RNA id: XM_036975856.1


Basic Information

Item Value
RNA id XM_036975856.1
length 1151
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110521335
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32402376 ~ 32411173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTATCTCTGACGCTCAGTCTTTTTATGTGTTTCAAAATGGCAGAAGCCATGGACTCGGTCAGTTGTTCGATCTGTTTGGAGATACTAAAAGATCCAGTGACTATTCCCTGTGGACACAGCTACTGTATTGGCTGTATTAAAGGCTACTGGGATCAGGAAGATCGGAAGCTTGTCTGCAGCTGTCCCCAGTGCAGACAGACCTTCAACCCAAGGCCTTTTCTGAACAGAAACACAGTTATGGCTGAAATGGTGAAGACACTGACAGAAAAAAATactaaaaagaagaagaagaagaagacaaaactCCAAACTGCTCCTCCTGCTCACTGTTATGCTGGACCTGGAGATGTTGATTGTGACGTCTGCACTGGGACAAAATTAAAAGCTGTCAAGTTctgtctggtgtgtctggccTCTTACTGTGAGACACACCTCCAGCCTCACTATGAATCTCCTGCCTTTAAGAAGCACAAGATGGTCAAGGCCTCCACACAACTCCAGGAGAAGATCTGCTCTCATCATGACAAACTACTGGAGGTTTACTGCCGGACAGATCAGCAATGTATCTGTCATCTGTGTATGTTGGATCAACATAAAGGCCATGATACAGTCTCTGCTGCAGCCGAAATAGCTGAAAAACAAAGGCAGTTGGGGGAGAAATCTAAGCAGAGaatcaaggagagagagaaggagatgctGGAGGTGAGACAGGCTGTGAAGTCATTCAAGCACTCTACACAGGCAGCAGTTGAGAGTAGTGAGAAGATCTTTAATGAACTGATCCGCTCCATTGAGGGAAGGCGCACTGAGGTGAAGGAGCTTATCAGAGCCCAGGAGAAGGCTAATGTGAGTCGGGCTGAAGGACTCCTGAAGCAGCTGGAGCAGGAGGTGGCTgagctgaagaggagagaggctgagctggagcagctttcacacacagaggatcacatCCATTTCCTCCAGGTGACGTCACTGTCCATTGCAGCAGAGCTTCcagtctctctgtgtccctcctgGGTCTGAGACCTTACCCAGCATCACTATCAACCATCACGTCTCCTTTGAGGATGTTATGaactctgtctctgagctgaGAAACCGACTTCAAGATATCTGCGCTGGAGAGATAATTATGTTGTCTGTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38645 lncRNA downstream 69050 32331943 ~ 32333326 (-) False LOC118964447
TU38646 lncRNA downstream 69050 32331943 ~ 32333326 (-) False LOC118964447
TU38647 lncRNA downstream 69050 32331943 ~ 32333326 (-) True LOC118964447
TU38649 lncRNA downstream 71890 32328711 ~ 32330486 (-) True LOC110521442
TU38611 lncRNA downstream 125700 32276446 ~ 32276676 (-) True G34139
TU38695 lncRNA upstream 33752 32444925 ~ 32446401 (-) True G34210
TU38733 lncRNA upstream 65961 32477134 ~ 32477355 (-) True G34242
TU38739 lncRNA upstream 92155 32503328 ~ 32503549 (-) True G34248
TU38749 lncRNA upstream 106040 32517213 ~ 32517457 (-) True G34257
TU38752 lncRNA upstream 111506 32522679 ~ 32523065 (-) True G34260
XM_021598845.2 mRNA downstream 23861 32366433 ~ 32378515 (-) False neto2b
XM_036975796.1 mRNA downstream 23861 32366433 ~ 32378515 (-) True neto2b
XM_021598968.2 mRNA downstream 51243 32342849 ~ 32351133 (-) True LOC110521431
XR_005051487.1 mRNA downstream 68960 32331959 ~ 32333416 (-) False LOC118964447
XR_002473145.2 mRNA downstream 71790 32328710 ~ 32330586 (-) False LOC110521442
XM_036975822.1 mRNA upstream 5524 32416697 ~ 32422418 (-) False pdp2
XM_021598865.2 mRNA upstream 5524 32416697 ~ 32422420 (-) False pdp2
XM_021598857.2 mRNA upstream 5524 32416697 ~ 32422592 (-) False pdp2
XM_036975820.1 mRNA upstream 5524 32416697 ~ 32422592 (-) False pdp2
XM_036975811.1 mRNA upstream 5524 32416697 ~ 32422774 (-) False pdp2
TU37804 other downstream 416226 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 957427 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1269485 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3121676 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3698020 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 695946 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 1031195 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1456385 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1866527 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1930389 34341562 ~ 34381232 (-) True G36196

Expression Profile