RNA id: TU38966


Basic Information

Item Value
RNA id TU38966
length 387
lncRNA type sense_over
GC content 0.40
exon number 3
gene id grm3
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32867631 ~ 32924599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aCTCTGAGGGATCAGGAGTAAGACAAACTCGCCTCAAGTGCTCAAATAACTGCAAGATTTGCGCGCCTCACATTCTAAATAAAgTTTCTCTGGTGATGTAGCTATGTACCATGacccagaagctctttgtcttgTCTGGTTCTTGTCAGaagGTCTGATGTCTAGACCGTGTGCTCCTTCATGTGTGGTCCAGTTGAACTCTCCTTGACCATTCGATGGACCACAAACAGACCAGCAGCTACTGTGACCGCACTACTTCACCTTGACTCTTCACCCCTTTACCTTTGAACCCTCACCCCTGACCCATACTCTTGACCTCTAACCCCTCACTCCAAACCCTTAaccttactcctctcctctcctctcctctcatctcctctcccctcc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38972 lncRNA downstream 18351 32867631 ~ 32874505 (-) False grm3
TU39005 lncRNA downstream 56741 32835246 ~ 32836115 (-) True G34457
TU39007 lncRNA downstream 57672 32834667 ~ 32835184 (-) False G34458
TU39006 lncRNA downstream 57672 32834835 ~ 32835184 (-) True G34458
TU38954 lncRNA downstream 86730 32778661 ~ 32806126 (-) True G34424
TU39059 lncRNA upstream 29033 32953623 ~ 32953861 (-) True G34510
TU39649 lncRNA upstream 126709 33051299 ~ 33059262 (-) True G35052
TU39776 lncRNA upstream 312574 33237164 ~ 33239834 (-) True G35177
TU39886 lncRNA upstream 476595 33401185 ~ 33481308 (-) False G35272
TU39882 lncRNA upstream 552931 33477521 ~ 33481308 (-) True G35272
XR_005051510.1 mRNA downstream 48124 32839445 ~ 32844732 (-) True LOC118964459
XM_021599101.2 mRNA downstream 108877 32761197 ~ 32783979 (-) True LOC110521494
XM_021599091.2 mRNA downstream 108880 32761197 ~ 32783976 (-) False LOC110521494
XM_021599082.2 mRNA downstream 109142 32761197 ~ 32783714 (-) False LOC110521494
XM_036975940.1 mRNA downstream 263374 32533391 ~ 32629482 (-) True LOC110532201
XM_021599223.2 mRNA upstream 800259 33724849 ~ 33729966 (-) True lrrc4.2
XM_021599259.2 mRNA upstream 1020244 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA upstream 1020244 33944834 ~ 33953935 (-) True rbm28
LOC118966666 mRNA upstream 1034738 33959328 ~ 33962096 (-) True LOC118966666
XM_021599303.2 mRNA upstream 1058787 33983377 ~ 34002282 (-) True LOC110521614
TU37804 other downstream 906706 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 1447907 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 1759965 31131893 ~ 31132891 (-) True LOC110520932
TU34164 other downstream 3612156 29280276 ~ 29280700 (-) True G29906
TU33578 other downstream 4188500 28703887 ~ 28704356 (-) True G29355
TU39673 other upstream 182529 33107119 ~ 33108497 (-) True G35075
TU39914 other upstream 517778 33442368 ~ 33452413 (-) True G35299
TU40263 other upstream 942968 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 1353110 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 1416972 34341562 ~ 34381232 (-) True G36196

Expression Profile