RNA id: XM_021597743.2


Basic Information

Item Value
RNA id XM_021597743.2
length 2757
RNA type mRNA
GC content 0.48
exon number 16
gene id tsnaxip1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28331968 ~ 28338395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTAAACATAACAACTCGGTCGTGAGCCTGAAGTGTTGGCCTGAAGTGAAGCAAATAGCTAGCTAACCTAATTGAAGAGGGATTAAATGTTAATGTATTTGGTAACTAGCTAGCTCGCTTGTTTGCTGCATCTAAACATAACAGATGTCGACACAGAAAGATATTAGATTACCACCTTTATCATCGTTTGAACGACTGTCGTCTGAGTGTCAACATAACGCTGAAAAAAGAACTGGGCGACAAGTGGCAATTGGCGGTCCTGGCTCATGTAGAGCATCAACCAGAGTTGGCTGTACTTCAGGCTACCTGTCAACCTGGCCTGCCCATGTCACCTCTCAAGTTGTTCAGCAGGGGAGGAGACACACTTCAGGTGGAGAGATCAGGAACCATGGATGCGGTGATGAGTTTGGTGGCCCTGTGGGGAAGCCACGATTCCTGGAGCAGCTTGAAAGCTACCTAAAGAAGGAGCTGCAGGCTCTTGACTTACAACAACCAAAAGTCCAAGAGCGCAAACTACAGGCATACCGGGAGGTCTTTGGCTGTTTCATTGAGGACTTCAAAACGTACAAGCCGCTTCTGTGTGCCATAAAAAATGAATATGAAATCACATTAGCATACCTACGGGACCAGATCCGGGAGCTGGAGCCTCTCCGTGCTCGTCTGGTTGTGGtgtcagagcagtgtgaaaaGAGGATCCTGGGCctgcgagaggaggagagggtagagattAGAGCTCTGAAGCAAGAGCGCCAACACCGTCAAAAGGTTATTGAAAACATGAGAGAGACACAAAGTTCCCTGCAGACCCAGGTGTGTTGTCTGCAGGCAGACCTGGCCGCTCAGTATCTGATGTACAGAGAAGAATGTGATGCTCGCAAGCTGCTCATCGCCAACATCAGCAGCATGAGCTATGGACCAGATGAGGAACCCGAGGAAGAGCAGGAAGAAGTGGAAATCGAGGACCCAGTGAAGGAGAAATTGGCTCTGAAGGTGTGTCGAGAGGACCTGACTAAAGCCCAGGTGGAGCTAAATCGCTTGCATGCGGAGTATGGAGACGTAGTTCCCCGCCGTGACTGGGAGACGTTGGACCATACCCACAAAGAGAACTTGCTTAAGCTGGAGACCCTGCAGAAAGACTTTGATCAGATGAAGGCTGAATATGACACACTGCTTGAGGTGCACAAGCAAGTCACAACACAGAGGGACAGCCTCCAGGGAGAACTGGAGGGCTTCAAAGAGGCCTCTACCCCCAGGCCAGAATGGGAGCAGTGTGCAGACGTACTGGGAGGTAGTGAGCGTTGGGCAGATCTCTCCCAGGGCCAGTCCAGCCAGCGGCGTTTGGAGATCCTGCTGGCAGAACTGGGAGGAAAGAACTCAGAGTTTTTCACTGGACTGGGTACTTCTGATGATGTGCCCATATACCTGCGCTATGAGGGGCAGTTAAAGAACCATAGGCTAAAGAAGAATGCGGTTGTGAGAATCCTCAAGGAGGTTTGGAAGGAGAAGGTCATGGAGGATGGAAGGAGAAATGAAAGCAGCAATCTTCCCGAGTTTCTGCGGCAACATCTGGAGAGACAATATGGGGAAAAGGCTGGAGAATGGGCTTATAGCTTAGTAGAGGGCATTCGTCAACACCAAAAGGATGACTCTGTCAGCCTCTTCAATGACATTCTCACAGGAAAGGTGGATGAGAGTGTGTACCATGGTCAGACACATCTACTGTCTAACCTGCTGAAAGTGTTGAtccacagtgacagtacagaGAGTGGGCTGCTCAGTGTTCAGGATTTCAGAGATAACTTGCAAATGGCCTTCCCTCTGAAAAGAGCGCAAGACATCGATGAGCTAGTGACCACAGCTCAGGCCGAGCTAGACAACAACGGTGGGAGCCTCCCATACCAAAGACTGTATACAGAGGATGCAGATGGGAAACACAAAGACTTCCTGAATCTGGTGAAGAAGCAGGCCTCCACAGAGAGGCATATGTATATTAGCCAACTGAGGACTCAGCTGGGAGGCAAAGGAGAGGTGACTGTGGCTGATCTAAGGGCTGCCTTTAAGAACATTGACCCCTCTCTGGACGCTACCACACTAGACTGGGTCCTAACTATGGCATTTCAGATACACCAGGAGGAGCtagagcagcacacaacacaaaTGGACACAGAGCTGGCCCTGCAGCACCTCCTGGCAATAGATGTGACCAGGGCTGGGCCTGCACCACAACAGGACTGAATCGCTCTAAGCACTTTTAGAAAGTGGTAGCCAGTCAGGCATCGAACTGTTTCTTTGCTATCATTGTGGCCTGCAAACTCATGAAATATTTCCAAAGGAACCAGGTTGAACATTAAACAAACACTTAAACGAACCGTTGTTACTGAAATTATCTGTAAGTCAAATGTGTTTCACACAGTAATTTATTATCGGTGTCAGAAATGGAATATTTACGTAAAAACATTAGCATCCCAAAGATGAGCTGTCACATACTTCTCTGATGTTCTAGTAACCAGGCTAGCAAATTGTTCACCGGAGCAGTGTGGCTACTCAATTCAAACGTCTGTTTATAGTAGCATACAGTGCCATTAGAACTGTGCCATCTTGTGGATGCAGGCATGTAAACCATGGCCATTCTACCCATCCTTATAAATTTCCACAACAAATGTAGTTTACCTTCATTAAAGTGGGCTGATTTAAAAGGTACCATATTTTTGTATGTTGAGAGTTTCGTGTGGGTGGAAAAACCTACCAGCTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32624 lncRNA upstream 123939 28158869 ~ 28208029 (+) True G28480
TU32632 lncRNA upstream 144208 28167928 ~ 28187760 (+) False G28487
TU32631 lncRNA upstream 144246 28167928 ~ 28187722 (+) False G28487
TU32633 lncRNA upstream 144246 28184378 ~ 28187722 (+) True G28487
TU32616 lncRNA upstream 178179 28152725 ~ 28153789 (+) True G28473
TU32802 lncRNA downstream 158657 28497052 ~ 28497367 (+) True G28636
TU32805 lncRNA downstream 161330 28499725 ~ 28499948 (+) True G28638
TU32824 lncRNA downstream 196772 28535167 ~ 28610883 (+) True G28653
TU33441 lncRNA downstream 338831 28677226 ~ 28677802 (+) True G29227
TU33443 lncRNA downstream 341787 28680182 ~ 28680381 (+) True G29229
XM_021597725.2 mRNA upstream 43880 28242570 ~ 28288088 (+) True pard6a
XM_021597619.2 mRNA upstream 294677 28033707 ~ 28037291 (+) False LOC110520354
XM_021597536.2 mRNA upstream 491711 27834798 ~ 27840257 (+) True LOC110520308
XM_036974932.1 mRNA upstream 501390 27816479 ~ 27830578 (+) False LOC110532139
XM_036974943.1 mRNA upstream 501390 27816632 ~ 27830578 (+) True LOC110532139
XM_021597821.2 mRNA downstream 254 28338649 ~ 28346361 (+) True nutf2
XM_021597842.2 mRNA downstream 8146 28346541 ~ 28385332 (+) False LOC110520482
XM_021597833.2 mRNA downstream 8147 28346542 ~ 28385332 (+) False LOC110520482
XM_021597852.2 mRNA downstream 8644 28347039 ~ 28385332 (+) True LOC110520482
XM_021597865.2 mRNA downstream 49573 28387968 ~ 28444370 (+) True nrn1la
TU32543 other upstream 283606 28047626 ~ 28048362 (+) True G28416
TU32398 other upstream 477014 27853757 ~ 27854954 (+) True G28285
TU32393 other upstream 486957 27844640 ~ 27845011 (+) True G28280
TU31781 other upstream 766816 27563381 ~ 27565152 (+) True LOC110520258
TU31782 other upstream 769105 27562319 ~ 27562863 (+) False LOC110520258
TU33696 other downstream 727261 29065656 ~ 29067795 (+) True LOC110520661
TU34064 other downstream 854334 29192729 ~ 29253218 (+) False mef2aa
TU37662 other downstream 3512078 31850473 ~ 31850969 (+) True G33249
TU37697 other downstream 3618135 31956530 ~ 31961547 (+) True G33284
TU38120 other downstream 4112459 32450854 ~ 32452385 (+) True G33681

Expression Profile