RNA id: XM_021598342.2


Basic Information

Item Value
RNA id XM_021598342.2
length 2529
RNA type mRNA
GC content 0.48
exon number 9
gene id plin1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 30517419 ~ 30549437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAACCACTTGGGAGATTCTGGATTTTGGGTAGACTTCTCCTTTAAGTGGGCGTGATGAGCAGGCTTTTTCCCCAGGTTGTGTCTGTATAGTTCTTCTGTTCCTCACCAAATTAAATGTGCCACGGTCTTCAGCGGGACTCAACACTAGACGGCCTAGTTGATAAGTCATAATGGCTCCAGAGAAAACAGCATCCACCAAAGCCCAGGAAAAGGACAATGTGTTTGTCAGACTCCTAAGCCTACCTGCAGTGAGCTCTACCTATGAGGTTATTGAGAGGACCTACACTAGCACCAAGCAGACCCACCCGCTCCTCTGctctgtgtgtggggtgtatGAGAGGGGGGCCAGGACTGCCAGCAGTCTGGCAGTGTGGAGCATCCAGCCTGCCATCGACCGACTGGAGACCCAGCTTGTTGCTGCCAACAATCTGGCCTGTAAAGGGCTGGATCATCTGGAGGAAAAGATCCCAGCTCTGCAGTATCCCCCTGAGAAGCTGGCGTCTGGCATAGTGgatgcagtcacatctacagtGCAGACAGCTAAGGAGGGCATCGCCAGCCCCATCGCTGGCACCTCAGACAGGGTGGTCAGCATGGCATCCAGTTGGCTCCAGTTGACCAGGAGTGCCTTCAGTGATGGCTTTAGCTACGTCCTGAACAGCAAGCCTGTCCACCTTGCAGGGGAGGGAGCAGACACTGCACTGACCCTGGCTGAGAGTCTGGTCAACTATGTTCTGCCTGGATCCTCTGAGGAGAATGAGTCTGCTGCTTTGTGGGAGCAGGAGTCAGGTGTCAGTGCTCCTGGCCTTCCGCCCAGCTACAGGAGGCTTGGGGCTCTGGCCAGCACAGTGTGTCGACGTGCCTACAATCAGACAACCGCAACGCTCCAACACGCCAAGAGTCAAGGTCAGGACCTGGTCACACACATCTCCGGTGTGTCTCCACTGACTGAATATGCCATGAAGAACCTTGAGGCTGTGGAAACAGTGGGCCTGTTCTTTCAGAGCTCATTGATGGGATTCTTCAGttgggaggagcagagagacaaAGCGACAGAAGCAGAGTTTCAGAAGAGTGGTGGTGGGCTGCAGCGCCTGGTGAGTGGCCTTGGTTATCAACTGCAGATTAACTACATGTCAGTTGTGTCCAGTGTGAAGAGTGCCCCTCAGACCACCTTTGGCTTGGCTAAGAACGGGCTGGGTGCCCTGTTGGAGACCGTGGGCAGCGCCCGGGATCGTGTGGTGAACAGCATCTCCTATTATGTTATGATTCCAGGGTTATACTCCTACAAGGATTCTGAGCCTGGCTGCAGTGCTGTGgatgaggagaacagtgagcccAAGATCTCTGATGAGGCCCGGCTCCTCAAGCAAAGGGTCATGCTGCAGATCCCCCAACAGCAGAGGATGATACTGGGCCAGTCCTACACCTCTACCGTCACCCAGCGCATCCCACGGAGAGGAGAGATCGCCATGAGGTCCCGAAACTCCTCGTATACACACAATGTGCATTCCCGCAGCTACAGCCCCACTGCTAAATACGTTGTCACTGTGGAGCCCATTCAGAAGGATACAACTGAAATGGATGACTAACAGTGTCAACTAGAAGCAATTTAATATAAGCTTGCAACAATGCTGTGATTCAACTATTGCAACAGTATTTGTAGAGCTTTATGCAGTAACAGCAAGTGCAATCATGTATGTCGAAGGTCTACGAATGTAATACTTGTGTGTTTCTTTGTGATATGGCCAAAGCTTTGCTTGAAAGAAGGCCTCCTATTCTGTTGACAAATGCATAGCTAATAGACAAAGCAATGTCTGAAACAATGATTTATATATGCAGTAGATGGCTATTAGGAGGGGGCGTGTTGAAGCCACCGCACCTCCATCTTGGCAAAGATATTTTGGAAGttatagaaatgtatttgttaATGTCGACATAAATGTCTGCCGCGTTCAGTCTATTTCAGACAGCTTAAAGCATACTTTAACAATATGTCAGCTGAACATTAAAATGGCAAAACGTTTTCCATAAAGTATAATTTTGAGATTACGAATCATATTGTCCCCACTACAACagaaaatacttaaatacatgtcattCTGTCCTTTAAACATTTCATTGAAGTAGATGTAGAATTCCattaattcctatggaggactgatGGCTTCAAAGCATCACAATGGcaaatacatagcatcagcaatccagggtttaaaTAAATGATTGGCCAGAAACAATGTAAATATGTCTGTGCTCAATAGCTTTGCCTATAACATAGCTGAATCATTAAGAACAGACAGATCAATGAAGTGACGCTGATCCTGTCCACATcgagctctgtctctctgtcattaGAGGGATTCATAAATTGGATTTGAGAAGAAACTCTAGGTACCATCTTTCCTTCTTACTGCCTGTCATGGGAAAATGTTGAACAAAAGACTGTCTTGAAGAAATAACCCACATTCTATCACGATGAGGGACATGCATGACGTTAAACCATTAAAAATATTCTTAAATGACA

Function

GO: NA

KEGG:

id description
K08768 PLIN1; perilipin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35840 lncRNA downstream 22225 30488272 ~ 30495194 (-) True G31513
TU35692 lncRNA downstream 102727 30414081 ~ 30414692 (-) True slco3a1
TU35797 lncRNA downstream 106331 30410880 ~ 30411088 (-) True G31474
TU35795 lncRNA downstream 109119 30408094 ~ 30408300 (-) True G31472
TU35693 lncRNA downstream 112817 30403301 ~ 30404602 (-) True G31374
TU35873 lncRNA upstream 131 30549568 ~ 30549776 (-) True G31546
TU36033 lncRNA upstream 140691 30690128 ~ 30690404 (-) True G31702
TU36052 lncRNA upstream 153526 30702963 ~ 30703324 (-) True G31721
TU36065 lncRNA upstream 158869 30708306 ~ 30708528 (-) True G31734
TU36502 lncRNA upstream 417304 30966741 ~ 30967315 (-) True G32161
XM_021598330.2 mRNA downstream 56076 30414081 ~ 30461343 (-) False slco3a1
NM_001124240.1 mRNA downstream 116773 30373276 ~ 30400646 (-) True st8sia2
XR_002473027.2 mRNA downstream 164771 30346755 ~ 30352648 (-) False LOC110520865
XR_002473028.2 mRNA downstream 164771 30346755 ~ 30352648 (-) True LOC110520865
XM_021598290.2 mRNA downstream 181013 30305371 ~ 30336406 (-) False chd2
XM_021598368.2 mRNA upstream 164401 30713838 ~ 30774808 (-) False LOC110520931
XM_021598357.2 mRNA upstream 164401 30713838 ~ 30981725 (-) True LOC110520931
XM_021598371.2 mRNA upstream 581714 31131151 ~ 31132900 (-) False LOC110520932
LOC110521048 mRNA upstream 877961 31427398 ~ 31444964 (-) False LOC110521048
XM_021598509.2 mRNA upstream 911832 31461269 ~ 31547769 (-) False LOC110521059
TU34164 other downstream 1236719 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 1813063 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 2451114 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 2454969 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 2874299 27636088 ~ 27643120 (-) True LOC110520292
TU37184 other upstream 582456 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 876686 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 1435334 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 2557682 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 2892931 33442368 ~ 33452413 (-) True G35299

Expression Profile