RNA id: XM_036975172.1


Basic Information

Item Value
RNA id XM_036975172.1
length 3339
RNA type mRNA
GC content 0.43
exon number 13
gene id necab2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28535157 ~ 28661453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATTGGCCCCATAGCGCTCAGCATGAACGCTCCGGTGCAAAAGGATGTGTGAGCAAGCAGCGCGCTACTGCAGGGACGGTGTCCACAAACTGCTCCAAAAAGAACAACCGAAACTCCGGGCTCAGGACAGCAAAGAGCAACCAAAACCCGTGGACCAGGACAGCGAGTCAGCAACGGCTGCACAGTCCGGAAACAGCGGCGCCCAGCCCGGTGCAATTGACGGGCTCGTCCGCTGGATAGTCACCAAGATGAGCGACAACAAAAGCATCTCTACCCGGGAATACGCGAAGGAGGAGGCGTCGGTTGCCCAAGAGCAGTTCTTCGCACCAGAGCCACGGAAAGGCATCTCTGTTATATTGGATATTTTCCGGAGAGCTGATAAGGATGATGATGGGAAGCTGTCTCTGGACGAGTTCCAGGCGTTCTTCTCAGACGGAACGCTGAATGAGGAGGAGCTGGAGAATCTGTTTCACTCCATTGACTCAGATAACACAAGTAATGTTGACACTAAGGAACTCTGTGACTACTTTGTCAAACACATGGGTGACTATGAGGGTGTACTGGCCTCCCTGGAGACTCTCAACCTGTCCATCCTCAGAGCCATGGACTTCACCAAGAAGGTGTACGAGCGAGGGACCAACGTGGAGCAATTTGTTACTCGCTTCCTGTTGAAGGAATCAGCAAATCAGATCCAGTCTCTGCTAAACTCGGTGGAAAGTGCTGTGGATGCTATTGACGAGCAGCATTGTAGCCAATCAGGGTATCCCACTAAGGTCAGTCCACGGGTTCCAGAGAAACGTTATGAAAAACCAGTGCCTGACTACCCTCCTAACAACAGAGTCCGTACTGCCAAGGATGTTGCCCCAAGGAACATCAACACTGCTACAGGGGTGGTGGAGGTGAGGAAAGAGACTCTGGAGGCACAGATCAACCGACTGGCTGAGCTGATTGGACGCCTTGAGAACAAGACAGTTTGGTTTGACCTGCATCAGAGGCTAACAGACACTGATGGCACAGCCAGCGCATCCCTGTACCTGATTCGTCAGGAGATGGCGGTATCCCAGAAGCAGCTGGGAGAGTTCTGCGAGGCCCTGAAGCAGTACCTGAAGAATGTCTCTGCCCAAAGAGACTGCTTCCATGTGACTGCAGTGCGGCTGCCAGATGGACTCTCCTTCGTGGTGTATGAGTtctgggatggagaggaggagtggaaaaAACACCTCCAGACTGCATCTTCCAAGGCCTTTCAACATGTTAAAGTGGACACTCTGTGCCAGCCCGAGGCTGTGTCCACTGTCGCTGTGCCAGccgCCTGGTGCAGCCTGAGCAGAGACTGACGGGGGTGAGGCCAGATTGCCTGAGTCTGCAACACCCACCATCCTTAGCTCCCCCTTAACCTCCCTCACCCTCacaacccctctctttctctcttttgtaAGTACATGTTTACACAGTGTCTGTTTGATATTGAGGCAAAATGGAATGTGTCAATTGCAGTGAATATTGAACAGTGCATTAAAGCGAGATTACCTCCATCCAATGCATTTCTTCATCATATCGTTCACCCTCAAGTCATGGTAGAAATGACGTGAACTGTTAACCTGCTTTTGAGGCTCTCGTGCATGTCATCCATTTTGACTAAAGACATGAACCTGCTACTGCTAATGGTAGACTAATAGAGCACTCAACATTCGTCTCTATCAAGCAGTTAAGGTTGTTTTTTCCGTTGTGTTAAAAGTAAATGTATGAATCAGCACTGGATATATTAGCTGTTAAAGTCTAGTAAAATTATATGAAAAAatgttatattataattatatttgTATTGATGTCTTTCGTGATACAGTGCAAAATTATGAAGAAAAAGCAATTACTACAAAAGTAGCAAAACTTGGTTTGCTGCAGCAGTTCCCTTTTTGACCAACACAATCTCAAGCCTTAAACATCAGCATATGGTTGAGGTTGTAAGTGGGTACCTAGGTAGGATTTCCCAAAAACACACACTAATTAGATTTTAAACATCTAACGCACAGCCCCATCTTACAATCACAATGTTCATTGCAATTGAGCAAAAAGGAGATGTTTACACACCTATCAAGCAAAATGATAGTAACAGAAAATATATCAGAATGTTCACCCACCAGCCCAGTTAGAGAAGAACCTCTTGTGCACATCTAGGACCATGACGACTTTGTCCAACCCCAATTTCACCAACCTGAAATCAACATGATCAAACAGAGACCTAGTCAAAAACCACAATGTACATAAATGGAATATAGCGATTAAGATATATAAAGTATGAGAGTATTAGAAATGATCAAAATATGAATGTTATCTATAAAGAATAATGTATGAATCACTCATCTTGATCAACCTTTAGAGGGCGGAATATTTCACCTACTTCGCCATTGAATTTCTTAGTTTGTCCTGTAAGCACATGAAGGTCATGGCAAGCCTGTCCTTAACCAATGGGGGAATATCAAACTCTCCCTCCCCAGGATAACATTCTCAGATAATATCAAGTAATAACAAATACTGTCCTTGTgcactgtaaaataaataaaacggtTTGTTTACTTGCCTTTGATCATAACTAGGACCACCACTGAAATGGAATGAACTCATGTCCAGTTCAATCTCTGGTGCTAGGCCACATTACACTTTACCTTGAGAGAACCCTGGACTTCTCAGTGTTAATGCACCTGTGATATTAATCAATAATGAATAGCACGCCTTGGGCTTTATATTAGCCTCAGCATCAGTATTACAGAATGGAGCAAGTGCATGGATCCCTTGTTGACAGACGTGGGGAAATTCTACTGGAAAGGTTTTCTATTTATCCGTTGCTTCTGTTGGGTTCTGTATGAACAGGTCAGAGCCAgccagacaaaaaaaaaatgccaATACTATTTCTATAACATTCCTGGCTGTTCCCTAAACTGTGCAATCAATTTTTTCTCTCCTTATCCCTCACTTGAGTGCATGTTCAAATGAATGTCCAGTAACTTATTTGCTGTAGTATTTAGCCATGCTATTTTCAATGGGTTTTGTgcatttcttatttttattttatagtaTTCCTATAAAggacagatgaaacaaaaatatatatgaataGAAAATGCCATACAGAATGAACATTCACTTTTATGGCAATGTTTAATGAAATACTAATTCTTATACTTATGTATGTTTCAGTAAAATGGCTTTCTCTCTTTGAGTGTAGAGACTTATTGCAGGGATGCAAGTACTATATTTAGTCTTAACGTTGTTGAAATTCTAGATAATGTAGAGTGATGCAACTCAATAAAATGGTAATACTGAAATAAACCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33306 lncRNA downstream 35814 28499075 ~ 28499343 (-) True G29095
TU33252 lncRNA downstream 38307 28413443 ~ 28496850 (-) True G29045
TU33141 lncRNA downstream 196948 28337676 ~ 28338209 (-) True G28949
TU33035 lncRNA downstream 514498 28020203 ~ 28020659 (-) True G28858
TU32937 lncRNA downstream 659503 27875407 ~ 27875654 (-) True G28765
TU33572 lncRNA upstream 32468 28693916 ~ 28694324 (-) True G29349
TU33582 lncRNA upstream 49557 28711005 ~ 28711265 (-) True G29359
TU33588 lncRNA upstream 56794 28718242 ~ 28718493 (-) True G29365
TU33592 lncRNA upstream 65962 28727410 ~ 28731732 (-) True G29369
TU33626 lncRNA upstream 86864 28748312 ~ 28749506 (-) True G29384
XM_021597802.2 mRNA downstream 196634 28294448 ~ 28338523 (-) True ranbp10
XM_021597763.2 mRNA downstream 204523 28294448 ~ 28330634 (-) False ranbp10
XM_021597772.2 mRNA downstream 204526 28294448 ~ 28330631 (-) False ranbp10
XM_021597781.2 mRNA downstream 204528 28294448 ~ 28330629 (-) False ranbp10
XM_021597790.2 mRNA downstream 204531 28294448 ~ 28330626 (-) False ranbp10
XM_021597913.2 mRNA upstream 2091 28663539 ~ 28737301 (-) False hydin
XM_021597922.2 mRNA upstream 2091 28663539 ~ 28737301 (-) False hydin
XM_036975199.1 mRNA upstream 8362 28669810 ~ 28737308 (-) True hydin
XM_021597978.2 mRNA upstream 132718 28794166 ~ 28830946 (-) False LOC110520584
XM_021597987.2 mRNA upstream 132718 28794166 ~ 28830947 (-) True LOC110520584
TU33049 other downstream 468852 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 472707 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 892037 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3253139 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 3254127 25280592 ~ 25281030 (-) True G25115
TU33578 other upstream 42439 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 618828 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2470445 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2764675 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3323323 31984771 ~ 31986150 (-) False G33386

Expression Profile