RNA id: XM_021597796.2


Basic Information

Item Value
RNA id XM_021597796.2
length 4518
RNA type mRNA
GC content 0.43
exon number 16
gene id ranbp10
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28294448 ~ 28338523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcgttacccatgcagagcaaggggaacaactactccaagtctgatctgcaCAGCTTCCTAGGCAACCACCACAGCAGGAATGCTGTGATACAAAATCAGCTTTCCCAAGGCAAAGAAGGGGGGATATGCTGTGAAGACAGACCCAACATATACTGCCATGGGAAGAACCATAAGGATGCCGCGTCTGTGCGTGCCACTCATCCCATACCAGCCGCCTGTGGGATCTACTACTTTGAAGTGAAGATTGTCAGCAAGGGCAGGGATGGGTACATGGGGATTGGTCTGTCTGCCCAGGGGGTCAACATGAACAGACTGCCTGGTTGGGACAAGCACTCATATGGTTACCATGGCGACGACGGACACTCCTTCTGTTCTTCAGGGACTGGCCAACCATATGGCCCAACCTTCACCACAGGCGATGTGATTGGCTGCTGTGTGAACCTAATTAACAACACCTGTTTCTACACCAAGAATGGCATCAGTCTAGGTGTAGCCTTTACAGATCTCCCTCCCAACCTTTACCCCACAGTGGGCCTGCAGACTCCAGGAGAGATTGTGGATGCTAACTTTGGCCAGCAGCCCTTTGTGTTTGACATTGAGGACTATATGAGTGAATGGAGGGCTAAGATCCACGGCATGATCGCCCGTTTCCCCAtcggagagagactgggagagtggCAGGCAGTGCTTCAGAACATGGTATCCACCTACCTGGTGCATCATGGGTACTGTGCCACAGCCACAGCCTTTGCCAGGGCTACAGAAACCTTGATCCAGGAGGACCAGACCTCCATaaagaacagacagaGAATACAGAAGCTGGTATTGGCAGGGAGGGTTGGCGAGGCCATCGAAGCCACACAGCAGCTGTACCCTGGGCTCCTAGAACACAACTCCAATTTACTGTTCATGTTGAAGTGTCGGCAGTTTGTGGAGATGGTGAACGGTACAGACAGTGAGGTACGATGCTTCAGTGTCCGCTCCCCCAAGTCCCAGGACAGCTACCCTGGCTCCCCCAGCCTGAGCCCCCGACATGGAGCCACCAACCCACATCTGCACAGCGCAGGAGCAGACAGCCCAACATGCAGTAACGGGGTCACCCCTCCCAACAAGAACAAGAGCCACAACAAGTACCCTGGTGTcagctctgcctcctcctcttcctcttcctccccttcctctgttAACTACTCTGAGTCCAACTCCACTGACTCCACCAAGTCCCAGCCTCACAGTGGCACCAGCAACCAGGAGACCAGGTGTGTGGCAAGTGACAGTGAGATGGAGATCGAGGCAGAGCACTACACTAATGGGGTGGCGGAGAACTCCTCTACTCGGATCATGAACGGCACCTACAAGCATCAAGAAATCCTGCAGGCTGAGGACGGCAGCCTGGGCAACGGAGTGGCAGAAGACAGCTGTGCCTCCAGACAGCTGTGTGGAGGGAACCAGGCAGCCACAGAGAGGATGATCCAGTTTGGCCGCGAGCTGCAGGGCCTCAACGAGCAGCTGTGCCGGGAATACGGCAAGAACGCCACGCACAAGAAGATGCTGCAGGATGCATTCAGTCTATTAGCGTATTCAGATCCCTGGAACTGCCCAGTTGGGCAACAGCTAGAcccaatgcagagagaaaatatCTGCTCTGCTCTCAACAGCGCCATCTTGGAGTCTCAGAACTTGCCTAAGCAGCCCCCTCTGATGCTGGCTGTAGGTCAGGCCACAGAGTGTGTCCAGCTCATGGCCAGGGTCCGCTCAGGCTCCTGTTCCTTCGCCAGAGTTGACAGCTTTTTGCACTAGCCCcagtccagGCAATGTTCAGGACTACAAAGAAGATCACTTTCCAATGGGTTGCCAGATGACTGAGGAGACCATGTGTTTGAATTGGTGTGTCGCTTGCCATTTGGCAGAAGCAGGATGTGCAGGGGAATGAGGAGAAAGCTTGTTTTTAATTTAGTATTATCAAATACAAAATGTGTGACACTATTTAAAGATAATTAATTATTATTCTGTTTATATAGTCATTTTCAAGTTTTTATTTGGTCAGTTTGTTGTGCTCATCTTGAAAAAAATAATCGAATTCCGTTTTTGTTTTTATGAGTGGATTTGAATTCCCTACACAGTATTTTAAAGATGTTCATCATATCAAATAAATTCACATTGGCATGCTTTGTCGTTACCAAGCAAGATACTCTGGTTTCTCATTCAGAACTTTCACAGGACTTTTGTCGTCTCAGTATAAGATATTGTAGAAAGAGGACCAGAATTTTTTTGGTTCAAATTCTTACTTCTTAGTATGCCTTAGTACTccaaaaatggattcaattgaaaGTTAAAGGTCTGAATTTGATTCTGAGACTGCACGTGGCTGTAAGCCACTAACCCGCTGGTCACCTTAAAGCCCCAGATGGTTGCACAAATTAAATAATGACACTGATTCATTTCGGAGTTTCAATATAAGTGTAGTGTATTTCCAATCAAGTGTCTCCACTAGTTTGATGTGTAacataggctgcgtttacacaggcagcccaattctgtttttttttcttcttcactaATTGGCCACTAATACATCTTTTGACCCAATCAGATATGtgctgaaaaagatctgatgtgatcggtctaaagaccaattagtggaaagaaGATCAGAATTGGGTTGCCTGTGTTGGGCTGCCTTATGTTACACATTAAACTAGTGGAGACACTTGATTGGAAATACACTACACTTATACTTTGTACTTGCACACAgtaaaaacacacagacatacagtgctTGGGTCGTTTGAATTTGGATATCACTCCTGGTTTTTACTTGCTAATTGTATTGAAGATACCTTTTATGAAGTCAGATGTTGAATATATACAATATAATGATATATTGAATAAAAAAGTGGAACTATTTTCCAAATACAAGGCTTTTAATTTGACCaacttttctaataaccaatggTACTTGCCAGTTGCCACACTTATTCCACACAGTCAGTCTATCAGTCTTTTCATATTAGTGCTTTGAAAGACCATTGTCTTATCATTGCCAACATGCTTATTCTGGCTTTCTTGCAGTTCTATTTTTCTCACACAGACCCAGTCATTTTTACAAATGTGGCCACAACtttgtttcttgtttgtttttgttcattGTATTCACAGTTGAATGTGTTTTGGTCTTTTTTGTTACAGTATGTATTCTcttatatttaacagatgttctCTTGGCACAAATGTTGATCATTGATGTATTAACCCAGTATTTCAGCCAGCCAGCAGGAGGCGCTCCACTGTTTGTTGAATGTAGTTTAGCAGATTATATTACATTTATGTTTCAGATTAGCTGCTGGCCATCATGAGATTGATATTGACATCCCCTACACCTGTTAGACATATTGCAATGTGTTTCATTCACTTTTTGACAATCATGTAAAGCATGTTTGTGAAGCAAAGGGCTGGTGGGAGTAGAAATCATCAGCTTGCAGCTTGTTATTAGTGTTTGGTAGACTTTAATATCCCTTAACATTGTTCACAAAGGCCAtttggattattattatttttttttttacacaatctTTACATTTGCACATCTATCTGCATCATGGGCTTATACTTGCTAAAATATGTGAAAAACAAGAACAAATACCTTCACTTACTTGTGAGGGTCCTCTTTTGAATTGCAGTAGGAAGCAAAAGAAAGGGCCTCATGACCTCATCCAAAACCTGTGAGAGTCAACTGACATACTGGGGCGTACTGTCTTTTGAAGCATACCTATACACATTGTAACCCATGTTGGAATCAAATTTGAGTTATTTTAACTCATGTTGTTCAGTTAATTAAGTCTCTAGACGGCCCTATCCGTTCACATGGGTTTTCACTATTCTGTTTAATGGTCATTCAGAATACAACCAGTCCTAGGCTTTCAATATTGGAAGCAGACAGCAGATAGGTATTGATAATAGCTTGACATTATAGCAAATCATGTATCTCTTGGTTTCTTTCAAAAACAGCAAATGGCTTTTTGAACTCAATAGAATAGCCACCCAAAATGTATATTTCCATTTTAAGAGAATTCATTATACAGTAGAATTTGTAACTTGACTAATATATAGGGATGTGTGTGTAGAAAGGGAGGAATCTGTTGAGCTTCTCCTGGGACTTTTATGGACACACCTACACCTACTCTAGCAAACAACCTCCCagttttccttttctgttttaaATTGGCCTTTGGAGCTATCCGTGCTTCAAATGGAGAGGCGAAGGTAATGGAATTAGGAATTGAAAACAAGCTGTGCACAATATACTTCTATTATGATTTACATTTCATATTGAGTTTAGCATTTGTGAAATGAGTTACCCTGTACTTAGCATGAAACTTTTAAAACCTTAAACAATAAAAAAGaaattataatttaaaaaaacatacctATGTACTGGAAACATGATAAAGAAATATTGTATTCTGTTTTATTTTGACAGAATTATTTTTATTAAAATACACATCCATAAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33035 lncRNA downstream 273789 28020203 ~ 28020659 (-) True G28858
TU32937 lncRNA downstream 418794 27875407 ~ 27875654 (-) True G28765
TU32936 lncRNA downstream 419419 27874719 ~ 27875029 (-) True G28764
TU32935 lncRNA downstream 421389 27872817 ~ 27873059 (-) True G28763
TU32921 lncRNA downstream 449242 27844640 ~ 27845206 (-) True G28749
TU33141 lncRNA upstream 12082 28337676 ~ 28338209 (-) True G28949
TU33252 lncRNA upstream 87849 28413443 ~ 28496850 (-) True G29045
TU33306 lncRNA upstream 173481 28499075 ~ 28499343 (-) True G29095
TU33572 lncRNA upstream 368322 28693916 ~ 28694324 (-) True G29349
TU33582 lncRNA upstream 385411 28711005 ~ 28711265 (-) True G29359
XM_021597646.2 mRNA downstream 73619 28106386 ~ 28220829 (-) True ripor1
XM_021597638.2 mRNA downstream 110651 28106386 ~ 28183797 (-) False ripor1
XM_021597630.2 mRNA downstream 148627 28106386 ~ 28145821 (-) False ripor1
XM_021597656.2 mRNA downstream 148629 28106386 ~ 28145819 (-) False ripor1
XM_036975023.1 mRNA downstream 188431 28098876 ~ 28106017 (-) True ctcf
XM_036975172.1 mRNA upstream 209563 28535157 ~ 28661448 (-) False necab2
XM_036975159.1 mRNA upstream 209563 28535157 ~ 28661451 (-) False necab2
XM_036975166.1 mRNA upstream 209563 28535157 ~ 28661453 (-) True necab2
XM_021597913.2 mRNA upstream 337945 28663539 ~ 28737301 (-) False hydin
XM_021597922.2 mRNA upstream 337945 28663539 ~ 28737301 (-) False hydin
TU33049 other downstream 228143 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 231998 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 651328 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3012430 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 3013418 25280592 ~ 25281030 (-) True G25115
TU33578 other upstream 378293 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 954682 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2806299 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 3100529 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3659177 31984771 ~ 31986150 (-) False G33386

Expression Profile