RNA id: XM_021598179.2


Basic Information

Item Value
RNA id XM_021598179.2
length 4385
RNA type mRNA
GC content 0.41
exon number 3
gene id nr2f2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 29662948 ~ 29672991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGAGAGCTCAGTGAGCTGATCAGAGAGAAAGCATTCTGCCAGCCAAGCTCCTACTATTCGCAATCACTTCCTAACCTCACCCTTTTTAACATATTTGATCACTTTTGATTCTCTGTTATTTTTCTTATTATTTTTCCGTGCATGAAGGAGGTTCTATAGGTTGTGATCTTTTTGTTGTATTATCACTTGCTTGTCGGAGAGTTGACTTCATATTTGACTAAAGCATTGGCTTCAGCTGCTCGCACCACCTCACAAGAAGAAAAGGGAGAAGCAGCAATATTTGTTTTACCAGTTGATGATTTTCATCAAGACTTGAGCTGGAACTTGATAGCGCTCTGCTGCTAGTGTGTAGCCTACATCAATTGTGTGTTTTATGCTGCTGTCACGTCGCCTACGTTCAACGTACTGCTCCGTTTATTGAATAGGCTACCTCATTTCATTATCGCAATCATTTGCTATTTTTTCCCCCTTGAAAGATATCCTGGATGGCTGACTGCAAGCGCCCCTGGACTTGGCCTCTAAGTGCAAGGCTGCGATTCAGCTCGCCATCACATCAGTTTTAAAACGTGTGCTTCGCATCGTCTACAACAGCAATATAATTTGACATTTTCGAAGATTCAACGAACAATCGACAACAGTAGGCTTTTagcatttttgtttttgtttttttactattAATTTTGATTACAGCGTGCTGCATTCTTTTGAGAAAACAAGCACCGCGAAACCAAAAACGGCAGACAAAAAGTTTCCTTACGTTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGTCTGAGACCCAAGGTACCCTTTCTTCGCAATCTCAAGGAGGACTATCCCTTCCGACCCCTCAGATGAATCTGTCAGGCTCTCAGGTCGCCCCTCCGACCCCTCAGACAACCGTCCAAGGACCCCCGAACAACACTGTACAGTCTACGCCGACAAACCAGACGATGCAGTCGGAGAAACAGCAGCCACAGCACATAGAATGCGTTGTTTGCGGGGATAAATCTAGTGGTAAACACTATGGCCAGTTTACTTGCGAGGGGTGCAAAAGCTTCTTCAAACGGAGCGTACGAAGGAACCTCAGTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGTCTGAAAGTTGGCATGAGACGGGAAGTTTCTCTTTTTACTGCAGCGGTGCAACGGGGACGGATGCCACCCACACAGCCACACCATGGTCAGTTCGCCTTGACAAATGGGGACCCACTGCACTGCCATTCCTACTTATCCGGATATATATCTCTACTGCTACGAGCGGAGCCCTACCCAACGTCCCGGTATGGCAGTCAATGCATGCAACCCAACAACATCATGGGCATCGAGAACATATGTGAACTGGCGGCCAGGATGCTGTTCAGTGCCGTGGAGTGGGCCAGGAATATCCCCTTCTTTCCAGACCTTCAGATTACTGACCAGGTGGCTCTTCTGCGGTTGACCTGGAGTGAGTTATTTGTGCTCAACGCCGCACAGTGCTCCATGCCTCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGCCTACACGCCTCCCCCATGTCTGCGGACAGAGTGGTTGCCTTTATGGACCACATTAGGATCTTCCAAGAACAAGTGGAAAAGCTGAAAGTTTTGCACGTTGACTCTGCTGAATACAGCTGCTTGAAGGCAATTGTGCTCTTCACTTCAGacGCTTGTGGCCTCTCAGATGTGGCCCATGTGGAAAGTTTGCAAGAGAAGTCCCAGTGTGCCCTGGAGGAATATGTTCGGAGCCAGTATCCCAACCAGCCAACACGATTTGGGAAGTTGTTACTTCGCTTGCCTTCACTGCGCACAGTGTCTTCATCGGTCATAGAGCAATTGTTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCAGGGATATGTTGCTTTCGGGGAGCAGTTTTAACTGGCCTTACATGTCAATTCAGTAAGCAGAAGGAATGAACAAAGGGGTTAAGAATGGTTAGTGCTTCTTTTGTAGAAGGAAAACGGCTGTTACAAGAGCTTGCTTTCACAAAGAAAGACATTGTCATAAATGACTGTGAATTTAAAAAATTGAGACATTCATCgaactttcaaaatgcagataAAAGCTCCCCGTGTCATTCGGAATAAGTTGCTTCTTATCCAttttttaagaaaaataaataaaacgaaAACAAAAATAAGGAAAATGATTTTGGTAATCCTCAAATCGAAAATGAAACTATAAAGTGCATTTAAAATGAGTATTTGGAAAAACTTAGGAGAAAAGAAAAAGTAAGTTTTCTTTTTCCAAATTAGCCTACTTGTCCTGTGTCCATGTATCTAGCTATTTTTTGTACTTTTATTTTGTTCCTCCTTTCTGGTTCCAAACCGGCCTATGTGATTCTGTAGTACAGATGGTGTTCTTTTCTAAAACCATGACTTCTTTTGAAACAGTTAAGTAATGTAAAATGTTCTTCAAGAATTAAAACTAAATCCACAGCAATATAGGAAAGGCTTATAACTACATGCTTAATGCTGCAAACGCACTTACTCTTAGGATGACCCACACTAAACTGGGCAAGGGAGTTTCTTTTGGTGTTCAAGTTCAACTTTCTGATCCAGCTAAATCATTTCTCTTTCCAATTGAGaatatagcctatagcctaggCTACGTGATGTTCCAGGGTTGCCCTGTTTTGCCATTGCTAAGTTGAGCCATTCGAACCACATCAGCTCTTAATATAGAACAAGGATTCTACAAGGCACTGTCGACAGTAAAACAGCTATTACAGAACAGTGAATTAAATAGCCTGCATACTGGCAACCTATGTTTAATGAACCCCTTTCTGGCTGTATTCAACTTTGTGTGTCCCCTCATGCACCCAGTTCGAAATGTTTGGCATTCATTTGCAGACAGTTCAACAAAATTATTAAAGCCTTGAGATATGGGCTACTGAAGGATGAGTGTGGCTTGTAAACGtagatgcacagctattttaattGTTATGTTCATTTAGATATGGTATTAACTACCAATCCATTGAACATTGTGTCTTGCAATGTATAGGCCGAAACATCAATCAAAACATCTAGTCATACAATATCTTATTTTGAAATTGGAAAGGTCAAGGGTCATATACCTTTTATGTAGGCCTACAGCTGGAATAGTGTTTAATAGCAGTATTATTACGATATCCCTGAAATGTCACCCTCTCTACACTTCAAGCATTAAGTGCCTGAAAAGTAATTTCTTATCAAAACGTTGTTTAAGTATACAACTTTGGGAACACTATTAGATTTGAAACTTCAGTCTTATGCTCATGTATTTCACCTGAAAAACATTAATTAGAGGCAGTATTGTTGTAAATATAGGTCAATTCATTTCAAAGAGTTTTCCTTTATACAAAGTATATGTGATTAAGAAAAACTGTGGTTGCCATTTTTTCGGTAATACAACGTCTTCAATTGAGTGACAGATTTAGCTAGTAGCACTGAAAGTTATGTTTGTAATGTATATACATATTACGACAAAAATGTTTTCTTTTTCATGTATTTAGACTGTGAATGCATGGCCACAGGTCGCTAACCTATTTTATCTTTGATATatataaatgtaaatgtttttgacTGTATAGATATAATCTGTGCATTCAGTACACTAGCCCTTGTATTTAAAAAAGAAACAAAACGTTCAACAATAGGCTAAGACTAAACAGGGTGAGCTGGTTTGGAAAGGAGTAGCTATTTTGACTTAGTGTTCTGCTCCTTTGGTCTGTGACAgatgccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagctagcaATTTTGTCCTTGTTTTTGGGGCTTTTCTTCAACACACAAGACACCATGTTGTGGTTGGACATAAAGGGATCATATTATGTAGTTGATTGAACAGTGCTCTTTGGCTGTTCCCATGCCACATATGGACCAGAGAATGATACATGATTGTAATTATGAACAGTTTAAACTGACCCacgtttttatataaatatataaaaatatatgacTGCAGGGTATTGATAACGTATAGATACTTTTTTTATGATGATTATGATTATTAATTGCAAGtgatatatgtgagtgtgtgtggaagTTTATAGTTGAACAcaattcttgtttgtttgtgttagcTTATTGTAAACAAGCATTCTGCTGTAAATTTGTTCTTGGTATTAAATTATAATTTATGAATTGGAAAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34786 lncRNA downstream 14346 29648401 ~ 29648602 (-) True G30514
TU34783 lncRNA downstream 16244 29646204 ~ 29646704 (-) True G30511
TU34772 lncRNA downstream 22186 29640456 ~ 29640762 (-) True G30501
TU34747 lncRNA downstream 58800 29603947 ~ 29604148 (-) True G30476
TU34735 lncRNA downstream 72769 29589786 ~ 29590179 (-) True G30464
TU34797 lncRNA upstream 1863 29672181 ~ 29672394 (-) True G30525
TU34798 lncRNA upstream 2148 29672466 ~ 29672687 (-) True G30526
TU34800 lncRNA upstream 4323 29674641 ~ 29674871 (-) True G30528
TU34803 lncRNA upstream 6822 29677140 ~ 29677779 (-) True G30531
TU34805 lncRNA upstream 10099 29680417 ~ 29680685 (-) True G30533
XR_005041213.1 mRNA downstream 282223 29371933 ~ 29380725 (-) True LOC118946030
LOC110532163 mRNA downstream 780317 28862981 ~ 28882631 (-) True LOC110532163
XM_036975282.1 mRNA downstream 820298 28835278 ~ 28842650 (-) True LOC110520608
XM_021598040.2 mRNA downstream 820983 28835278 ~ 28841965 (-) False LOC110520608
XM_021598024.2 mRNA downstream 821028 28835278 ~ 28841920 (-) False LOC110520608
XR_005051428.1 mRNA upstream 607937 30278255 ~ 30284238 (-) True LOC118964375
XM_021598271.2 mRNA upstream 633301 30303619 ~ 30336405 (-) False chd2
XM_021598247.2 mRNA upstream 633301 30303619 ~ 30336406 (-) False chd2
XM_021598280.2 mRNA upstream 633301 30303619 ~ 30336406 (-) False chd2
XM_021598298.2 mRNA upstream 633301 30303619 ~ 30336406 (-) False chd2
TU34164 other downstream 382248 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 958592 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 1596643 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 1600498 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 2019828 27636088 ~ 27643120 (-) True LOC110520292
TU37184 other upstream 1461575 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 1755805 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 2314453 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 3436801 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 3772050 33442368 ~ 33452413 (-) True G35299

Expression Profile