RNA id: XM_021597987.2


Basic Information

Item Value
RNA id XM_021597987.2
length 3387
RNA type mRNA
GC content 0.40
exon number 11
gene id LOC110520584
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28794166 ~ 28830947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCGTGCAACCCCCGTCGATTTCAGCCTATTGACTGGTGTAACCAGTAGTGTTTCTTCAGTCGATTCACTCCTTGACATTTAACGGTCTTGTCTACTCTGCTGTTTGAATAAACCCGAGACGCATATTTTCTAGATTAATTAAAAACACATTGCTTGAAATCAAATCTGAGTATTTTTTGTCGAAGCAAGCCTGATTCTACATTTACTTTTATCTAATTAATTCAAACTGTAGGTTATTTAGTATTAATTTTAAGACAACATGAAGACGAAATTCATCAACGGGGTGTCATCCTCCCCTTCTATGTCGTTGGGTTTGTTGATCACTGAAAATGCACTTGAGGTGCAGCCAGATACTGAGGATGAATGCAAGGACATCATCCGGCCGGATGAGCCCGACCTGGACACGAAGCGCAAGGCATATTTATGGTGCAAAGAATTTCTCCACGGTGCGTGGAAAACGGTGACAGAAGAGGACTTTCAAATCAGTTTAATAAGGGGTGGCCTCAGCAACAAGCTCTTCCTCTGCGCCCTGCCCGACACCCAAACCAGTGTAGTTGATGAACCCCGTAACGTCCTCCTGCGCCTGTATGGAGCTATTCTACAGGGTGCTGAGGCCATGGTGCTGGAGAGTGTGATGTTTGCCATTCTGGCAGAGCGGGAGCTTGGGCCCAAACTCTATGGCATCTTCCCCCAGGGCAGACTGGAGCAGTTTGTCCCTAGTCGCAAATTGGACACAGATGAGCTGAGCATGCCAAGCATATCTGCTGAAATAGCTGAGAAGATGGCCAAGTTCCATGGTATGAGGATGCCTTTCAACAAGGAGCCCAAATGGCTGTTTGGAACTATCGACAAGTACCTGAACCAGGTGATGAGACTAACCTTCACCAGGGAGTCACACATTCGCAAGTTTGCCCGTCTGAGGAGCTATAATCTGCCCCAGGAGATGGAGAGTCTCAAATCTTTGCTGGACTCCACTCACTCCCCTGTTGTTTTCTGCCACAATGACTGTCAAGAGGGAAATGTCCTGCTCCTCAGTGGTCGTGAGGGCTCTGACGAACAGAAGCTCATGCTGATTGACTTTGAATACAGCAGTTATAACTACAGGGGATTCGACATAGGAAACCACTTCTGTGAATGGATGTATGACTACACAAATGACAAGTTCCCATTTTTCCATGTCAACTCAAATAATTATCCCACTAAAGCCCAACAgCTGCATTTCATTGGAAGCTACCTGTCAGAGACTGACCAGGGTTTCCATAATCTGAGCACTGAAGATCAGATTAAACTCAAAGAGGAGCTGTTTGTGGAAGTCAACAGGTTTGCTCTGGCTTCGCACTTCTTCTGGGGTCTGTGGTCGATGATTCAGGCGAGAATCTCCACCATTGAGTTTGGGTACATGGAGTATGCCATGGCCAGGTTTGATGCATACTTTGAGCAGAAGCGGAGCCTGGGTGTCTAAGTGAGGGACCACATATAGTAACAAGGAGGTGGAAGATAAATGGATTAATAGCGCTTTACCTGAAATGAATGCAGACAGGGTGTAGGACCATGCTTAATGGTGACCCCCTGCTTTGGGAATGAAATGCTCACTACAGTTGTTATTGCATGGACCAAAGTGAAACCATGAATATCTGGTTTGGTGTTAAATTAGGCCCCATGCATTGCTGCTCAGTATTTACACAATATTAAGCTCCTAATATTACACATACTCACAGGGCACAGTTGGTTCTTGGCTTGTCTTTTCAACAAAATATCAGACAGATTAAGACGGGATAAAAAATCTTCATTCTGAAAGGAGGTCTGAGTTACATCTCTGGGAAGTCTATTGCTGTTTGGAAATGTACTGGGATAGTGGAAAAGAAAGGAAGTCTCAATGACCCTTGCTAATTGAAAAGCCAGTAATCTGTGACCTAACTGTGATAAGCCAAATGGCCATGTTGACTCAGTGTCTCAGTTTCAATTGATTATGTTTGGTTCTTTGCATCCATGCTCAGTTTTCCTCCATTCTTTATCAACTGAAATTCCTCTAAAATGACTTGTATATGGAAATATCTAGAACCTCCAATGAGATGGGAGCATCTCTGGCCAACAGCATTTTTTTTCCACCTGCAGTACTGTGAATATAATGTGCAAAATGTGACCTGAAATACACTAGTGAAGGTAACCTCGCAACTCTACTCTGTACTTACTCTTACTTTACACAGCCCCCAGAAATGGTTTCAGCTCtgaatatgtcattgaaccaGTAATGATATTTAAACAGATATATTCATCAAGAACACATTGGATAATACATTGGTAAGGAAATAGCAAGCAGCAAAGCTTGCTATTCAGCTGGGTTAAGCAGTTGTAGATGAAGTTGTGAGAAGAACTGTTAGCAAGGTGTGACAAAAATCCTCATGTAGAGGTTTTGAATGTTTATAATGATATCTTTAGAATATGTTTGGGGACTGGAAATATTTACTTGACTTTTTTTCCAATTCATAACCGAACTGTGAgaattattgatgttttatatatgAATTTGTATTCTGTATTTCATCATATTTGTTTTATGTAAAATAGTTTATTTAATCTTGTTACAATGTTATTGAGACCGTTATGAGCCTTCACTTTGAAATGTCATCGTTATATATAATGTCAGTGTCACTTTTTTTCGTTCACCAGACACTTCTTCCCAATGCTTGGATGCAATTAGCCTAGGGACGAGGTTAGTGGCACTTTCCTGACCCAGTTTATTTTTTAAGATAAACTTTTTCTATTTTTTCTTCAAATGAAATAAGTATTTTTCATAATAAGAAGTTGTCTCTTTCCTATGAAATATGTCTCACTCCTGTTTTCTCCACACCTCCTACAGAATTGTGTGATCAACTACATTCCATTCTCATGTATTTGTATATACCTTACACCTCTCTTTCATGCTATATTATTAGTTTGAGACAAAATAAGAATTGATCCAACTGTTTTCAAATGTAATTGACAGTGTCACATTCAAATTTCTGAGTACATCCTTGGTGTATTTCATGTCTTGCCATCCAATacagtgatcaaatcaaatgtacatGTAATTGATTATCAAACATGGTAAGAAGGAGCTCCTCTACGTTACACTGAATATTGTTgataatgtatattgtatacttATGGATAGTTGAATTGAGTGTCCAAATTTGTTTATGCTGTGAAAGGAACCCAACTACTCTATTTTGTGCAAACATTTAGCCTTGCTTAGCTATACAGGTATGCAAATACTATAAAAGAAGAAACAATGTACTGTATAAAATAGTACGGGTTAAGTGCTTTGTAAATGTACCACTATTGCAAGTGCATACATTTACTGTACCTTCTACTGCATTGTATAAATACTACAGCAAAGAGGAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K14156 CHK; choline/ethanolamine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33622 lncRNA downstream 27186 28765648 ~ 28766980 (-) True G29380
TU33623 lncRNA downstream 28623 28764298 ~ 28765543 (-) True G29381
TU33620 lncRNA downstream 30503 28749977 ~ 28763663 (-) True G29378
TU33626 lncRNA downstream 44660 28748312 ~ 28749506 (-) True G29384
TU33592 lncRNA downstream 62434 28727410 ~ 28731732 (-) True G29369
TU33637 lncRNA upstream 322 28831269 ~ 28831491 (-) True G29395
TU33614 lncRNA upstream 2622 28833569 ~ 28833765 (-) False G29376
TU33613 lncRNA upstream 2723 28833670 ~ 28834943 (-) True G29376
TU33651 lncRNA upstream 31310 28862257 ~ 28862761 (-) True G29409
TU33663 lncRNA upstream 42625 28873572 ~ 28874071 (-) True G29421
XM_036975199.1 mRNA downstream 56858 28669810 ~ 28737308 (-) True hydin
XM_021597913.2 mRNA downstream 56865 28663539 ~ 28737301 (-) False hydin
XM_021597922.2 mRNA downstream 56865 28663539 ~ 28737301 (-) False hydin
XM_036975166.1 mRNA downstream 132713 28535157 ~ 28661453 (-) True necab2
XM_036975159.1 mRNA downstream 132715 28535157 ~ 28661451 (-) False necab2
XM_021598007.2 mRNA upstream 4331 28835278 ~ 28841685 (-) False LOC110520608
XM_036975304.1 mRNA upstream 4331 28835278 ~ 28841690 (-) False LOC110520608
XM_021598056.2 mRNA upstream 4331 28835278 ~ 28841692 (-) False LOC110520608
XM_021598015.2 mRNA upstream 4331 28835278 ~ 28841812 (-) False LOC110520608
XM_021598024.2 mRNA upstream 4331 28835278 ~ 28841920 (-) False LOC110520608
TU33578 other downstream 89810 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 727861 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 731716 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1151046 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3512148 25281604 ~ 25282018 (-) True G25117
TU34164 other upstream 449329 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2300946 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2595176 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3153824 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4276172 33107119 ~ 33108497 (-) True G35075

Expression Profile