RNA id: TU38647


Basic Information

Item Value
RNA id TU38647
length 550
lncRNA type sense_over
GC content 0.52
exon number 4
gene id LOC118964447
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32331943 ~ 32333416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCGGACATGTCTGCTGAAGGATTCAGGGGGCTGGTGACCATAACCTTTTAACAGGTCACCCATGGAGTCCCATTCTGTCTGCTTGCTATGAATCATtgaggaggaggaggaggaggaggaggagaagaaatcCTGGGCTAGACTAAGGGCGGGTCGCGCCTCCCCCGCGACCGTCCGGTCATGAGAACACTACACATCGGGTGCGGCCTTCACTAGGGAGTAACGCATTCCCATGCCGGGCCAGCAGGGGGTGACGTGTGCAGAGCCAGCGCTGCAGAAATGCAGTGACCTCGAAACAACTAACCAAAACTCAGACTACAGAAGCAAAACCACAAAAGCCAAAACTACTTTCCACTTCCCCTTTTCCCTTTGGCTTCTGGTGGTCTGCGTGCTTGGTTAGGTGGGCTCGAGGGAGGGGCCTGCTGATAAACACAATCCCATAATAGATTCACCTAAAAAGGCTGTACGCAACATTTACTGTAAAAACCaatgaaaatgtgaaaataaaaCTGTAAACACATGCAACTTTAACATGTTTTGTCCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38649 lncRNA downstream 1457 32328711 ~ 32330486 (-) True LOC110521442
TU38611 lncRNA downstream 55267 32276446 ~ 32276676 (-) True G34139
TU38608 lncRNA downstream 58328 32273415 ~ 32273615 (-) True G34136
TU38607 lncRNA downstream 59677 32272052 ~ 32272266 (-) True G34135
TU38568 lncRNA downstream 114903 32215495 ~ 32217040 (-) True LOC110521435
TU38695 lncRNA upstream 111599 32444925 ~ 32446401 (-) True G34210
TU38733 lncRNA upstream 143808 32477134 ~ 32477355 (-) True G34242
TU38739 lncRNA upstream 170002 32503328 ~ 32503549 (-) True G34248
TU38749 lncRNA upstream 183887 32517213 ~ 32517457 (-) True G34257
TU38752 lncRNA upstream 189353 32522679 ~ 32523065 (-) True G34260
XR_002473145.2 mRNA downstream 1357 32328710 ~ 32330586 (-) False LOC110521442
XM_021598947.2 mRNA downstream 3744 32324935 ~ 32328199 (-) True pex11a
XM_021598889.2 mRNA downstream 61713 32218758 ~ 32270230 (-) True LOC110521366
XM_021598898.2 mRNA downstream 62778 32218758 ~ 32269165 (-) False LOC110521366
XM_021598882.2 mRNA downstream 64363 32218758 ~ 32267580 (-) False LOC110521366
XM_021598968.2 mRNA upstream 9523 32342849 ~ 32351133 (-) True LOC110521431
XM_021598845.2 mRNA upstream 33107 32366433 ~ 32378515 (-) False neto2b
XM_036975796.1 mRNA upstream 33107 32366433 ~ 32378515 (-) True neto2b
XM_036975856.1 mRNA upstream 69050 32402376 ~ 32411173 (-) True LOC110521335
XM_036975822.1 mRNA upstream 83371 32416697 ~ 32422418 (-) False pdp2
TU37804 other downstream 345793 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 886994 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1199052 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3051243 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3627587 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 773793 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1109042 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1534232 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1944374 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 2008236 34341562 ~ 34381232 (-) True G36196

Expression Profile