RNA id: XM_021598371.2


Basic Information

Item Value
RNA id XM_021598371.2
length 1585
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110520932
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31131151 ~ 31132900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCTTAACAAGAGAGAGCCTTAGCCTGCTACTTATAGAGAGCCTCAGATATTGCTTATAAAAACTTTACTATTACAATAATTATCTATTATCTATCTCACAAGCCTGTCTGTACGGACACAGTGTTGGATTTGCTCACATCTCATTCACAAAAGTTTCCAAGCCCTGTCAGAGAACTAATGTGGGTGGTGGAGAAGATCCGTGTGTCCACGGAGAGACCCAACCTGCCTCTCCCCTCAACAGAATACAGCTTCAGGATCGGAGACATGTTTGGAGAGAAAGTTAACAAACACAAGAGACTTTCCCTGTGTCCTAACGTCATCACCCCAGACACTATACCAAAGTTCTGCATCCCTCCTAAGATCCCTCCCTTACAGGAGGCGAAAGGTAAAGAGCAGAGCCACCAGGCCCCCACCATCAGAGTGTCACTGTTTGAGCGGGAGAGGGGGATCCCTAAGAGGGAGGCCCCAGCACGAGAGCTCATCAACCCACACATCATCCAGGTGGAGAGTGTGGACGAGAGCCCCTATGACTGTAATGATGAGGAGACCACCAACGCAGACCCTCAGAGCCAGGCAGCCCTCTCCCTGCCCCACATGGCCAAAGCCCAGACCTGCTACGGCTTCTGTACCCTGCTGGAGAGCCCCCACACCAGGAGGAAGGAGTCCCTGTTCCACAATGACCCTGGGTCCTGTGGCACACCGCTGCTGCTCCCTAGGAGCAGGTCCAACACCGTCCTgtcatcctccccttcctccttcagTCTCCACACCCTGACCTCCAGACTGTCCCCCAGAGGTTATACCCTCAACAGACAGGGCACAGTGGACAGCGACACCACCTCGTCAGCTGAGTCATCACCTTTCAGCTCCCCAATGCTGAGCAGGTCCCCACCCAAGTCTTCCCTCTTCAAAACACTGAGTCAtgaaaggcttctctccagaaACATCAGAAAGACTGTGGTGTCCAGAAACAACTCCCTGTCGACAGACGAGGGCAGCTCCACGGACAATAGCCCCAACGTCATAAGGAGGGCGTCAGAGGGGCTGGTAGAGGGCCTTCCACCAAGCTTCGGTCTGGCTCCTCCTACCATCTTCCCCACAGACTTGGTTCTGCACAAGGAAAGGGTGATGAGGGAGAGCTTGATCCCAATAGGGAAGGATGGCCTCCTGCGTCTCTCTGCAGAATACTGTCCTGATAACCAGAGGCTGCGGGTGCGGCTCATCAGTGCTGAGGGGCTGTATACTCGTTCGGTGGACCCCAAGAGTATAAACTGCAGTTTCAGCCTCTCCCTGGTGCCTGGAAAGGTCCAAAAGCAGCGTAGCACAGTCATCAGGAAGTGTCATAACCCCATATTCAATGAGGACTTTTTCTTTGATGCCATCTCAGATCTCGGCCAACGCTCCCTGAGATTTAAAGTTGTCAATAAAATGTCCACTATGAAAAGAGACTATATTCTGGGGGATGTTGAACTTCCACTAACAAGCATTATCACTTTATAAGTTAAATTATTTGTATTCATTATTGacttgaaatgtatttatttatattttatttagtgAGTAGAGATTTTATTAAACCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36641 lncRNA downstream 43156 31087694 ~ 31087995 (-) True G32298
TU36550 lncRNA downstream 106009 31024799 ~ 31025142 (-) True G32209
TU36529 lncRNA downstream 120048 31010702 ~ 31011103 (-) True G32188
TU36502 lncRNA downstream 163836 30966741 ~ 30967315 (-) True G32161
TU36065 lncRNA downstream 422623 30708306 ~ 30708528 (-) True G31734
TU37264 lncRNA upstream 85204 31218104 ~ 31219774 (-) True G32875
TU37352 lncRNA upstream 211351 31344251 ~ 31344452 (-) True G32952
TU37404 lncRNA upstream 293223 31426123 ~ 31444949 (-) False LOC110521048
TU37432 lncRNA upstream 424966 31557866 ~ 31559782 (-) True G33025
TU37428 lncRNA upstream 429816 31562716 ~ 31563263 (-) True G33021
XM_021598357.2 mRNA downstream 149426 30713838 ~ 30981725 (-) True LOC110520931
XM_021598368.2 mRNA downstream 356343 30713838 ~ 30774808 (-) False LOC110520931
XM_021598341.2 mRNA downstream 581714 30517419 ~ 30549437 (-) False plin1
XM_021598342.2 mRNA downstream 581714 30517419 ~ 30549437 (-) True plin1
XM_021598330.2 mRNA downstream 669808 30414081 ~ 30461343 (-) False slco3a1
LOC110521048 mRNA upstream 294498 31427398 ~ 31444964 (-) False LOC110521048
XM_021598509.2 mRNA upstream 328369 31461269 ~ 31547769 (-) False LOC110521059
XM_021598498.2 mRNA upstream 328369 31461269 ~ 31547770 (-) False LOC110521059
XM_021598486.2 mRNA upstream 328369 31461269 ~ 31549288 (-) False LOC110521059
XM_021598492.2 mRNA upstream 328369 31461269 ~ 31549288 (-) False LOC110521059
TU34164 other downstream 1850451 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 2426795 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 3064846 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 3068701 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 3488031 27636088 ~ 27643120 (-) True LOC110520292
TU37405 other upstream 293223 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 851871 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 1974219 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 2309468 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 2734658 33867558 ~ 33868045 (-) True G35628

Expression Profile