RNA id: XM_021598889.2


Basic Information

Item Value
RNA id XM_021598889.2
length 2016
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110521366
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32218758 ~ 32270230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGCAACAAAACTGCCCTGCCACCTCCACCCAATAGCAACAAGAGACTCCAGGGTTGGGGTGACAAGTTTTCATGTCCTAAATAAGGAGAGCCCATACCGATGCTCCTGTCTCAGCGCTGCCATGACTTCAACTGGGTGATATGGAGACAGAACCCTGCCCTGGAATGCAAGAGAAGCGGGTGGTGGAGACCAATGAGCCAGTGTTGAAGAAGGCCTACACAGTCCCTGGTGACAATGAAAGTCAGGAGGAGAAAGAACTGTTCCATGGGCTTCAGCAGGAAGACAAGGAACCCCATGGGGAGGGAGACCCCAGGATAAACAGCcagggtggagggaaggagggcactACGTTAAACCAGCTCCCTATGTCTGAGATTACAGAGATCCCCTGTGTGGAAGAGAGGAAGCTGAAGACCCCCAGTTTTGTGAAGACAGTGCGGTTCAGTGAGACAGAGTctgtggaggacagagagaactcGGAGGAGGTGCTCTTCCCTGACCATGAGATGGTGCAGTGGACCTCCTCCAGCTTCGAGGAGCTGTTCCTGGCTGAGGACTGGGAGAACATCACAGATGATCGGCTGTTGAGGAAGAAGGTGCTGGTGCCTGGCCCCCAGCAAGCTGAGCACCCAGCCTGGGGTCAGGAGGTCACAGTCAAAATGCAGGGAGTGCTGGAGGACAGGACTGTGGTGGAGAAGGACCCTAAACTGGTGTTCGTCATCGGAGAGGGAGATGTAAACCAGGCCCTGGAGGAGTGTGCCATATCCATGCAGCAGGACGAGATCGCATTACTGCTGGCAGATTCACAGTACACCTATGGACTTCTGGGAAGGGAGACAGATATTCCAGCCTGGGCCCCCTTACTCTACCAGCTGCAGCTCCTGGACATCAGAGAGAAGCCCGACCCTCTGATTCTCCCCATTTCGGACCGTATGCGCATCGGAAACCAGAAACGAGAGCGTGGGAACTTCCACTTCCAGAGGGAGGAGTACAGCATGGCTGCCAGAGCCTACTGGATGGCTCTTGATGTCCTTACTACACATAATAGAGATGGTAGTAGTGATGTGCtgttggagggggaggaggaggaggtgcaggACTACCGGGTGAAGTGTCTGAACAACCTGGCAGCAGCTCAGCTGAAATTGGAGCAGTACGATGACGCACTACACACCAGCCGGGATGTTCTGTCCCTTGATCCACAAAACGTCAAAGCCCTCTTCAGGACAGGAAAGCTTCTGTCAGACAAGAGCGAGTACCAGGAGGCAATGGAGATACTGAAGAAGGCCCTGAAACTGGAGCCGTCCACTAAGGCCATCCATGTTGAGTTGTCCAAGCTAGTGAAAAGGCAATCAGGAGGCAAAGATACCCAGAAGTGGCAAGCCAAACCTGCCCAGCTCCTCGGAGACAATATTGCCCCATTTCTGACTCCTTCTAAAAAGAAGCCACCTGGAATTTCATGGACTTTCCTGCTTGGTGCTCTGGTGGTGGCCTTGGGCAGTTTAGTGACGTCAGTGGTTCTCACTGCAAGAAACTGACATCCTCTACAAAGGAACTGTCCTCTACACAAGTCCAGCTCATGAATACTAAACTGAGTTGTCTACTGTGAATAAAATAAAGATTGCACTGAACAATAAAAACAACATTTGCACCCCAGATTGTGTTTGAATGTAACAGAGTAAACTAATGGCACTTTAATTTTTTTGAACAATGAACACAAAATAGCTTTGTGTTGTAATCGTTTAGTACAGTTATTAGCTAATAAATGTCACCAATTCCATAGAAAAATGCCCAAATTCCAAAACTCATTCTGGAATAGTCACATGGTCAATGTTCCTCCACAAAAGATTGAAGAGAGCAGTATTCTCGTGTTACAGCTTTTAAATGTATTGTATGGGGTTTCTGCAATAACAGGTTGTGTCCAAATGAATAATCTATGTCAATGGAAAATCTAATAAAAACACTTGTAGGCTTACTGTCCGTTGATACAGAAACAACATCAATAAAGCTGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38568 lncRNA downstream 1718 32215495 ~ 32217040 (-) True LOC110521435
TU38570 lncRNA downstream 3728 32214752 ~ 32215030 (-) True G34098
TU38567 lncRNA downstream 9335 32209211 ~ 32209423 (-) True G34095
TU38566 lncRNA downstream 9659 32207994 ~ 32209099 (-) True G34094
TU38565 lncRNA downstream 13717 32204528 ~ 32205041 (-) True G34093
TU38607 lncRNA upstream 1822 32272052 ~ 32272266 (-) True G34135
TU38608 lncRNA upstream 3185 32273415 ~ 32273615 (-) True G34136
TU38611 lncRNA upstream 6216 32276446 ~ 32276676 (-) True G34139
TU38649 lncRNA upstream 58481 32328711 ~ 32330486 (-) True LOC110521442
TU38645 lncRNA upstream 61713 32331943 ~ 32333326 (-) False LOC118964447
XM_021598981.2 mRNA downstream 1480 32215503 ~ 32217278 (-) False LOC110521435
XM_036975695.1 mRNA downstream 221096 31989300 ~ 31997662 (-) False LOC110521251
XM_036975701.1 mRNA downstream 221096 31989300 ~ 31997662 (-) True LOC110521251
XM_021598687.2 mRNA downstream 376755 31808912 ~ 31842003 (-) True LOC110521239
LOC110532195 mRNA downstream 424606 31791379 ~ 31794152 (-) True LOC110532195
XM_021598947.2 mRNA upstream 54705 32324935 ~ 32328199 (-) True pex11a
XR_002473145.2 mRNA upstream 58480 32328710 ~ 32330586 (-) False LOC110521442
XR_005051487.1 mRNA upstream 61729 32331959 ~ 32333416 (-) False LOC118964447
XM_021598968.2 mRNA upstream 72619 32342849 ~ 32351133 (-) True LOC110521431
XM_021598845.2 mRNA upstream 96203 32366433 ~ 32378515 (-) False neto2b
TU37804 other downstream 232608 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 773809 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1085867 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 2938058 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3514402 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 836889 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1172138 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1597328 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 2007470 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 2071332 34341562 ~ 34381232 (-) True G36196

Expression Profile