RNA id: XM_021598730.2


Basic Information

Item Value
RNA id XM_021598730.2
length 4884
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110521272
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32485245 ~ 32500835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctatttattgttggttaagggcttgtacgtaAGCATTTCGTGGTAAGGTATACCATGcgcctgttgtatttggcgcatgtgatgaataacattttattttatgacAAAGCTTACTGACAGTGAGATCATGTCCAAAAGAGGGGGAGGCAAATTTTAGCGTCATTTCAGCGGCATGCTCCAAACTGGTTGGCTGACTTCAGCTTTTCATCAGTTAGCCTTTATCTCGATTTACATACCCTGTATCTGAATTTCTGAACAGGGAGGGGCAACAGAAACAAATGACTGGAGAAGAAGAAACATTACATAAGCAGCCATCTCGGATACAGTCACAGACGGTGTACTGTTTCATTGCATAACAGTTTTACATTCGAGGAGATATCCATAGACAGACATGATTTAGCTTTCAAATCTCACATCCTGGGACTACGgTTAAACTACTAGCATGGCTGAGTCTGCAGCTTTGATTTCAGATGATGCCCAGTTTGTGGATAAGCATATGGCTGAGCTCATTCAGAGGGTTATCATAGTGATGCCCATAGCAGATGACCTACTCCAGAGGCGCCTGATCCATAAGGAGGTGTACTCTAATATCCATGCTACCAGGACCAGCCAGGGACAAATGAGACTGCTGTATGAGGCCCTGCATTCAGGAGGGGTAAAGGTGAAATCAGCCTTTTACAGGATTCTACTGGAACAACAACCTCAAATAGTCCAAGATCTAGGTGAACCCTCTGCAGTCCATGTCAGCACAACTCTGAATTCTAAAGTCAAAGATGGGAATATTGAAATGTGCCAAACAGAATTGAAATCGTACCTGAAGAGAACATTTGAAAGAATATTTCCAGGAATAGCTACACAAGGACGTCCAACACTCCTAAATaagatctacacagagctctTCATCACAGAGGGTGGAAGTGGTGAGGTTGATAAAGAACATGAGGTGATGAAAATTGAGGCAGTATTAAGGAGACCAGCGACACAAGAGATACCAATCAAATGCAACGACATCTTTAAACCCTTACCTGGACAGGACATGACTATCAGAACTGTGCTCACAAAGGGAGTCGCTGGCATTGGAAAGACCGTCTCAGTGCAGAAATTCATTATGGACTGGGTTGATAGAGAAGCTAATCAGGATATACAGTTCATATTTCCAATTCCTTTtcgggagctgaatttgatgaaGGAAAAGACACTCAGTTTGATTGACCTACTCCATGATTTCTTCAATGTCATCAAAGAATCAGGACTTTCCAACtttaaaaaagtgttgtttatcTTTGATGGGTTAGATGAGTGCCAACTTCCTCTGAATTTCAACAGAAATGAGATCTGCTGTGATGTCAAAAAGTCAATCACAGTGGATGTACTTCTGACAAACCTCATAAAGGGGAATCTGCTTCCTTTTGCTCTTCTCTGGATAACTTCACGACCAGCAGCTACCAATCGGATCCCTCCTGAGTGTGTTGACCAGGTGACTGAGGTACGAGGGTTTAGGGATGAACAGAAGGAGAAATACTTCAAGAAGACAGTCAGTGATGAGAAACTAGCTGAAAGAATCATCGCACATATAAAGTCATCAAGGAGCCTCGACATCATGTGCCACATACCAGTGTTCTGTTGGATCTCAGCCACTGTTCTAGGGAAACTGATGAGTAAAGCAGAAAGTGGAGACTTGCCCAAGACTCTGACACAAATGTTCTTACAGTTTCTGATCTTTCAGATAATACAGACAATGAGGAAGTATCATGAAGACCCTGACACAGATCTCCACTGGGATAAAGAGATCATTCTGAAACTTGGAAAACTGGCCTTTGAACATCTTGAGAAAGGCAACCTGATCTTCTATGAGAAAGATCTGAAAGAGTTTGGCATTGACATCAGACAAGCTTCTTTGTGCTCAGGAGTGTTCACACAGATCTTAAGAGAAGAGTGTATGTACCAGGAAGTGGTCTACAGCTTTGTTCATCTGAGCCTTCAGGAGTTCATTGCTGCTTTGTATGTGTTTCTTTCATTTGAAGACAACAATGAGGATGTTATAACACcccaactaccatcctcctcgaCTGGAATTGTCTTGTATGAAGAAATTCGTCCTGACAACATCTACAAGAGCGCAGTGGATAAGGCCTTAAAGAGTCAGAATGGACACCTGGACCTGTTCCTGCGCTTCCTTCTTGGCCTCTCACTGAAGTCCAACCAGACACTCCTTCGAGGCCTACTGACACAGACAGAAGGGAGCTCACAGAGCAACAAGGGCACAGTCGACTTCATTAAGGACAGGATCAGGAAAAATCCCTCTCCAGAGAGGTGCATCAACCTTTTTCACTGTCTGAATGAGCTGAACGACAATTCTCTGGTGGAGGAAATCCAAATCTACTTGAAGTCAGGAGGTGTTTCGAAGGTTGAACTCTCATATTCTCATTGGTCTGCTCTGGCCTTTGTTATGTTGTCCTCAGACGAGGAGCTGGATGTATTTGAGCTGAATAAATTTGTCAGATCAGACGAAGGCGTTATGAGACTGTTGCCAGTGATCAAAGCCTCTAAAACGGCTCTGATGAATTCTTGCAATATCACTTGGAGATGTTGTGAGAATCTGGCCTTATCTTTCGGATCATGTACCTCAAGTTTGAGAAAGCTGGACCTGAGTCACAATGGCCTGACTGATTCAGGGGTAGAGCTGCTCTGTTTTGGACTGGGCAATCCACTCTGTAAATTGGAAACACTGAAgctgtcaggctgtaaAGTCCAAGAgaaaggctgtgcttctctggcttcagctctgaggtcaaacccgtcgcacctgagagagctggatctgagtTACAATAACCCAGGAGATTCAGGAGTGAAGCAGCTCTCTGCTGCACTGGAGGTTCCAGACTGTAAACTGGAGACACTGAGTCTGATTGAGTGCAGCCTAACTGGGACATGTTGTGATGCCCTGGCCTCAGCTCTGTGCTCAAGCTCTTCAAGTCTGAGAGAGTTGGATCTTAGTCGCAATGACCTGCACAGTATTGGGCTggagctgctctctgctggactgagGAGCACCAATTGTAAACTAGAAACGCTGAGGCTGTCAAACTGTGAAGTCGAAGAgaaaggctgtgcttctctggcttCAGCTCTgtggtcaaacccctcacacctgagggAACTGGACTTGAGCTACAATCATAACCTGCAGGATGCAGGAGTGGCCAATCTTTCTGCTGCACTGGGGAATCCACTTTGTAATCTGGAGTCACTGAGGCTTGAAACCTGTAAAGTCACAGAAGAAGGCTTTTCTTCCCTAGCCTCTGCTCTGAAGTCCAACCCTTCACACCTGAGACAGCTGGACCTGAGCAGCAATAAAGCAGGAGACACCGGAGCAAAGCTGCTCTCTGCTGCACTGGAACATCCAGGTTGTAAACTATTGAAATTGAGGCTGTCATTCTGTAGTGTCCTGGGGAACGGTTGCTGTTCCCTAGtttcagctctgaggtcaaacccctcacacctgagacaGCTGGACCTGAGTAACAATTTCCTAGGAGACTCAGGAGTGAAGTTGCTCTCTGCTTTATTGGAGGACCCACACTGTGAAATCAAGACACTGAGGCTTACAGACTGTTACATTTCAGAGGAAGCATTTGTTTCTCTGGCTTCAGCCCTGATATCAAACCCCTcgcacctgagagagctggacctgaccAGGAATTACGTAGgagattcaggagtgaagctgctctgtGCTGGACTGAAGGATCCATGCTGTAAACTGGAGAAACTGAGCCTGTTTTGTTGTAAACTGAGTTGGGAATGCTGTGAGGCAATGGCAGCAGCTCTCCGCTCAACCTCAagtctgagagagctggacctgagtcaCAATTATCTGGGGAATTCAGGAGTGACAATGCTCTCTGCAGGATTGGGCAATCCTCACTGTAAACTGATGATTCTGAGGCTCTGTAATTGTGGTAtgacagaggaaggctgtgcttctctggccACAGAGCTGAGGTTAAATCCCTCTCACCTGAAATATCTGGACCTGAGTTCCAATTCTCCAGGAGACCCTGGAATGAATCTGCTCTTTGCTGTGCTAGTGGATCCCTGTTGTAAACTGGAGATTTTGATTCTGGATAACTGTCACCTCACTGAGAATTGCTGTGCAGCACTGGCCACTGCTCTCAGCTCAAACACCTGTAGTCTGAAAAGCCTGAACCTGAGTGACAACAACCTATATGATTCAGGAGTACAGCTACTCTCAGCTGGATTGAAGAATACACAGTGTAAACTGGAGACACTGAAGGTAGCAAACTGTAAGTTCAAAGAGGATGGCTGTGTTGCTCTGGCCTCAGCTTTAAGCGCCAACCccttccacctgacagagctcgaTCTGAACCAGAACCGGTATGGGCGTGGAAAAGCCCAGCTCAAAGCATTGCAGAAGGATCCACACTGTAAACTAGAGAAAGTGGGATTGGTCCCAATGTGAAACAGCCATCATCATACAGGACCGAGAAATGAGCCGCATTCTGAAGAGACAGTCAATAAGTGAGGTGGACGTAGTGCTCGACCGTTCTTGAAACCACTGAACTAAAAACACGCTGTGTGTAGACCAAATAGACCAAACGGATGCAGCGTAACATTACAAACAAGTGAGATGAATACATGTTTTGATTATACTTTATCATTTTGAAAACGCTCAACACCTACTTTACAAATGTAATGCATGTGTTTGCAGTGCAGTCCTGATCTTTGAAAAATATATAGGCTATGTATTTTCCGGGATAAATGTGTACATATTTACAAGGTTTTATACACATTGTATAAGGGGATTGATTGTCAATGTTCTATTTAATGTCATAGGAATAAAATACAATGTAAGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38733 lncRNA downstream 7890 32477134 ~ 32477355 (-) True G34242
TU38695 lncRNA downstream 38844 32444925 ~ 32446401 (-) True G34210
TU38645 lncRNA downstream 151919 32331943 ~ 32333326 (-) False LOC118964447
TU38646 lncRNA downstream 151919 32331943 ~ 32333326 (-) False LOC118964447
TU38647 lncRNA downstream 151919 32331943 ~ 32333326 (-) True LOC118964447
TU38739 lncRNA upstream 2496 32503328 ~ 32503549 (-) True G34248
TU38749 lncRNA upstream 16381 32517213 ~ 32517457 (-) True G34257
TU38752 lncRNA upstream 21847 32522679 ~ 32523065 (-) True G34260
TU38803 lncRNA upstream 113662 32614494 ~ 32616115 (-) True G34298
TU38807 lncRNA upstream 115361 32616193 ~ 32616530 (-) True G34300
XM_021598930.2 mRNA downstream 28045 32450847 ~ 32457200 (-) False LOC110521397
XM_036975868.1 mRNA downstream 28045 32450847 ~ 32457200 (-) True LOC110521397
XM_021598936.2 mRNA downstream 28339 32450847 ~ 32456906 (-) False LOC110521397
XR_002473147.2 mRNA downstream 59996 32423864 ~ 32425249 (-) True LOC110521450
XM_036975799.1 mRNA downstream 62339 32416697 ~ 32422906 (-) True pdp2
XM_036975974.1 mRNA upstream 29434 32530266 ~ 32552873 (-) False LOC110532201
XM_036975979.1 mRNA upstream 29434 32530266 ~ 32552873 (-) False LOC110532201
XM_036975983.1 mRNA upstream 29434 32530266 ~ 32552874 (-) False LOC110532201
XM_036975987.1 mRNA upstream 29434 32530266 ~ 32552874 (-) False LOC110532201
XM_036975971.1 mRNA upstream 29434 32530266 ~ 32601513 (-) False LOC110532201
TU37804 other downstream 499095 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 1040296 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1352354 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3204545 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3780889 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 606287 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 941536 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1366726 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1776868 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1840730 34341562 ~ 34381232 (-) True G36196

Expression Profile