RNA id: XM_021599091.2


Basic Information

Item Value
RNA id XM_021599091.2
length 1561
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110521494
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32761197 ~ 32783979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCATTTAAATGTTCTATGGGCCGAATGTGTATGTAGGGCAGTTGAACAGTTTCATAGAAGCACCAAATCAGATTCGCAGACACACCTAAACGGAGAAGTGAACTGGAGAAGCACTGATGAGGCTCAAAACCACTTTGCCCTTTTAATTATTTAACTAGTCGACTTGGAGAAGTAGCGTCGGGATCGATTTTAGATCGGTGTGTGGAcccaggtctgtctctgtctcggggCAGGAGTGTGATGGCTGAGCCGGACTATCTGGAGGGGGACTGTGAGGAGATGATCAAACCGAAGAAGCTGTTGAACCCAGTCAAGGGCTCCAGAAACCACCAAGACCTCCATCGAGAACTCATGATGAACCAGAAGATGGGCCTAGCTCCCCAGAACAAGCCAGAGCTCCAGAAGGTTCTGGAGCTGAGGAAGCGAGAGCAGGTTCTCAAGGCCCAGAGGGAGGAGCAGGAGGCCCACACCAAAAGGAGCGACCTGGAGATAGAATTAATGAAGAGACAACAGAAACTAGAACAGCTGGAGTTGGACCAGCAGAAGgatgaggaggagcaggagaacaCCCCTGAGTTTGTGAAGATGAAGAGCAATCTTAGGAGGACCAAGCAGGAGGCTAATGGGGAGGAACGTACCACTTAGGGGCCCATGGGGGGGGAGAATgtttgagagagaaggagagggcaaCTGTGTACATAGaggtatgtttgtgtgtttgtgcagagTCTATGGCACATGTCATCTGAGGTGGAATTCACTTCCTGATTCTGATTTTTCTGACCCTGTTGAGAAAGACTACAGACAATTTTGTCTGTCTACTAAATACCAACAGTACTACAGACCTCTTTGTCTGTCTGCTACAGCACTCACCACAGGCAGTGACCAAGGAAACTTAACCACGTCAGCTTCTCTCACCAACAGACCGACTTTGCAGAGAAGAGAATCCCCTATAGACTACAGACTGCTTTGTCTGCCTGCTGTAGTACTCACATCAGCATCTCcactcaacacacagacagagaggagacttaACATGGACACAAAACACGGAACATGCTACACATGGACAGTCAGCCAGTCTTCTTGGAAGCCTGATGCAGGGACAAACAGAACCCACacattccctctctcctgtctgctcctctctctccggCCACAGAAAGTTATCCTTCTGTTATTGTTGTCGTTGTTTTCATTTTCAGAACCCAGAATAGAAAAGCGGACACTGGATGGACTCTTAAAACTGTGTTTTGTAAAAATGCCAAATTAATGTGCTGTTATTTATGTTTGTAGCATTTTAGCCCCATGTAGGGAGTGTGTGAGACATCTGTTTAGTTTTACAGCTCAATGTGTGGAACCTGAGCAGGACAGGACGAGTGTTTGTGTGAAAAAACACCCaggttacttttttattttttatctccaACATACCACTTCCTCAGCTAATGCTATTTGAAGCAATACTAGAACCCCTTTCAAGTGTGAGACTTTTCTTTCTATAATTATAATGGTTTCTATAATTGTTTTTTGTATGAATAAAAGTGACATTAAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38865 lncRNA downstream 423 32760172 ~ 32760774 (-) True G34348
TU38934 lncRNA downstream 6443 32754388 ~ 32754754 (-) True G34406
TU38923 lncRNA downstream 6995 32749788 ~ 32754202 (-) False G34399
TU39007 lncRNA upstream 50691 32834667 ~ 32835184 (-) False G34458
TU39006 lncRNA upstream 50859 32834835 ~ 32835184 (-) True G34458
TU39005 lncRNA upstream 51270 32835246 ~ 32836115 (-) True G34457
TU38967 lncRNA upstream 83655 32867631 ~ 32904939 (-) False grm3
TU38972 lncRNA upstream 83655 32867631 ~ 32874505 (-) False grm3
XM_036975949.1 mRNA downstream 26748 32530266 ~ 32734449 (-) False LOC110532201
XM_036975959.1 mRNA downstream 75271 32530266 ~ 32685926 (-) False LOC110532201
XM_036975962.1 mRNA downstream 75271 32530266 ~ 32685926 (-) False LOC110532201
XM_036975929.1 mRNA downstream 113140 32530266 ~ 32648057 (-) False LOC110532201
XM_036975922.1 mRNA downstream 113141 32530266 ~ 32648056 (-) False LOC110532201
XR_005051510.1 mRNA upstream 55469 32839445 ~ 32844732 (-) True LOC118964459
XM_036976052.1 mRNA upstream 90940 32874916 ~ 32924599 (-) False grm3
XM_036976060.1 mRNA upstream 90940 32874916 ~ 32924599 (-) False grm3
XM_021599223.2 mRNA upstream 940873 33724849 ~ 33729966 (-) True lrrc4.2
XM_021599259.2 mRNA upstream 1160858 33944834 ~ 33953935 (-) False rbm28
TU37804 other downstream 775047 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 1316248 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1628306 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3480497 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 4056841 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 323143 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 658392 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 1083582 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1493724 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1557586 34341562 ~ 34381232 (-) True G36196

Expression Profile