGCAGGTCCagcctgaggaggaggaggaggaggaggagctgcaCTGCGAGACCCAGCCTGACGACCCACAGTGGACCACAGACCCAGACTACCAACCCCCGGCCAAGAAGACTGCCAAGAAAGCAAAGAAGAGCAAGCTGCGCTACAACACTGAGGGGGACAAAGACAACATGGACGTGTCTGTCTATGACTTtgaggaggagcagcaggagggGATGCTCTCTGAGGTCAATGCAGAGAAGGTGGTGGGCAACATGAAGCCCCCCAAACCCACCAAGATCAAGAAGAAGGGTGTGAAGAAAACATTCCAGTGTGAGCTGTGTAGCTACACCTGTCCCCGCCGCTCCAACCTGGACCGACACATGAAGAGCCACACGGACGAGAGGCCACACAAGTGCCATCTGTGTGGAAGGGCCTTCAGGACTGTTACCCTGCTGAGGAaccacctcaacacacacacagGTACCAGACCACACAAGTGTCAAGATTGTGACATGGCCTTCGTGACCAGTGGAGAGCTGGTCCGACATCGTCGCTACAAACACACTCATGAGAAACCCTTCAAGTGCTCCATGTGTGACTATGCCAGTGTAGAGGTGAGCAAGCTAAAGCGGCACATCCGTTCCCACACTGGGGAGCGTCCGTTCCAGTGCAGTCTGTGCAGCTATGCCAGCAGAGACACCTACAAGCTGAAGAGACACATGAGGACACACTCAGGAGAGAAGCCGTATGAATGCTACATCTGCCACGCCCGTTTCACCCAGAGTGGAACCATGAAGATGCACATCCTGCAGAAGCACACAGAGAACGTGGCCAAGTTCCACTGCCCCCACTGTGACACAGTCATCGCCCGCAAGAGTGACCTGGgcgTCCATCTGCGTAAGCAGCACTCGTTCATTGAGCAGGGACGGAAATGCCGTTACTGTGATGCTGTGTTCCACGAGCGCTATGCTCTCATCCAGCACCAGAAGTCCCACAAGAATGAGAAACGCTTCAAGTGTGACCAGTGTGACTACTGCTGCAGACAAGAGCGTCACATGCTGATGCACAGGCGCacgcacacaggagagaagccgtacGCCTGTAGCCAGTGTGAGAAGACCTTCCGTCAGAAGCAGCTCCTGGACATGCACTTCCGGCGCTACCATGACCCCAACTTTGTGCCTACTGCCTTTGTGTGCACCAAGTGTGGCAAGACCTTCACCCGCAGGAACACCATGGCCAGACATGCAGAGAACTGTAATGGGGATCCTACTGAAGGAGAGAACGGAACCCCACCCAAGAGAGGACGgggtgggaggaagaggaagatgcgCTCAAGGAAGGACGATGATGACGACGATAGTGAGGACAATGCTGATCCTGAGCTGGATGACATTGATGAAGAGGATGAGGATGCCGAAGAGGCActgctggaggaagaggaggaggaggagatggagttgGAGCAGGCTCCACCCACCAAGCCTATCCCCGCCCCTGTGGAGCCGCCCGTCAAGAGGAAACGGGGTAGACCCCCCAAGAATGCGCCCAAACCTGCCTCACCTGCCAAAGCTAGCAAGGCTGCCCCTAAGGGCAAGGCTGCTGCAGCAGCCATCATCCAGGTGGAGGATGAGAATACAGGTGTCATAGAGAACATCATAGTGAAGAATGAGCCAGAGGCTGAGCAGGCTGCcatagaggtggtggtggagcaGTCGgaggaggcagaggcaggggtggagaCAGTGGAGCTGCCTGTAGCAGAGGCTGCCCCCAATGGAGATCTCACCCCTGAGATGATCCTCAGCATGATGGACCGGTGATCTAGCCCAGACAGCTCGAAGACGTCCCCTTGTCCACCCTCTTCATACAATCTGCCATATTACAAACCACTCCGCTTACACTTTAtttttatcatttgtttttaacaTCTGTTTCTTTTCACTCAAACCCACATCCTTCCATGCATTCACTGTAACAGTTAAAGTTGCTTTGGTCTGTAGAAATGTAGATTTGGTGAAATAATGGCTCCATTCTCTACTGTAATCTATTGGTGCATGGAGGGGGGTGGTAGCTGAGGTTTGACACATGGTGGACATTGGGACTTAATGCAGTGGTCAGttgcacaccccccccccccccccccccaatctaacAACTATTTTCGTAACCTGTTTGTGACCTTGACATGGCAACAGTGAGTGCCAAGTGAGCCTTGTAATCTAGAACCTTATATCTGCTGTAGACTAAAATTAACTTTAGCTCGGCATGTTGATAGGAATGGCTTTCTTTTAAAAAACGTTTTATTTACTGCATATTCCATATGACTTATTATTATACTTGTCACAGATTCTGAAGTTTGTAGAGGCTTCGATCAACATCAGGCCAGGGACAATGAGATCGTCCATCCAAAGTTTAAGACTGCGGTTGATATGTTTGTACAAAAGGTAGTCTGGGCTCGTTTTGCTTGtaaatactttttattttagttttattACCAGCATTTGAATCTTTTTCTAGTGATTTAAAGCCCTTTAATGCTGGAGGAAAGGAAGTCAACCGTAGCTGTtttgaacacaggctgtaaatgGCTTTCTTATCTCTAATGTGGGAGGCTTTGCCTACTTTAAGAATCATGTTGGCTATATGACCTTCCATGTTTTGAGCTTTTTAGCCTGAGTATTTGTAGCGCATTTATGGGAGGTACATTACTCACTCTTATCCCACTGTTCATCCCAAACCACAGTCCACTAATGCTCTAGTTTTTGAAAGATGACCTTGTTTTGCATTTCAAGATGAGGTAAAGGCATTCATATTCTTAAAAGCTTTAGTAAAGATCTGTGAAATTGTTGAGCAGGGGTATTCAATTCTTCCACtatgaggtccggagcctgctggttttctgttgtacctgataatgaattgcacccacctggtgtcccaggtctaaatcagtctctGATTTGGAGTGGAACAACAAATCAGTGATACTGGCTCCGGGGTTCAGAGTTGAATTTGACGGCTGTAGAAGGTGTCCAATTGGACTAGCTTCAGGTCTTAGCTGTAAATTAAATATGATTATTGAGGCTTTGGTAATCTTGTGAAGCAAAATTTCTCCCAGTTCACTGTTAATTTCTCAGACCATTTTGTCATAACTGCATAGTTTTATTGTGGGATGTGTACAGGAGAGAGCCTTGAGAAATTCTGATAATGACGTTcaaaaaggggaggagagaactGAGGGAAGGATATTTTGTATAAAGTTTGTTACTTGTTTAAGATGACTATTTACTTTCTTTCACAGAACATTTTTAATGCTGATACAACCTGACTTTTCCTCCTATATGTAATTGCGTTTAAATTGCTTTTTGTCAAGCGCTTAAATTCTGGGTTGATCATTTTTGTACCTGGCTGTACTGTGTGAATTTAGCAACGATCTGAAAACCAACATAAATACATGTATTATGGCTGGGTTGGGCTGAGAGGGCATGTATGAGGAATGTACAGCTAATAAAAAGATATTGGCCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33035 lncRNA downstream 78217 28020203 ~ 28020659 (-) True G28858
TU32937 lncRNA downstream 223222 27875407 ~ 27875654 (-) True G28765
TU32936 lncRNA downstream 223847 27874719 ~ 27875029 (-) True G28764
TU32935 lncRNA downstream 225817 27872817 ~ 27873059 (-) True G28763
TU32921 lncRNA downstream 253670 27844640 ~ 27845206 (-) True G28749
TU33141 lncRNA upstream 231887 28337676 ~ 28338209 (-) True G28949
TU33252 lncRNA upstream 307654 28413443 ~ 28496850 (-) True G29045
TU33306 lncRNA upstream 393286 28499075 ~ 28499343 (-) True G29095
TU33572 lncRNA upstream 588127 28693916 ~ 28694324 (-) True G29349
TU33582 lncRNA upstream 605216 28711005 ~ 28711265 (-) True G29359
LOC110532142 mRNA downstream 8542 28038922 ~ 28090334 (-) True LOC110532142
XM_021597599.2 mRNA downstream 65331 27984849 ~ 28033545 (-) False cfdp1
XM_036974966.1 mRNA downstream 65331 27984849 ~ 28033545 (-) False cfdp1
XM_036974976.1 mRNA downstream 65331 27984849 ~ 28033545 (-) True cfdp1
XM_036974957.1 mRNA downstream 120216 27850552 ~ 27978660 (-) True LOC110520323
XM_021597656.2 mRNA upstream 597 28106386 ~ 28145819 (-) False ripor1
XM_021597630.2 mRNA upstream 597 28106386 ~ 28145821 (-) False ripor1
XM_021597638.2 mRNA upstream 597 28106386 ~ 28183797 (-) False ripor1
XM_021597646.2 mRNA upstream 597 28106386 ~ 28220829 (-) True ripor1
XM_021597796.2 mRNA upstream 188659 28294448 ~ 28325594 (-) False ranbp10
TU33049 other downstream 32571 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 36426 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 455756 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 2816858 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2817846 25280592 ~ 25281030 (-) True G25115
TU33578 other upstream 598098 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1174487 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 3026104 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 3320334 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3878982 31984771 ~ 31986150 (-) False G33386

Expression Profile