RNA id: XM_021598585.2


Basic Information

Item Value
RNA id XM_021598585.2
length 6188
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110521155
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31601388 ~ 31609175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGATTAAGGTTCAGGTTAAGGTTAAAGTATGGACTtgccaaggatcccggatagcagCACTGATCCTAGAGGAATTGCGTCAGGAAGCTGGCGATGCGCCATAAAATCGCTAGGTAGAGAGCTCAGAAAAAAATGTTATTCTGAGCAATTAGCTAGCTGTAAGGAATGGTACAAGAGGGGGACTGTAGAATCTCCATATCAAATTTACTGAAGCAGTTTGCATTGATAGCTTCCAACATTGCATCGATTTGTGATTTATCAATCTATTCACTTCAGACTCGCGAGATGACATATGTGTTTAGCTCTCGCGAGTTAGCAAGCAATAAGCtagaagctagctagctgttttGTTGCAAATTAAGAAGTCCACCCGAAATAATGAGGCCTGTGAATCGGATGAATTATGGCTGCAACGCGTTAACTAATCGTCAAATGGAGCAGCCCATCATGACACCAACTGACAACCCTGCAGAATTTTAGCAACAAACATAATTGAGAGCCAAATGGTGTTTGTAAGCTTTCAAACATGGGTGACATGAAGACCCCTGATTTTGATGATCTTTTGGCTGCCTTTGACATCCCTGATGCCACCAGTTTGGATGCTAAAGAGCCCGTCCAGGAGAGTCATGATGAGGCAGAAGGTCAGCTGAAGCAGACAGAGATGTGTATGGAGGACAGTGTATCTGTTCACCAAGCTGTGGGTGCATCTGATGTTCCTGCTGTCAGTGTTATAGTGAAGAACACAAGTCACCAGGAGTCGCCTGATAGTGGTGGAGAGGGCCCACATTTCAATTACCCATTGCAAAATGGGTTCAGGGGGTCAGGGGCCTCCATGGACTCTCATCAGATAAGCCACTGTGGTTCTAAGTCTTTTGTGTGTGCTTTGAAGGGGGATGGCTCAAGAGGACTCTTAGGGATGACCCCCGTCCAGCAAAAACCTGAAGGAACACCTTCCTTCTCTCAGTCCTTTTCCCAGTTTAGCCCCATCTCTAGTCCAGAATCTGAAGACACCCCAAGCAACGGGGTTGATGTCCATCCAAAACAAGAGAGACCCTACTTCCCTGCTGCCTCTATATTTATGTCTGCAGAACCCCCAATGTCAGACAATCAGAAAAAACAGCTGTCTTACAGCATGTTTGACCAGTGCCATAAAGTAGACTGTGAAGAACTTGAGAACCTTCCAAGGTGCAAAGGAGAATCTATCAAAGCAAAGGATACCAGAACAGAGGTGAAGCCTGACAGTAATGCCAGTGACCAGAAGGACAAGGGAGATTGTCATAGTGCAGTGCTCCCTGCAAGTGATCATAACATTATTGAGTCAAGCAGTAACAATATAGTGGCAACGTCTAAGATGCCCACCTCTCATCCATGTGTCAAAACTCCAACATCCAAACTATCGTCTTGCCTTGAGGCATTAGTGGCTCTGAATGCCAGAAATTATCCCAGTGAACCACCAAACTCTGGAGACTTATCAGTGGCTCATGACGGCACCATGAATGTTAGTCCAAAAATGCCCATGTCACCACAAAGTCCCCGGAGTTCCCCTGAAGCTGTGAAGCGATTAATGAATCCACCTGACAGTCCTGTAAGCATTTGCAGTGATAGCAGTGGCAAAGGATCCCCAGCACTGGCATCTGGCTCACCCCCAGCCATACCGAGGGTCAGAATAAAGACCATTAAAACTACGACTGGGCAAATCCAGCGCATGGTTACCAGTGTAGTCCCTGATTCAGAAAATGAGGAGGTCCTGTCTGTTGAGTCCTCCCCATCCCAGAGAATTATTGTTGAGGCCTACTCTAGTTTGTCTCCCTATCCCTCTCATAATGTGATAAGCGATATCATTGTTGATATGCCCATCAAAAGTACACCAGTTGGTATTCTGCCATCAAAGGTTACTGATGACAAATTAAAGGGGAACTCCAAGAGGCCAAGACCAATGCAGTCCCCAACCATTTTTCATAATACAAGTAGTCCGGTTATGAGACCTATGCCGGTTGCCCAGCACGGGCCTTCTACACAAAAGAGGATTTCATCAGTTCAAACAGGCAACTCACCCAATGCAAGCTTCCTTCCTAAGGCAATGCACTTAGCTAACCTGAACCTAGTCCCTCACAGTGTTGCTGCATCAGTTGCAGCACGCTCCACCTCCCATCAACAGAGCCAACAACATGCACTTTCCTCCTCTATGGTGTGCAGCACTGTCCCATTGGTGCATCAAGTAAAAAAAGCTGCCCCTAATCCATGTGCTGCCATTCCTAGTACAGCAGCAGGTACTTTAAACAGACTGTTAAACAATGCGAACCCTGTACCCACATTCGTACCCAACCTGAACCCACCACCTGAGAGCAACATCCACTTGCCACCACGCGGATATTGCTGTCTTGAATGTGGGGACTCCTTTGGGGTAGAAAGGAGTCTCGCCTATCATTATGGCAGGAGGAGTGTGCACATTGAAGTAGCCTGCACCCACTGTGCTAAGACCATGGTATTCTTCAACAAGTGTGCCCTGCTGGCACATGCACGGGAACATAAGAACAAAGGTGTGGTGATGCAGTGCACACAGCTCTCCATGAAGCCCATAGCAGAGGGACAGATGTTTGTACCTTTGCTCGCTGAATCCTCTATGCATGTGGGCTCCCATGTGCCCCCATTATCCTCACCTAAAACCCAACCAGTCATGCCCCTCTATGCAGACAAAGTCATCCGCCACAGACTCTGCTGCCTGGAGTGTAACAAGCAGCTATCAGATTACAGAGGTCTCGCAGGCCATTACCAGAGGCTGTCGGAAGAAATGGAGGGACTGATGTGTAAGGTGTGCCCGATGCTGCTACCAAACAAGTGCAGCTTCCGGGCTCACCAGCGTATTCATGCCCACAAGTCTCCTTACTGCTGCCCTGAGTGTGGTGCGCTGAGTCGCTCTGTGGACATACAGAAGCATGTGAAGGAGAACTGTCTTCACTATGCACGCAAGGCTGGCTATAAGTGTCTTCACTGTGATATGGTTTTCATGTCATTTAATGTGCAGAAGAGTCACATTGAGGAGAAACACTGTGAGGTCTTCTATAAGTGCACTATCTGTCCTGTTGCCTTCAAGTCTTCTGATGGATGTCAAATGCATTTGACAACTAAGCACAACGCCAGTGTAGTGTCTCCTCAGTTAATCTTCAAGTGTTCTTGTGATACAGTGTTCAAGAAAAAGCAGTTATTGCTTCAGCACTTCCGTCAAAACGCCAAAAAGCTTATAACCTGTGTGTTCAAGTGCCCTGAGTGCACTTCAATCTTCACCCACAAGCAGTCGTTAATGCAGCATTTTAAGGGGGTGCATGAAGGAATCTTCAAAGAGGTGGAGAAAAGCACAAAGCCAAAAGAGATGTCTGCACAGCACCAAGATGTTACCTCTGCATTCCACCAGCCAAAGGTAAACACTCCCATTGAACACTCTGATGCAACCAGAAAGAGGGCCAACTTGGCCGCTCGGGACAGGAAGACCAATCTGAAAAATGCTGGTTGGACCTGTGGAGAGTGCCTACACTGGCTGCCTGACCGAGAAGTCTACGTCTCTCACATGAAGAACAACCACGGGAGGTCACTGAAGAGGTATCCATGCCGGCAGTGTGAGAGGTCTTTCAATTCCTCTACAAGTTTGAGAAGACACATTCGCAATGACCACAATGGAAAGAAAACCTTTACCTGCTGGTATTGCACAGATGAGAGGACAACATTCACCACAAACATCATGCTGAAGAACCACATCAGTTTGATGCATGGGATCAAAAATCCAGACTTTAGTCTGTCAAAATCAACCCCTCTAGATACCAGCAAAGCCTTGGGAGAGAGGCTTGTTTCAAAGAGACCTGCTGTGGCATcccagagggagggggaggatggTGCTGCCCTAGAAGGCTCCGCTTACAAACGTCTGAAATCTCACTTTCGCTGCGCTAAGTGTGGTTTCACCTCAGAGGATGGCACACAGTTCCAGCAGCACATACCTCAGCATAAAACCGATAAAAATTCTCCCCAATGTCTGCACTGTGGATTATGTTTTGCATCTCAGCTGTCTCTCAACAGACACCTGTTTATTGTGCACAAAGTCAAAGACCCCGAGGAAGAGAAGAAGGAAATGATAGACGTGGAGTATGAGAGCAGAAAGAAGCAGAAAGAGGACATGGGGAAAACAGTGGGTGTGAATGAGGGAGAGGACTTGCCACCTCCATTAGTTAAATCTGACCCTTCACGGGAAGAGGATCCAACCAGGTTGCACTTTGAGACTGCAGTAAGACCATTGACCTTTAAATCCACATACAGCACTGACCTAGAGATTCATGGATAATCTTCAGGCATAATAGAATCAATAAGAGCAATGTTGAACTTCTTAAAAGCTGCTATCTCCATTTCTTTGGTAAATAGTAGTCACGCTTTTCTTTTTTGTCTTAAAACAAAATTATTTTTATGTTTCTCAAGCCCTTGGGACTGGCAGATGTTCCACATCAACTGAAAATATACAATTCATCTTGGGTAATTTTGGGCAAAGATTAtcatgaattatttactttaattTGACCTTTTGAAGCTTGCATGTGTTGTATTAAGTGTCTTTAAGAGCCTCTGGTACATAACCACACCCACCTGTTAAGGCACACTGTTTGGTTCAACAGTATTCTCTAGTGACTCCAGTTACTCTGACAAGCGACTCAGGAACGTCAAGGAGCTGTCCCTCAGGCTAACCTCCCATTAAATTTGATATAATAAAAGCCTATAGACTTTGCTTTAGTCTATAGCAGGCATATATGTTTGGTTTCCTACTTAAGTACATTATAATAGATGGTGCTTCAGGCAGGTTTTGACGCAATACTGTTACATACTGTCAGTATCAACTTCtatcatactgtatgtgtatgttgaAATATTTACTCTGACCTAGGTATCACTTAGCACAGAATATATATTTGATATCAATTCCATACCACATGGTATGTGATATGGAATTTATTATAAAATCTGGTTAAACTACCAAAATAGCACTTTTCTACAAGTTAAAATATATGTGTTGGAGTTAGAGGCAATCAGCTACATCAATTTTTGGACCTATACATTTACATGTACCTATTTGATTCTTAAAATATAACATGAGCTTTTTTAAACTGTCATACATTAGTAAATGTAAACCAACATGTACAACATGGTTAAAGAtatataattttgatatcatgaatgatcagtccttgcatccagagCTATGGCTATAATTTCTAGTGCTTACATTTCTCAAGCCCCATCTGTTTTTTACTGAAATGGGCAGGGATAACGCTTTGTTATTATTTCTTCTGCTGTTTTAAATGCCTTGCTAAAAGATATGACACTTTTTTACTGTACTCTTGCTTTTGTACCCTGATAAAAGTGAGCTTCCATTCATTTAAAATGCTCTTATATCTATGTTTAGAGTAGTGGTGACTTGTCTTAGCGATGCCATTGTTTTTCTTGGTTAATTATGATCTTTGGCGAGTGTTCATTGAATGTGAGAGAGCATCTGTTTTGCAAGATAATGCAGGGTGTTAAATGGCTCATTTCTAACGGTGTACTAAGGCAATTGAAAGAGCAATGATTAAATGTAAAGGGTTATAGCATGTTTGAGTGCATGTGAAATAAGCTGAATATAAAGACCTGTGCAGCTCTTTCTTCCTACCTCCACAGTATAAGGCAGTGATTGTTAAACTTTGGATGTTCTGGGAGATTTCACCTTTGGTCTCACTGCaatgtaaaatgtattattattctcAAAATGTATATTATCTCCCATAATATTCAATTTTATAAATTACTTTGGAGATAGATACTTATAGTCACATTGACTTATTTGTGAACTTTCTATTTAAGTGCTTAATGAACTGTTCATTTTCTAGTGGTTATATGAATCAGTGTTCATGCTTTAAATGGATTCAGTGTTAACTCAGTGGCTGATATGAAACTTCACATCTCAGTGTTTTTATAGCCTGTCAAGAGAAACTTTGTACTTTTGATATGTACAATATTAAGGACTTGTAAGCTAACCCATGTACACAGTAGCTAATTAACATTTTATTAACATTATTTAAGCTATCACATATCTATTCAACCTGCATCGGCCATTGTGCCTTGCTGTAATGTTTACTTCAAATAATTGCAAATAAACATGTACATGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37430 lncRNA downstream 905 31578444 ~ 31600483 (-) True G33023
TU37428 lncRNA downstream 38125 31562716 ~ 31563263 (-) True G33021
TU37432 lncRNA downstream 41606 31557866 ~ 31559782 (-) True G33025
TU37404 lncRNA downstream 156439 31426123 ~ 31444949 (-) False LOC110521048
TU37352 lncRNA downstream 256936 31344251 ~ 31344452 (-) True G32952
TU37514 lncRNA upstream 2767 31611942 ~ 31613064 (-) True G33104
TU37520 lncRNA upstream 7946 31617121 ~ 31682005 (-) True G33109
TU37624 lncRNA upstream 167990 31777165 ~ 31782159 (-) True G33212
TU37659 lncRNA upstream 238516 31847691 ~ 31847899 (-) True G33246
TU37665 lncRNA upstream 242162 31851337 ~ 31851612 (-) True G33252
XM_021598560.2 mRNA downstream 19053 31566374 ~ 31582335 (-) True tspan3a
XM_021598551.2 mRNA downstream 19059 31566374 ~ 31582329 (-) False tspan3a
XM_021598569.2 mRNA downstream 19075 31566374 ~ 31582313 (-) False tspan3a
XM_021598577.2 mRNA downstream 19075 31566374 ~ 31582313 (-) False tspan3a
XM_021598486.2 mRNA downstream 52100 31461269 ~ 31549288 (-) False LOC110521059
XM_021598634.2 mRNA upstream 5001 31614176 ~ 31637844 (-) False LOC110521169
XM_021598613.2 mRNA upstream 5001 31614176 ~ 31638335 (-) False LOC110521169
XM_021598627.2 mRNA upstream 5001 31614176 ~ 31638335 (-) False LOC110521169
XM_021598606.2 mRNA upstream 5001 31614176 ~ 31638698 (-) False LOC110521169
XM_021598620.2 mRNA upstream 5001 31614176 ~ 31638698 (-) True LOC110521169
TU37405 other downstream 156439 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 468497 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 2320688 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 2897032 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 3535083 28057443 ~ 28066305 (-) True G28870
TU37804 other upstream 375596 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 1497944 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1833193 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 2258383 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 2668525 34277700 ~ 34362736 (-) True G36141

Expression Profile