RNA id: XM_021598504.2


Basic Information

Item Value
RNA id XM_021598504.2
length 5031
RNA type mRNA
GC content 0.52
exon number 30
gene id LOC110521059
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31461269 ~ 31549288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATCATACACTTCCGGCAAAATGCTATGTAGATTATAACTGTCAATGGTGTCTTATGTCGTTTCCGTCAACACATAAAACACATCAATTTAGCTAATTTTCTAAGAAGTTTAGCTTTTACCCTGAGAATTGAATTACGTAAATGTCAAAAGACAGTCGCAACGATGGACGACGGCGTGGCCAGCACCGATTCGGTATTAGAATTGGACAAGGCGGGGACGGGAGGGAGAGGTCTGGCAGCAACAGCTCAGGGTCCTCGCATGGAGGAGGAAAAAGCAGGAATACTCCAATAACCGTTGCCTTGAAGGCATCCTTTCGGCGGTCAAACAGCCATGACAAGGTGAGGAAGATTGTGGCAGAAGAGGGCCGTGCTGCGAGAAATCTCATTGCCTGGAGTGTTCCTCTGGAGAACAAAGAGGAGGAAGGGAAGTCCAAGACTCATACAAACGCCAATTTGAGGAATCAGAGAATTAACTCTGGACTGCATAGGAATAAGAAACAGaatacaggcctggacaacaagAGCACAGCCGGGGCCTTGCTTGACAAGGGAGCAGAGAAGAGTCCCACCAAAGCCAGGCAGCCGCGCAAGGTGGACCTGCGAGCACGATACTGGGCCTTCCTCTTCGACAACCTGCGGCGGGCAGTGGATGAGATCTATGTCACCTGTGAATCTGATCAGAGTGTGGTGGAGTGTAAGGAGGTGCTGATGATGTTGGACAACTATGTGCGGGACTTTAAAGCTCTGATTGACTGGATCCAGCTGCAGGAGAAGTTGGAGAAAACAGATGCCCAGAACAGACCCACGTCTTTGGCTTGGGAAGTGCGTAAGATGTCCCCAGGTCGTCATGTGATGCCCAGCCCCTCATCTGACAGGATTGTCCACTCACCTAGTGCTCGCCGCGCCCTAAACTTTGGTGGTCCTCCACCCACACTGGCCGTAGCTCGTCTGTCCCACACGGGCCCCAGCTGGGCTGACCGGGTCAAGTCCTCCCAGTCCCTTCCTGTCCCCAGCCAAGTCAACAACTATCCCGCAGAGAAACCAGGTAAGAAGGACTCTGAGGGCTGGGAGACAGTACAGCGTGGGCGTCCGGCACGGCCTCGCTCTGCCGCCATCGTAGCGAAGGTCAGCCCGGTGCTGGCCCACATCAGCCCTAAAGATGATATCAATAAGGAGAACCAGCAGCCCCCTGGCAGGCCCTGCCCCCTGGACAAAGACGAGGCTCAGTGTGAACAACCAATCCCTGAGGAGCCCGACCCCCTGGAGGAGATGACAGGAGACTTAGAGAAGGGTCACATGATGGAGCCCCAGTCCATGGCAGAGGTCCTGGCAAAGAAGGAGGAGCTGGCTGACCGCCTGGAGAAGGCCAACGAGGAGGCTATCGCCAGCGCCATTGCTGAAGAGGAACAGCTGACCAGAGAGATCCAGGCTGAGAACAATGACCTGGAGACTGACAATGAGACTGACTTCTCTGCCAGCATTGGCAGTGGAGGTGGATTCAACATGGATTGGAGTGACATGCTAGCCGACTATGACGACTCGCCTCTCTCTGCAGCGCGGGAGCCGTGGCGTCAGAGCACCTCCTGGGGGGACATCGTGGAGGAGGAGCCTTCCAGACCACCTGGCCATGGGATCCACATGCACGAGAAACTGTCCTCCCCATCTCGCAAAAGAACCATCGCAGAGTCTAAGAAAAAACATGAAGAGAAGCAGCTGAAGGCCCAGCAGCTCCGGGATAAACTGCGAGATGAGAAGACTCACAAACTGCAGAAGCTCCTGGAGAGGGAGAAGGAGGTCAGGAAATGGAAGGAGGAGTTGTTGGACCAGCGGCGGAGGATGATGGAGGAGAAGTTACTCCATGCAGAGTTCAAGCGGGAGCTGCAGCTCCAGGCCATAGTGAAGAAGGCTCAGGAGGAggaggccaagGTGAATGAGATAGCATTCATCAACACTCTGGAAGCTCAGAACAAGAGGCACGATGTGCTGGCCAAGCTGAACGAGTACGAGCAGCGCCTCAACGAGCtgcaggaggagagaggcaggagacaggaggagaagcAGGCCAGAGACGAGGCTGTACAGgagCGTAAGCGGGCTCTGGAGGCAGAGCGGCAGGCACGGGTGGAGGAGCTGCTGATGAGGAGGAAGGAGCAGGAGACACGCATCGAGCAGCAgaagcaggagaaagagagggccAGGGAAGACGCTGCACGAGAGAGGGCCAGagacagagaggagcgtCTGGCTGCCCTCAGCGCTGCTCAACAGGAGGCCATGGAGGAACTGCAGAAGAAGATCCAGATGAAGCATGATGAGAGCAGTCGCAGGCACATGGAGCAGATTGAACAGAGGAAGGAGAAGGCAGCAGAACTCAGCAGTGGCAGACATGCCAACACTGACTATGCCCCCAAACTGACACCGTATGAGCGCAAGAAACAGTGCTCCTTGTGCAATGTTGTGATCACCACGGAGGTGCACCTGTACAGCCACACCAAGGGCAAGAGGCACCAGCAGGCCGTGAGAGACAGCAGCAGCATCCAGGGACGCGAGCTCTCAGACGAGGAAGTGGAGCATCTTTCCTTAAAGAAGTACATAGTGGACATTGTGACGGACAACACTGTCTCCTCTGAGAGTgtgaaggatggagaggagaggcagaaggCACGCAAGAAGGCAAAGAAACTCCGCACACGCATGAACTCCAGGGCAAAGGAGTATGAGACGTCAATGGAGGCAAAGACAGTCCCCGACTCCCCATACAAGGCCAAgcTCCAGCGTCTGGTGAAGGACTTGGTCAAGCAGCTCCAGGGCCAAGACAGTGGTCAGTGGGCCAACACCAGGGTGTCAGGCCTGGACAGAACCCTGGGAGAGATCTCCCGCATCCTGGAGAAACAGAACAATGAAGATCAAGTGGCATTCCAGGTGGGAGGGGGACTTTCTACTCTGGAACAGATTCTGCAGGTAGTCACTGCAACCTCCACCCCCACCGCAGTCTCACGCATTCCAATCAAgtCTCTATGTGCTGCGATAAACACCTACTATCTGGCATGCTCTCGTTGCCACCTCAACTGCACATATGTTATCTTCAGCAACAAGATAGCCTTCCTCATGGACCTGCTGCTACATCAGCTTACACTGTTCGTCCCAGATGAAGACAAGACCATATTTGGTCGCAGTGTGAACAAGCAGGTGTTTGAGGGACTGACCACCGGCCTGCTGCAGACCAGCGCCACTGTCCTGAGCCTTCTCCGTCCCTATGTCCCTGACTGTGGCCGCGGGGACGCCCCTCGCATCATGTCACCAGACACCAAGACCTCCCCTATAGAGCCCTTCAACACCCGCGCCCAGGACCTCATCAGCTATGTGGTAAACATGGGTCTGATTGATAAGCTGTACAGCTGCTTCCTGTCTGTCCAGGGCCCAGTGGACGAGAGCCCCAAGATGTCTGCCTTCCTCCAGCAGGCCACCGCTCTGCTGCACGCCATGTGTAAGCTGTGCTTCGCTGTGACCGGCCGCTCTCCCAGTATATTTGACAACAAGCGTACAGACCCCACAGGGCTGACGGCCCTGCTGCAGTCCACAGACCTGGTGGGTGTGGTACACACTCTGTACTGCATCCTGCTCCACAGCTCCGCCCTGCCTGAGCCGGCTGCCCAGGGCCCACAGGAGCCCTATGCCCCAGGGGTCATCCAGGTGGCCCTAACGGGCCTCCGCTTCCTCAACAGCTTCGCCCTGCTCGACCTGTCTGCcttccagACTGTTCTAGGTGCCGAGGGCCTGTCCCTTGCTTTCCGTCACATAGTGAGCTCCCTGCTGTGGTACTGCTCTCAGCACTCCTCTGAAGAGCTGCTGCAGGAAGTCATCATCTGTGTGGGCTACTTCACCGTCAACCACCCTGACAACCAGGTGATAGTGCAGTCTGGCCGCCAGCCCAGCGTGCTGCAGAAACTGTGTCAGCTACCCTTCCAGTACTTCAGCCACCCGCGCCTCATCAAAGTGCTCTTCCCTTCACTCATCTCAGCCTGCTACAACAATCCCCAGAACAAGGTTATCCTGCAGCAGGAGATGAGCTGTGTGCTACTGGCCACCTtcatacagGACGGTGCCTCAAGTGAGAACCATCCAGACAACAGAATGCAACAAGGAGACAGAGTCTCTCAGCCACTGGATTACTGTGAGCTGTCCGACCGCTTTCCCAGAGACCAATGGGAATCAGCACTGCAGTTCTTCCTCAAAAAGCAGGAGGACTAATCCAGAATTGCATGCCGACCTCTAACACGCACATATACATAAAAAACACTACAAAGTAGAAACCGACACTTAACCCTCCATTCTACACTACATACTTTCCCATTTAGATTTGAAGTCTGCATATGGgcttattctttaaaaaatgcaGTCTTAGCCTTCCCAAAACTCTTGAAATCCTAGAAGACGAGGGATAAATCCTAACTTGAGATGCACATGTATAACTAAAATGTTTGTGTAAGTCATCCATCGATGTCCATGGGCGATTTGCACGAAAGTTTGAGTTGGAAGTGAGTATCTTGTGTATTTTACCGTGAGTCACGCACAATAATTATGTTCCTTGTCCAACCAAGTAATTTGCTTTCGTGTTGTGTTTCTATTGTGGATAGAATGACAACGTAGCAGAAGAGAGCAGAGATCATCAAAAGCACTCTCATAATGGTTAGATTACATAACATGTTCATCAATAATACTGTGTACTTCCTGTTAATTCCTTTTAATATTTTCATATACAGTTAAGATGTGAATGACCTGATCAGAATGTTTTTTTCCCTGTAGTTATTTTACAGGCGTTGGGCAGTTTTGTACTTCAATATGTAAGTTGCATAGTCTATATATGTTTATTCTGTACATTTTAGATTTGCTCTAGTAGGAGCTGTCCTGATTTCAAGTACAAATGTTTCCCTTGTTCTTGCCTTTATGCTGTGAAGAACTTACAAAATATAATTGATTTAGtaaattacatttttatcccatttaataaattatttattaTTAGGCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24869 SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37404 lncRNA downstream 16320 31426123 ~ 31444949 (-) False LOC110521048
TU37352 lncRNA downstream 116817 31344251 ~ 31344452 (-) True G32952
TU37264 lncRNA downstream 241495 31218104 ~ 31219774 (-) True G32875
TU36641 lncRNA downstream 373274 31087694 ~ 31087995 (-) True G32298
TU36550 lncRNA downstream 436127 31024799 ~ 31025142 (-) True G32209
TU37432 lncRNA upstream 8578 31557866 ~ 31559782 (-) True G33025
TU37428 lncRNA upstream 13428 31562716 ~ 31563263 (-) True G33021
TU37430 lncRNA upstream 29156 31578444 ~ 31600483 (-) True G33023
TU37514 lncRNA upstream 62654 31611942 ~ 31613064 (-) True G33104
TU37520 lncRNA upstream 67833 31617121 ~ 31682005 (-) True G33109
LOC110521048 mRNA downstream 16305 31427398 ~ 31444964 (-) False LOC110521048
XM_021598371.2 mRNA downstream 328369 31131151 ~ 31132900 (-) False LOC110520932
XM_021598357.2 mRNA downstream 479544 30713838 ~ 30981725 (-) True LOC110520931
XM_021598368.2 mRNA downstream 686461 30713838 ~ 30774808 (-) False LOC110520931
XM_021598342.2 mRNA downstream 911832 30517419 ~ 30549437 (-) True plin1
XM_021598569.2 mRNA upstream 17086 31566374 ~ 31582313 (-) False tspan3a
XM_021598577.2 mRNA upstream 17086 31566374 ~ 31582313 (-) False tspan3a
XM_021598551.2 mRNA upstream 17086 31566374 ~ 31582329 (-) False tspan3a
XM_021598560.2 mRNA upstream 17086 31566374 ~ 31582335 (-) True tspan3a
XM_021598585.2 mRNA upstream 52100 31601388 ~ 31609175 (-) False LOC110521155
TU37405 other downstream 16320 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 328378 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 2180569 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 2756913 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 3394964 28057443 ~ 28066305 (-) True G28870
TU37804 other upstream 435483 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 1557831 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1893080 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 2318270 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 2728412 34277700 ~ 34362736 (-) True G36141

Expression Profile