RNA id: TU38649


Basic Information

Item Value
RNA id TU38649
length 1528
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110521442
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32328710 ~ 32330586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCAGTCCTGCAGTCCCCTGCTGAACGCCATTATGACGACCACAGATGAGCAGGatgaagaggaagatgaagatTACAAGTATAATTACTTTTTATAGTGTACAGTCAGTCTACTGCCAAGGGTAGCGCACCGGGTTCCTTTGTGGAACCGGTGGGCAGAAGTCCATCTGAGGCACTGAAACAGGCCTTAAAACTAGGAGGAGGAACTCCTTCCAGATGAGGAAGGACTTAACCTCGAACAAAACAGACTATCACTATGCTATGTGAAGGTACTTGAAGGAATTTCTGAGTGGCTCAGAACATTTCAGGGTTGCTGCTTTGGCTAATGGTTAGGATTGCATAATTTACTATATGAGGATATTATGGTTGTAGATATCTTTTcaataatgtaagatatgtagatGCATCTAACCTCCAAACCCAGGATCTCTCCTGAAATGAAGCCACAAGTCTAAACTCCCATCTTCTGCTGTGTCATGCAAAAACTGCATCACAAACCACTGAAAGGCATAAAAGAGAGCCACTAGGAGACAGGAGGGCAGAGTTCCACCTGAGGTACTGAAGATAAGACAAGATGTCTACCAGGCCTTAAAGGGAGAAGCGGCGCCTaccagatgaggaaggaggactTAAGCCTTGAAACCATGAAGCGAGAAGACTCTCACAATATGAAGGCACTTTATTATGTTAATCATAACATGATACATAATTTCTGTTGTACCTTAAACCaatgaacatactgtatgttcaacTATCACAATGCTATGTGAAGCAATGTGAAGTGTCTCAGAACATTTCAGGGTAGCTGCTTGCCCAAAATGGTCAGGATTGCATAATTTCCTATATGAGGATATTATAGTGGTATACCTTTTCAATAATGTAAACCATGCATCTAACTGATAAATGAGGAAATAGGACTTAAGCCTTCTATACTTCAAGTGAGAAGACACTCACAATGTGAAAGCATACAGTTACAGGGTATAAATAATATAATAGTATGTTTATTATCGAACCATGTTTACTTGTGCTGTTAttaccgatgtgaaatggctagctagttagcggggtgcgcgctaatagcgtttcaatcgtaacgtcacttgctctgagaccttgaagtagttgttccccttgctcggcttttgtggagcgatgtgtAACTATGATTCAAGGGTGACTGTAGTCTATGTGTGCAGGGGGTCCCTGATTCGAGCCCAGGTAAGGGCaaagagagggacggaagctatatgGACTATGTTCAACTATAACTATAAGGATTTCTGTCGCTTGGTTTTGTGGCTAAAGGGAACATTTGAGGGTAGTTGTTCAGGATAAAATGGTTATGATTGCCTATATTTTCATAATGTATTATGAACATAATTTAGGGTGATTACACATGTTCATTATTAATGTATATGTAGATACAACTAACTATCAAAGCCAACATCTCCCTTCACTTGGAGCCACATGTTGAATGTCCCTTCTTGTGTTTTACTTGTTTTGAAATAAATGTTTTCTTTCATTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38611 lncRNA downstream 52035 32276446 ~ 32276676 (-) True G34139
TU38608 lncRNA downstream 55096 32273415 ~ 32273615 (-) True G34136
TU38607 lncRNA downstream 56445 32272052 ~ 32272266 (-) True G34135
TU38568 lncRNA downstream 111671 32215495 ~ 32217040 (-) True LOC110521435
TU38570 lncRNA downstream 113681 32214752 ~ 32215030 (-) True G34098
TU38645 lncRNA upstream 1457 32331943 ~ 32333326 (-) False LOC118964447
TU38646 lncRNA upstream 1457 32331943 ~ 32333326 (-) False LOC118964447
TU38647 lncRNA upstream 1457 32331943 ~ 32333326 (-) True LOC118964447
TU38695 lncRNA upstream 114439 32444925 ~ 32446401 (-) True G34210
TU38733 lncRNA upstream 146648 32477134 ~ 32477355 (-) True G34242
XM_021598947.2 mRNA downstream 512 32324935 ~ 32328199 (-) True pex11a
XM_021598889.2 mRNA downstream 58481 32218758 ~ 32270230 (-) True LOC110521366
XM_021598898.2 mRNA downstream 59546 32218758 ~ 32269165 (-) False LOC110521366
XM_021598873.2 mRNA downstream 61131 32218758 ~ 32267580 (-) False LOC110521366
XM_021598882.2 mRNA downstream 61131 32218758 ~ 32267580 (-) False LOC110521366
XR_005051487.1 mRNA upstream 1473 32331959 ~ 32333416 (-) False LOC118964447
XM_021598968.2 mRNA upstream 12363 32342849 ~ 32351133 (-) True LOC110521431
XM_021598845.2 mRNA upstream 35947 32366433 ~ 32378515 (-) False neto2b
XM_036975796.1 mRNA upstream 35947 32366433 ~ 32378515 (-) True neto2b
XM_036975856.1 mRNA upstream 71890 32402376 ~ 32411173 (-) True LOC110521335
TU37804 other downstream 342561 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 883762 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1195820 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3048011 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3624355 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 776633 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1111882 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1537072 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1947214 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 2011076 34341562 ~ 34381232 (-) True G36196

Expression Profile