RNA id: XM_036975911.1


Basic Information

Item Value
RNA id XM_036975911.1
length 6841
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110532201
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32530266 ~ 32734449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttccttctctcagTCTGTTTGTCAGCCTGGAGCCTGGAATGCTCTGGAACTGAGTGTCACTTTAAAAACAACTAACAGACCaaaaagaaaaagggagagagcgagaaagggagagagcgagcaaggATCAGGCAGTGGGAATGTTTGTGTTTGTCGCAACCAGACTTTGGCTCTCAGGGTTTCTTCAGttacaggacaggagagaggagagagggatagagccaTTGGGGATTTCTCTAGCTGCGTGGGATATTGACACAGGATTGCGGTGACCTCTCTTTTTACGGATGTTGGATCCTTAGAGAGAAGAGCGAGGAAACAAGGCATTTTAGTCTGACCTGTGGATACCTACCTGTCATCTGGTGTACCTGTTTTCTTGTAGATAGCTACTTGTGTGTTTCTATGATGGAAGCAGTACTGCTGGGTCTGGAGGATGTGCTGTTCACACGTCAGGGTCTGCTATGGACCTTCACCTCCTCAGCTCTCAGACATCTCCGCGCACTAcacctcacacacgcacacaggtgtGTCCCCAGGCCACTGTACCAGatGACAGAGGGGCGGCGATGTCAGGTCCATCTCCTGGACGACAGGAAGCTGGAGCTCCtcgtacagCCCAAGTTGATGGCCAAGGACCTGTTAGATTTGGTGGCCTCCCACTTCAACCTGAAGGAGAAGGAATACTTTGGGATCTCCTACACAGATGAAACTGGTCATTTCAGCTGGCTGCAGTTGGACCGGAGGGTTCTAGAACACGAGTTCCCCAAGAAGTCTGGACCCATCGTCCTGTACTTCTGTGTCAGGTTTTACATAGAGAGTATTTCCTACCTGAAGGACAATGCTACTATCGAACTCTTCTTCCTCAATGCTAAGTCCTGCATATACAAGCTCATTGAGGTGGACAGTGAGGTGGTCTTTGAGCTGGCCTCCTATATCCTACAGGAGGCTAAAGGTGACTTCATCAGTAATGACGTGACAAGGTCAGACCTGAAGAAGCTTCCAGCTTTGCCGACTCAGGCCCTGAAGGAACACCCATCTCTGGCCTACTGTGAGGACCGGGTCATAGAACACTACAAGAAGCTGAATGGACAGTCCAGAGGGCAGGCCATAGTCAATTATATGAGCATTGTTGAGTCTCTGCCTACATATGGAGTACACTACTACACTGTTAAGGATAAGCAGGGAATTCCGTGGTGGCTGGGACTGAGTTATAAAGGAATCTTCCAGTATGACTACCAAGACAAGGTCAAACCCAGGAAGgtgttcCAATGGCGTCAGCTGGAGAACCTCTACTTCAGAGAGAAGAAGTTCTCAGTGGAAGTTCACGACCCCAGGAGTAGGGCGTCGGTGACCAGAAGGACGTTTGGCCACAGTGGTATAGCTGTCCACACCTGGTACGCCTGCCCTGCTCTCATTAAGTCTATCTGGGCCATGGCCATCAGCCAACACCAGTTCTACCTGGACCGCAAGCAGAGCAAGTCTAAGATCCATGCGGCTCGTAGCCTCAGTGAGATAGCCATCGACCTGACAGAGACTGGCACTCTGAAGACATCTAAACTGGCCAACATGGGCAGCAAGGGCAAGATCATCAGCGGCAGCTCTGGCAGTCTGCTCTCCTCGGgttCCCAGGAGTCGGACAGTTCTCAGACAGCTAAGAAAGACATGCTGGCAGCCCTGAGGGCCAGACAGGAGGCTCTGGAGGAGACTCTCAAACAAAGATTAGAGGAACTCAAGAACATCTGTATCAGAGAGGCGgaATTGACAGGGAAGCTGCCTAAGGAGTATCCATTGGACCCAGGGGAGGAGCCTCCGACGGTCAGAAGGAAGATTGGCACTGCCTTCAAGCTGGACGAACACAAGATCCAGCCGAAGGGAGAGgaGGAGGAGCTAGACCGTCTAGAGAGGGAGTTTGCCATCCAATCCCAGATCACCGAGGCTGCGAGGCGTCTGGCCAGCGATCCGCACGTGAGCAGTAAGAAGCTGAAAAAACAGAGGAAGACGTCGTACCTGAACGCGCTGAAGAAACTCCAGGAGATAGAGAACGCCATCAACGAACACCGTGTCCGCTCTGGGAAGAAACCCACGCAACGCGCTTCGCTTATCATAGAGGAGGCCAACATGGGCTCAGAGGACAGCTCTCTGTCTGACGCTCTGGTCCTAGACGACGATGACCCCCAGATGACAGGGACCCCCACCTTCTCTCCGGCAGCGTCTCCCCATAAGGGCCTCCCTCCCCGGCCTCCCTCCCACAGCCGGCCCCCTCCCCCCCAGTCTCTAGATGGCCTCAGCCACCTGCACTACGCCCACTCCGAATACGACAAGTCCCCCATCAAACCCAAGATGTGGAGCGAGTCCTCGCTGGACGAACCCTATGAGAGGGTCAAGAAACGCTCTTCACACTCCAATCACAGGCGGTTACCCGGCTCTGGTAGTTGTGCAGAGGCAGGAGGCAGTAACTCTCTGCAGAGTAGCCCCATCAGGAGTGTTCCTCACTGGAGCTCCCAGTCCAGCATGCCCTCCACCCCCGACCTGAGGACCAGGACCCCTCACTACGTACACTCCACCAGGTCTGTGGACATCAGTCCCACCCATCTGCACAGTCTGGTTCAGCACTTTAGGAACCGCAGCTCCAGCCTGGAATCTCAGGGCAAGCTGCTGGCCTCCGAccccgacacacacactcacacacacaccctgggagCCCCCGGCAGCCCAGACATCTTCCTGGCCCCGGGGACTCGCAGCTTCAATGGCTCTGACCCGTTGGATGACTGTTCGTCCTGTACCTCCCAGAGCAGCTCAGAACACTACTACCCTGGGGTAGCTCCAGGCTCCAACCCAAACTACTCCACCCTAGGAGAGGACTCCCCTTCCaaagccaggcagagacagagacagaggcacaggtctgcAGGTCACCTTGGTTCCTCTAACTCTGGTTCCATGCCCAACCTTGCAGCCAAGAACGGTTCAGGGTGCGGTGGTACGGGGGTGGCAGGGACTGGGTCAGGGCAGCACGGGGTGTACCTTCACAGCCAGAGCCAGCCTTCGTCCCAGTACCGGATTAAAGAGTACCCCCTGTACGTAGAGGGCAGCCCCAACCCGGTGGTGGTGCGCAGCCTGGAGAGTGACCAGGAGGGCCACTACAGCGTCAAGGCCCAGTTCAAAACCTCCAGCTCCTACACAGCCGGGGGGCTCTACAAGGAGACCTGGGGGggcgaggaggggggagaggggagcagCAGACTCACCCCGTCCCGCTCCCAGATTGTACGGACTCCCTCACTGGggcgagaggggggaggaggggggagggcggTGGTGTCAGATGAGTTGAAGTGTTGGTACCAGCGCTCTACGGGCAGTGTAAAGGAGAGGAGTCACGCCGGCTCCAACACGTCGGACAGCGGCTCACTGCAAGGCACGCTGGGACTCGGACGAGGGAGCAGGGTGGGGACACTCGCCAAGGGATCACCAGCGTCCCCTCACAGCCCGAGGAGTGGGACTCCCTCTAGTGAACAGGCCGCAACACCCACGCCCCCCTGCAGCCCACAACACATCCTCAACTGGCAGAGCGGgTCATTCAATGATAGTTGTTTTCTCAGCAGTCCTCTGTGTTCAGAGCTGGCAGATGTCCAGTGGTACGGACACGACAAGGCCAAACCTGGAACCCTGGTCTGACCTACTGACCACCACCTAACACCTACTGACCCttactgaccctcaacactgacCTTTACTGCCTCcaccaacctctcctctagccctGACTAGACTGGCCTCATCATGGACAGGaaaccctcctccatccctccctttatcCATATTTCCCTTTATCATTTTATGTGCATATCAAGTTTGGTTGAGCTGGAGTTTATAGGAAGGACATGCCCAACTGGGCAGGACTATTGCTGTGGAACAGCCAAACAGAACCGCTGAATGATCGTGAACTCTGACCTTTAATCCCTGACCCTGCTTCAGTCTGAGCCCCAGGGAGACCAGGAGTGGGAaaggggggaggtgggggggtaagagcacacacacacacacaaccccctgcCCAGACTACATGGCCCTCAGGCCCTGACTTATATCTACCCCTGACCCCAGTGTGTTGCCAGCCAATCAGAGGATACCTGCAAGATGAAATGTGTTTTGGCTCAAATTCTGGGCCTGTGTGTGTCCGCTGGATCTGCTAGGTTAATTTCATTGTTAAAGTCTTTGTTTATTTCTCTGTATCGTTTTgtacaaaaaaatgaaaatattgcTTGGGAGAGACTCAATTACTTTTTCACCCTTTAGGAAAATTGCAGAGCAGATTATTGGAGAATTGTAGATTATCTGAAAGACAAAAGACAAACGTACAAACATTCCCAACAATTATAATCCCAATCCCAACTATCTATCCCACAACCAAAGATCCACCTGACTGACCAATGGCACCAGTCCCATGGACACACTGGGAACACTGGTTTATCATACTGGAAGCTACAACCCACATACTTGGAGTTTTCAGAGGAACGGAAAGACTGGTCAATTCTACTGGGATCCTGCTGGGAGTTCTGAGCACATCTATTGGGATGTCAGTCATCTGGATTGGGGGTGTACAACAGCCAGCCAGATTGATCAACTAGTCTCTGATACTGGGACTATCCACACTGCTACTGAGCAGTGAGCTCCTGGACTTGGATGTTTTGCCACTATGCTGGGGCACTGTGCTTAGCTGTACTGGGAGATTATGGGCGAACTGGGGGCCCTGCACAGCCAGACCAcaaacagacagggacagacgcGGGGCCCTGCACagccagatcagagacagacggacagaatGGGGGCCCTGCTCAGCCAGACAGGGACGGACTGGGGGCCCTGCACAGCCAGACCAcaaacagacagggacagacagatcagagacagacggacagaatGGGGGCCCTGCTCAGccagaccagagacagacagggacggaCTGGGGGCCCTGCACAGccagaccagagacagacagggacggaATGGGGGCCCTGCACAGccagaccagagacagacagggacggaATGGGGGCCCTGCTCAGccagaccagagacagacagggacggaATGGGGGCCCTGCTCAGccagaccagagacagacagggaccgaCTGGGGGCCACAGACACTTCTTCAGGGTTTGGGTCCTGGAGAGCCAGAATATGCTAGGAATCTCTTGCTTAAAGCTAATGTCTTGAGTTTGGGTGAAACTGTAGCTATGTGTGTAGTAGTTTTGGGTTGAATTGGAATTAAGACCACATGTAGTTTTGTGGGTTTATTTCCAAACATATCTGCAGGCTTTCAGTGGTCTATTTCATCtggctcctccccttcatttgaCTTTCTGGTGAGAGGTGAAAGCTAATTGGATGTTTAGGGCTGTGTGGAGCTGTCAATCACACAGTTGTAGCGAAGGGCACACCCCTCCCTCACAGTCGAGCTGTGCATATGATGAGATTGGTGAGATATTAAACACTTCTCCATGCGTTGTGACATCATATATCTGACTGTCTGTGCAGTCCTATGTTAAAAATGGGATGCAACCCATGTTTAAggaccagtctgtctgtgtcacgtcaatctgtcagtctgtctgtccaaCCCCAAGATTGGTCATTGTCTCAGACACCAGTGTAGTATATTTGGGGGTTAATATTTAGATAAAGCTTGAAACCTGTAAACTCCAGAAGGTTCTCATTTGTACAGGTCATTATCTCAGGCTATACTCTCTCTGCCTAACATCTATCAAccggtcagaacacacacacatcttgtgtgtggattcacacacacacacattcttttcTCAGCGGTGCCATCTATGTCTGTACTCTAACCCAGCACTGAAAACCAGGGGCGCTACTTTCACTGGGGGCGGGGGggacacattctgaaattgcatttttgtcatccccagttttatcattggaatgttaTACAAAActaggcaacggtgtgctttaggaccatgcggacgccttcgagcggtcgggtaggctgtttggaatgttaataataataataataataataatatgtccCCCCAACTTCTTAAACCAAAGTCGCGCCCCTGCTGAAAACAGCCGCTCACTAAAACTACAAACCATATAACTATAAATCCCACAGGGCCCAGTTCCTAGTCTAGCAGAGGAAGTGTCTGCTGTATAGAGATCCTGCTTCCCAGAGCCAAATGAACAGCAGGAAGAGGTCTATACACCAATCAGAGATATGTCAAGTTAAGTATTCAATCTAAGTTTTGATACCAGAGCACAACATACACAGTTAAACACAATATATGAAAactatgggctcccgagtggcgcggcggtctaagacactgcatctcagtgccagaggcgtcactacagtccctggtttgaatccaggctgtatcacatccggccatgattgggagtccgatagtggtggtgcacaattggccgaggtaggcagtcattgtaaataagaatttgttcttaactgaattgcctagttgtTTTATAtataaacaataggcctataataTACAGAACCAGTTTTCATCTAGTTCTCCTCCTGACTTTTTGATACATATAAGGGGATTAAGAACATCTGCATAACAACACATTCATGATGTAAGAGTAAATCCAGACTTAATATAaaaaagtaacacacacacatatagtatAGAAATAATGTCACACCAGAACCAAACAGGGTGTTTATATTATTGTGCTTCtattactacactgaacaaaaacataaatacaacatgtaaagtgttggtcccttgtttcatgagctgaaataaaatatcccagaaatgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38752 lncRNA downstream 7201 32522679 ~ 32523065 (-) True G34260
TU38749 lncRNA downstream 12809 32517213 ~ 32517457 (-) True G34257
TU38739 lncRNA downstream 26717 32503328 ~ 32503549 (-) True G34248
TU38733 lncRNA downstream 52911 32477134 ~ 32477355 (-) True G34242
TU38695 lncRNA downstream 83865 32444925 ~ 32446401 (-) True G34210
TU38841 lncRNA upstream 30075 32659555 ~ 32659797 (-) True G34330
TU38849 lncRNA upstream 34339 32663819 ~ 32664050 (-) True G34334
TU38855 lncRNA upstream 42378 32671858 ~ 32672058 (-) True G34339
TU38857 lncRNA upstream 43732 32673212 ~ 32673419 (-) True G34341
TU38859 lncRNA upstream 46340 32675820 ~ 32676233 (-) True G34343
XM_021598754.2 mRNA downstream 29431 32485245 ~ 32500835 (-) True LOC110521272
XM_021598746.2 mRNA downstream 29432 32485245 ~ 32500834 (-) False LOC110521272
XM_036975742.1 mRNA downstream 29433 32485245 ~ 32500833 (-) False LOC110521272
XM_021598730.2 mRNA downstream 29434 32485245 ~ 32500832 (-) False LOC110521272
XM_021599082.2 mRNA upstream 131717 32761197 ~ 32783714 (-) False LOC110521494
XM_021599091.2 mRNA upstream 131717 32761197 ~ 32783976 (-) False LOC110521494
XM_021599101.2 mRNA upstream 131717 32761197 ~ 32783979 (-) True LOC110521494
XR_005051510.1 mRNA upstream 209965 32839445 ~ 32844732 (-) True LOC118964459
XM_036976052.1 mRNA upstream 245436 32874916 ~ 32924599 (-) False grm3
TU37804 other downstream 544116 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 1085317 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1397375 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3249566 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 3825910 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 477639 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 812888 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1238078 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1648220 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1712082 34341562 ~ 34381232 (-) True G36196

Expression Profile