RNA id: XM_021598032.2


Basic Information

Item Value
RNA id XM_021598032.2
length 3488
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110520608
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28835278 ~ 28842650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTTAAATGTCCATGGGTTTCAAGTTTGAGTAAGCAATGCGCAGGCTAATGTTATTTACATTTATAGGGCATTTATAAAGCGCCAGATCTCGGATTGCAGGATGAATCACGTAATAGTACAAACGCTTGAATAACAAAATCTTCAAGCACAGATTAGAGTATATGCGCCTGACTCTGGCGTAATGAAGTAGATGGGGGAATCAAAGAACATGGTGTTGAATGGCAGGCGGCATGGCAGCAGATTCTCCAGTGATCTATCCATAACCTCGGCCAGGTCGCTGCGACAGAGCAAGGGCTCCTTTAGAAGCAGGAGATGTAGTCGACgTGTCAGCAGTTCTGCCCTAGAGGCAGAGAGACGTCATACCCCATCATCTGGTATGACTGCAAAAGAGCTCTGTGAGAATGATGACTTGACTACAAGCCTTATTCTGGACCCCTACCTCGGCTTCCAGACCCATAAGATGAATCGGAGGTTTCGACCTGTCAAGGACCGACATAGACAGTTGAAGGAGGTGCTAGAGTGCTTTAAAAAACATGACAACCTTGAGAAGGCCTTCCTTGCCTTGACTGCAGGGGACTGGTCAAGACACCACTTTCCGCACAAGACGAAGGCACAGGGCAAACTCTTCAAAGAGCATGTTTTTGTCTACCTACGAATGTTTGCAACGAACAGTGGGTTTGAAATACTTCCTTGCAATCGTTATTCCTCTGAGCAGAATGGAGCCAAAATTGTAGCAACAAAAGACTGGAAAACCAACGATAAGATAGAATACCTGGTGGGCTGCATCGCTGAGCTATCGCAGAATGAGGAAAGTGTGTTACTGCGACATGGAGAAAATGACTTCAGTGTGATGTACTCCACCCGCAAGAACTGTGCTCAACTGTGGCTGGGACCTGCAGCCTTCATCAACCATGaTTGCAGGCCAAATTGCAAGTTTGTTTCCACTGGGCGAGATACAGCTTGTGTCAAGGTTCTTGGGGATATTGAACCCGGAGAAGAGATCTCCTGTTATTATGGAGATGGCTTCTTTGGGGAAAATAATGAACTATGTGAATGTTACACATGTGAAAGACGAGGTGCTGGTGCTTTCAAATCGAAGACTGGACAGCCTACACCCACTCCAATTATCAACAGCATGTAtggcctgagagagacagacaaacgtCTCAATCGGCTGAAGAAACTAGAAGACAGCAAATGCTCTGGCAGTCAGTTGGAAGGCTCTAATATTGATCCAGACTCTCAGGAAAATCATGACACACATCCATCAGTAGGGAGGACAGCCCGCTCTAGTGTGACAAGGCTCAGTGACTCACAAGCTCTAAGCAGGCAAACTCTGTCCAAAATGCCTATCCCTACCTCATCGTTCAATCAAAGACACTCAAAGAACTCCAACGTGCCAAAGAGGCTAAAATCAAAGTCCATAAAGCCTTTGCTCAAGTTAGGAAGAAGGTGTCAGGTAACTGCCCACAAGTGCCCCATTGAGGTGGAAGCTATGGGTTTGTGCCTTAAAGACCCCACAGAATTTGTCAATAACAGGGTCTcacaaaagagagagatggataagaAAGGGCCCGTGCAAGTGGTGGGAACAAGGGGAGATCTTGAGCACTATACTGCGAAGGAAAACCATCAGAAATCAGTGAAAGATGTTAATAGGTGCCCTGATGGTTTAGCATGCACTCACAGAACTCGCAGTTCAACCAGAGCATCAGTTGGCACACAGGAGTCTGACAACATTACACTTGAACCAAACTTGCCACCCATCCACTGCGGTGTGGTTAGTAAGACCAAGCCTATGGACCTTGGAGATTGTGTCACAGACAGTCACTGGATGAACAGCTCAAGCCTGGATATCAGCTGTCCAAAGACTGAGAACTGTCACAGATATAAGCAAATGATAAAGCAGGAAGGGCACTCTTTCCGACCAGCATCCCTTCTCAAGGAGGAGGTTTCAGACCTGCACCATACAGCCTGCACCACAGACATAGCTGATGGCAGGAAAGAGCTGCAAGGCCTGCCTGATGGTCATGAGCCCTACAACCTGTCTAAGGGAGACAAGCTTCTCCACCTTGGCAAGGGGAAGAAGAAACAGCAGATTACGCGCTATGATTCCCAGCTGATCCTAGCCAACAACAACTCAGGTGTCCCCAAGTTGACCCTGAGGAGACGAagggacagcagcagcagcaggattgAGCCTGGTGATGCAGACCCTGTCAAGTCCTCCAGCGCCACAAAGACCAGCATGAAATTTGTTAAGGACCATCATGCAAAGACCAAGAGGAGTTCTTATGCAGCCAGACTGAGTAATGGGACTTTCAGTCCTGTGGACCACATCCGCTCCTCCAAACATGGCCTCAGTCCTGTGGACCACATCCGCTCCTCCAAACATGACCTCAGTCCTGTGGACCACATCCACTCCTCCAAACATGGCCTCAGTCCTGTGGACCACATCCGCTCCTCCAAACATGTCCTCAGTCCTGTGGACCACATCcgctcctccaaacatggcgTCAGTTCTGTGGATCACATCCGCTCCTCCAAACATGGCCTCAGTCCTGTGGACCACATCCGCTCCTCCAAACATGGCCTCAGTCCTGTGGACCACATCCGCTCTTCCAAACATGGCCTCAGTCCTGTGGACCACATCTGCTCCTCCAAACTGCATATTCAGCTGCAGCGTGAGCAGGACTGCAGGAGGCTCAGCCAGTATCACCATGGTACTGGGCCCTTCACGGGTATAGTAGAGAGGGAAGCAGGGGAGGTCTTTGGGCCGACTGTAGCAACATTTGGGATGCATGATGACACAGAGGAAGACTCGTCCTCCTCTGAAGAAGAGGATGAAGACGACGTCTCTGACTCTGACCATGAAGAGTTTGACGATTTCATTCCACTTCCACCAACAAAACGCCTCCGCCTCATTGTTGGTAAAGATTCTATAGATATTGATATTGCATCAAGGAGACTTGAAAATCAGTCACGCACAGTCAATGCATGAGCTTTATGGATCTTTATTTGACTAGTTGATttaagtcaacaaaacaaaaaaatcccaTGCTGTTGTAAAATGTTAACTATTTTTGTACATGATGGAACTTGATTTGTTATTCATATAGTAGAATGTGTATATTTTACATAGCATATGTGTAAGCCTTTATTTTTATATCTTCAGCTTTATTTTGTACAATTGTTAATTATATTTAAAGCCTTTTCTTGTTTGTGGGGTAAACATGCTAAATTTTGCTTCACTGACATTCACAAGAATGGAACCTTTTGGGAACACACTTGATGTGCTTTTGTCCGCATGGCAGTGTATACATGCATATAAAataatgtgttttatatattGTTTTGAGAGTTTGAAAGGAACAGAATTGTTTCTTGCTGGAAGTCTGTGAAAATGTGTTTGACTTCCAGTGATTCCTGGGAGCTGGTCTGTGACATTTTTGCCCCATTTTTAATAATTCCTTCATTAATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33613 lncRNA downstream 335 28833670 ~ 28834943 (-) True G29376
TU33614 lncRNA downstream 1513 28833569 ~ 28833765 (-) False G29376
TU33637 lncRNA downstream 3787 28831269 ~ 28831491 (-) True G29395
TU33622 lncRNA downstream 68298 28765648 ~ 28766980 (-) True G29380
TU33623 lncRNA downstream 69735 28764298 ~ 28765543 (-) True G29381
TU33651 lncRNA upstream 20337 28862257 ~ 28862761 (-) True G29409
TU33663 lncRNA upstream 31652 28873572 ~ 28874071 (-) True G29421
TU33676 lncRNA upstream 39022 28880942 ~ 28881152 (-) True G29434
TU33851 lncRNA upstream 55956 28897876 ~ 28898094 (-) True G29603
TU33855 lncRNA upstream 63543 28905463 ~ 28906336 (-) True G29607
XM_021597987.2 mRNA downstream 4331 28794166 ~ 28830947 (-) True LOC110520584
XM_021597978.2 mRNA downstream 4332 28794166 ~ 28830946 (-) False LOC110520584
XM_036975199.1 mRNA downstream 97970 28669810 ~ 28737308 (-) True hydin
XM_021597913.2 mRNA downstream 97977 28663539 ~ 28737301 (-) False hydin
LOC110532163 mRNA upstream 21061 28862981 ~ 28882631 (-) True LOC110532163
XR_005041213.1 mRNA upstream 530013 29371933 ~ 29380725 (-) True LOC118946030
XM_021598179.2 mRNA upstream 821028 29662948 ~ 29670318 (-) False nr2f2
XM_021598185.2 mRNA upstream 823160 29665080 ~ 29670314 (-) False nr2f2
XM_021598193.2 mRNA upstream 823160 29665080 ~ 29672991 (-) True nr2f2
TU33578 other downstream 130922 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 768973 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 772828 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1192158 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3553260 25281604 ~ 25282018 (-) True G25117
TU34164 other upstream 438356 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2289973 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2584203 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3142851 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4265199 33107119 ~ 33108497 (-) True G35075

Expression Profile