RNA id: XM_021598845.2


Basic Information

Item Value
RNA id XM_021598845.2
length 3169
RNA type mRNA
GC content 0.47
exon number 12
gene id neto2b
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32366433 ~ 32378515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagtatcttTCTCTGAATGGCTGAACCTACAAATTAAACAGAACTTTTAGTTTCATGTTTCTCAAAACAAGGCTATACCCATCTACATAAAGAAGCAATATTTACAGGGACTTCATCACTTCGTGGGATTTTTATTGAACAAGTAGCCAGTTTTGGATAATGATGATTTCCGTTAAGTTTTTTTCCTTATTTGAGATGACAGGGATTCGGAGTCGTTGATCAATTACATTGTATATGTCTATATTTAGAGCTTTTTACAAAAACACGTAGCAGTGTCTTATCCGCGGCGATGTAGTGTAAATTGCATTCTACGAGGAAAGTTGTGGTTTGTAAAAGTCGATTCTAACGTTTTACCCTGAAAAGCGTAAAGGAGGCGGGTATTAAAGGAAGAAAGCAAGGAACGAAGAAAAGCTTTGTAGCCTAGCAAGCCATCCTGTGAGGAAACTGAGCGGAGGAGGAGATGTACATATTCTGGGTAGCTCTCTTTCTGATAGAGGAAGGCTTTGCATTGGCACAGAAAACCAAAGACTCTCAGAATGTGGGTAAGATTTCCCAGAATGCCCGACAGTGTGGCACCTGGATCAGAAACATCAACGGGGGGCAGTTCAGCTCTCCAAACTACCCTAAAATCTACCCTCCCAACAAGGAGTGCCTCTACATACTGGAAGCCCTGCCCCGTCAGAGGATCGAGCTTCTGTTTGATGACATCTTTTACATTGAGCCATCCTTTGAGTGTCGTTTCGACCACATCGAGGTGAGAGATGGTCCGTTCAGTTTCTCTCCTCTGATCAACCGCTTCTGTGGCTCCTCCAGCCCAGGCCTGGTGCTCTCCAGCGGACGATTCATCTGGATCCGCTTCTCCAGTGATGAGGAGCTGGAGGGACTGGGCTTCAGGGTCCAGTACACCTTTACCGCAGACCCAGAGTTTCACCTCCACGTGGGAGGAATATTAAATCCTATTCCAGACTGTCAGTTTGAGCTAAGTGGAGCTGATGGTATGATCCGGTCCGgtcaggtggaggaggaggacaaagTCAAACCTGACCAGGCGGTCGACTGTATCTGGACCATACGAGCTCCGCCCAACTTCAAGATCTACCTGCGGTTTCTGGAGTACCAGCTGGAGAATTCGAACGAGTGTAAGAAGAACTTTGTGGCCGTGTACGACGGCAGCAGTGCCATAGAGGACCTCAAGGCCAAGTTCTGCAGTACCGTGGCCACTGACGTAATGCTTGACAACGGGGTGGGCGTGGTCAGGATGTGGGCCGACGAAGGCAGCAGACTCAGCCGCTTTCGGATGCTCTTCACGTCTTTCGCAGACCcCCCATGTTCAGGCGACATGTTCTTCTGTCACAGTAGCATGTGCATCAACAACTCTCTGGTGTGTAACGGGGTGCAGAACTGTGTCTTTCCCTGGGACGAGAGCAACTGTAAAGagaAGAAGCCAAAAGGTATATTCCATCACATTACTAAGACCCATGGGACAATTATAGGTGTGTCTACAGgactcgtcctcctcctcctcgtcatctCCATACTGGTGCAGGTCAAACAGCCCCGCAAGAAGGTGGTGGCGCGGAAGAGTGCCCTTTTCAATCGAGCGGACTTCAAGGAAGTGTTTGAACCTCCGCACTACGAACTCTTCTCACTCAGAGAGAAGGAGTTGTCTACGGACATAGACCTACCAGAAGAACTCCAATCTCTCAACGCTCTGAGACGTTCCTCCACCACTTCCCGCTGCATCCATGAGCACCACTGTGGCTCCCAGACCTCCGCCAACCCCAGCCGACGTGCTTCCTCTGTGGGCATAGGATCCATGGAGCTCCCCTTCCGGTGCGAGTTCACCCAGGGTCAGCCAGGCTCCCTACCCTCTCTGAGAGGCGTCAACAGCAGCCTGAGGAAGAAGAGCTGGCCTAGTATGAAACAGGTAGGACTGGTGGGAGGCGAGGACCTGGTGGACCGGGTAAGGGGGAGGGAGGATAgggtgatggaagaggaggaagaagaggaggtggaaggaggGAAGTGTGATGTGTATGTACGCAGAGGGATGAGCATGAGATCCATCTGTGAGATGTCTCAGCAGAGATCGATGTCCATGGACTtctgagagagaatgaggagaggaggaaggggacagaAAGGAGGATgtggtggaggaaggagagaacatTTGTGATAGAAAAACAATCAGTATCGCTTGACACATTTACTATGAAGGAAAATAGATTggaccccaacccctaacctaGACACTATCTCTGAAACTCCGACTATCCTGTTGCACTGGATCTACGAGTTAAAGGCATCATCTGTAACTTCGATCACCGTTAAAAAGTACACCCTGACACTTTTCTGAAGGTGACAATCTGGTATGCAAACCACAAGTATGACAACCAAAAACGAAGAGGAACAGGAACACACTGATGTTTTGTTTTAAGTTAATTATGTTTGTATTTCATGTTTTTGCCACAGGGAAAAGAGAATTGATGGAGTGTGTCCTTAACGTCGGCCTCCTTTAACAAATACTGTTCCAAGGCTGGAGACAGGCCTTATAGTGTGAAGTTCTTATTTATTTCATGACATACCTCACTGTGTATTTTTTCCCTAAAGGTTTTTTCTCTCCATTTGTTGATTTTGTATTCATAGTTTTAGAGAGGATAGTTGATGGAGAATTGTGTTTACGGTTAGCACTGGATGATAATGATGAAGGATGCCTtgtatcattgtgttgttgttttgttttgataAATTTTGTTTTGTTATTGAATCTATTAAAGAATGTGGCTCTTGGTGACTGGGGTGAGTTGATGGTGACTGAACCATGTGGCTGTGGTAGATGAGGATCAGAGTGAGTTGGCCATGGTTTCCGTTGAACACTCCAacacccacccctctctctgctgaGACAGCATGGTTTTATGAGGCTTCCTGTAATGGTCTGTCACACCACTACGCAGGCAAGAAAGCCCCTCTTGAAACCCTGACTAACACAACCAAGCAATATACAACCAATAAACAACCAAATGTACAAACAATATACATACTGTAGACAGTGAGcgccaaaagtattgggacagtgacattttttgttgttttggctctgtactccagcactttggatttcaaATGGTACAATGACTGcaaggttaaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38645 lncRNA downstream 33107 32331943 ~ 32333326 (-) False LOC118964447
TU38646 lncRNA downstream 33107 32331943 ~ 32333326 (-) False LOC118964447
TU38647 lncRNA downstream 33107 32331943 ~ 32333326 (-) True LOC118964447
TU38649 lncRNA downstream 35947 32328711 ~ 32330486 (-) True LOC110521442
TU38611 lncRNA downstream 89757 32276446 ~ 32276676 (-) True G34139
TU38695 lncRNA upstream 66410 32444925 ~ 32446401 (-) True G34210
TU38733 lncRNA upstream 98619 32477134 ~ 32477355 (-) True G34242
TU38739 lncRNA upstream 124813 32503328 ~ 32503549 (-) True G34248
TU38749 lncRNA upstream 138698 32517213 ~ 32517457 (-) True G34257
TU38752 lncRNA upstream 144164 32522679 ~ 32523065 (-) True G34260
XM_021598968.2 mRNA downstream 15300 32342849 ~ 32351133 (-) True LOC110521431
XR_005051487.1 mRNA downstream 33017 32331959 ~ 32333416 (-) False LOC118964447
XR_002473145.2 mRNA downstream 35847 32328710 ~ 32330586 (-) False LOC110521442
XM_021598947.2 mRNA downstream 38234 32324935 ~ 32328199 (-) True pex11a
XM_021598889.2 mRNA downstream 96203 32218758 ~ 32270230 (-) True LOC110521366
XM_036975856.1 mRNA upstream 23861 32402376 ~ 32411173 (-) True LOC110521335
XM_036975822.1 mRNA upstream 38182 32416697 ~ 32422418 (-) False pdp2
XM_021598865.2 mRNA upstream 38182 32416697 ~ 32422420 (-) False pdp2
XM_021598857.2 mRNA upstream 38182 32416697 ~ 32422592 (-) False pdp2
XM_036975820.1 mRNA upstream 38182 32416697 ~ 32422592 (-) False pdp2
TU37804 other downstream 380283 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 921484 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1233542 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3085733 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3662077 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 728604 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1063853 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1489043 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1899185 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1963047 34341562 ~ 34381232 (-) True G36196

Expression Profile