RNA id: XM_021598560.2


Basic Information

Item Value
RNA id XM_021598560.2
length 1887
RNA type mRNA
GC content 0.43
exon number 7
gene id tspan3a
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31566374 ~ 31582335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCATATGTTTGTATTATGATACAAACACTGCTAGCACAGATAGAACAACGAGTTAGTTATAAAAAATATTTGCTGCTAAAATGAGTTGAGGTTGCAACATCGGGTCACATGACCTCCAACTGGTTGGTTTTTGTGGTGCTGGCGCTCCGGTGTATGGGAGTCAGAGAATCTACTCCAGTCGGGCATGGATTACAAAGCCAGCCATTTTGCAAATACGTTTTTACCATAATAATAGACAATACCTGTTTTAAACATGGGGCAGTGTGGTATCACATCATCAAAGACGGTGCTGGTTTTTCTGAACTTAATTTTTTGGGACGAAAGCCACTGCCTGCCCTGCAGTCTACCCCTTTGAACCTTTTAAAATGCTACTTCTCATACAATACTAGCCTGGTAGCCACCAGACAGTGCACCACTATcaaacagGCAGCAGCAGGGATTTTGTGCTATGTTGGAGCCTACGTGTTCATCACGTATGATGACTACGACCACTTCTTTGAAGATGTGTACACCCTTATCCCTGCTGTGACCATAATTGCAGTAGGAGGCCTCCTTTTCATCATCGGTCTTATTGGATGTTGTGCCACAATACGAGAAAGCCGCTATGGGCTTGCAGCGTTTGTCGTCCTTCTCCTGCTGGTGTTTGTGACGGAAGTGCTTGTGGTGGTTTTTGGTTATATTTACAGGTCAAAGGTTGAAGATGAGGTCAATCACTCCATCCAGAAGGTGTACAATGAGTACAATGGCACCAACACAGATGCTCCGAGCCGTGCCATTGACTACGTGCAAAGACAGCTCCACTGTTGTGGGATTCACAATTACTCCGACTGGAGGAACACGCGCTGGTTTAATGAGTCTCGAAACAACAGTATACCAGTGAGCTGCTGCAAACCTAACGCCAGAAACTGTACAGGCTCTCTAGCCCATCCTGGAGACCTCTATCCAGAGGTATTTGGGATGCTGTGTGCCTTTGTTGTGCTGTGCCGGAGGAGCCGTGACCCTGCCTATGAACTTCTCATGACGGGGGGAACCTACGCATAAGAAGGACCCTACactctcacaccacacacacctagGCTCGTGGCTTTGTCAGTGGAGAGTGGTTCACTGGCTTGCCCAAGTTCAGGTATCTACTGTAAGCTGAAAAGCTCCTCACAGTGGCTCATACTCCACAATGGTGAAGTGGTGAAAAACCTATTTATTTACATGCTATGTAAGTTGATGTTTTGTTTTAGGTGTCTTATTAAAAACGCTACAAGCCAAATTCTAAAATGGCTATTTAAAcacgttttttgtttgtttaatttgTTGCTCTGACTACTTACCCCTTTGTTGTTTGAGGTAGACAAGGATGTGAATGATGGACCTACTGTATGGAATATGTGGACTGAATACTTTCCTCATGTCTGTTTGCACTGTGTATGGCCTTGGAATATTTTATAACTATTTAAATCTATCATGTAAATAACTGAGTTGAAGATTCCCTTGTATGAGGTTGCCTTGTGCTACTGCTTTGTTTGTGTCCAGATCTCACCCTTCACCAGCACCATTCTGTTTCTGATAAGCAGTAGAACTATAGACCGTAGATTAATTACAGGCACTGGATCGACCCACCAGGAATGAGCAGTAACCAAAGTGCAGTCAATTAACTGATTTGCTTTGTAAGAATGTGGGCATTTGATTCAGTGCATAAAACAGGCTTATTTAGGAATAATCCACATGTACTGTTACTGAGCTTTTGTTGTACTTTGTGTGGAGTTGAGCACACTATGTAGGCCTAGTTTTCAAATAGATTTTAGCCATGTACAGAAACGTAAACCAGAGATGAATGTAAATAGAATGGGGTAAAACTAACAAGGAAATAAACGGTATATTCCATCCAGAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37428 lncRNA downstream 3111 31562716 ~ 31563263 (-) True G33021
TU37432 lncRNA downstream 6592 31557866 ~ 31559782 (-) True G33025
TU37404 lncRNA downstream 121425 31426123 ~ 31444949 (-) False LOC110521048
TU37352 lncRNA downstream 221922 31344251 ~ 31344452 (-) True G32952
TU37264 lncRNA downstream 346600 31218104 ~ 31219774 (-) True G32875
TU37514 lncRNA upstream 29607 31611942 ~ 31613064 (-) True G33104
TU37520 lncRNA upstream 34786 31617121 ~ 31682005 (-) True G33109
TU37624 lncRNA upstream 194830 31777165 ~ 31782159 (-) True G33212
TU37659 lncRNA upstream 265356 31847691 ~ 31847899 (-) True G33246
TU37665 lncRNA upstream 269002 31851337 ~ 31851612 (-) True G33252
XM_021598486.2 mRNA downstream 17086 31461269 ~ 31549288 (-) False LOC110521059
XM_021598492.2 mRNA downstream 17086 31461269 ~ 31549288 (-) False LOC110521059
XM_021598504.2 mRNA downstream 17086 31461269 ~ 31549288 (-) True LOC110521059
XM_021598498.2 mRNA downstream 18604 31461269 ~ 31547770 (-) False LOC110521059
XM_021598509.2 mRNA downstream 18605 31461269 ~ 31547769 (-) False LOC110521059
XM_021598585.2 mRNA upstream 19053 31601388 ~ 31609175 (-) False LOC110521155
XM_021598593.2 mRNA upstream 19053 31601388 ~ 31609175 (-) False LOC110521155
XM_036975648.1 mRNA upstream 19053 31601388 ~ 31609175 (-) False LOC110521155
XM_036975652.1 mRNA upstream 19053 31601388 ~ 31609175 (-) True LOC110521155
XM_021598634.2 mRNA upstream 31841 31614176 ~ 31637844 (-) False LOC110521169
TU37405 other downstream 121425 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 433483 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 2285674 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 2862018 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 3500069 28057443 ~ 28066305 (-) True G28870
TU37804 other upstream 402436 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 1524784 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1860033 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 2285223 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 2695365 34277700 ~ 34362736 (-) True G36141

Expression Profile