RNA id: XM_021599223.2


Basic Information

Item Value
RNA id XM_021599223.2
length 4888
RNA type mRNA
GC content 0.51
exon number 2
gene id lrrc4.2
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33724849 ~ 33729966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAGGACAAAGGGAAAGGGCAGAGACAGTCTTAGCTCctctcaagacacacacacagggaaaaaAGAGAGGCTGTAGAATAAATaacaagaagagaagaggagatggggatTGGAATGCTGCTGATGCTGCGACGGTGTCATGCCTGTGTGCCTGCTTGtgtgcctcctctctctcttccgctctctcactctcccttttgctttccccctctctcgcttCCTATCTCTCTACTCCACAGTGGTTACTGCAGTAGTCCAGCAGCCAGTCGGGAGCTTCTCTGCCACACAGAGAGCTAACTGCCACAACTTGCTACCTCACCTCATACCTACAGCCCTCAGTCCTGAGCTCAGCCCTGGGGATCAACTTGTAGACAaccaggacagacagagggatacgGCAggagacacacacctcaggggaGAGGGCACCAGGCCAGGAGCACCCCATTCCTGGCTCATTTTACGGATAGCAGCTACAGATATATACCCTTCACAGCCACCATCGCATCCACACAACAGGAAtctactcctctctttctctctaaagcGTAGCTCCGGCAGCACTgcgctcccctcctcctccctcctctctaaccagcaccaccaccacacccccccccccacccccccaggaGGAATCGCTGGATTATTGCTAACTATGCTGCACGCGGCAGGCTGCAGCTGCTATAGACACAGCCAGGCAAACCAACGCAGGGAGAGGaccagaagagaagagagaaaaagagagaatagGGGGGTGACTGCATCAGGAGTCCTTTagcttttccctctctctctttctccatccatcAGAGCGGGGCTAATCAGGCACAAGCTAGCCGTCGGCAAAGTCACAGAGACGGAGGGCTCTCTGccgacactcacacacacagaaacaaaggaACACGCTCACATGCACGAGGACCTGCCAAAACGGGGGATTTTTTATGACTTTTATTCTGTAATTTTTTCCCTTCTGCTCAGTGTATCTGGCTTATACTGCGTGATGGAGCAGTTTGATTCGTCAACAGAGGGGGCTGTGTGTCTGCGGCtgcaggcagggagagggggagaggaggggggctggGGGACACCAGGCACCTGCTTAGCTTAACCCACACGGCCTGTCCTTTCCCACCGAGCCTGTAGTCTCTACACGCTGCTCCACTCCGCTCTGCTCCACTCCGCTCTGCTCCACTCTCACCACGGGCTAATAGGAGACATCTTGTTCCATTGGTTAACACAGGGACATTACCACCACATTCCAGAGGAAGGAGAAGAactgaaaataaatatatttttcactTTTCGGATTTTCCATTGAAGTGAACTACACGGCTGTGGTTTGTGATTTTCGTAGTATTCGGAAAGGAAGAAGAAACAGGCCATTTCAGAACTAATGAGcgTCTCCCAGTCCCGTCGATGGCGTGGCGAGCCCTGTCCTTGTTCCAGCCAGGGTAGGAGGGTGGTGTGTCCTCCTCTAGCGTCTGTCTCCCCCCACCATGCTGAAAAAGAGTCCTCCGAACCATGAGTCCTGTGGGCCAGGTTTCTCTGCAGCCCACCTGGAACGCAGCCCTGCTCACCCTGCTAGCCCTCACCATGGTGCCAGCTCTCAGTTTGTACCAGCCTGTCGGCCTGGGTGCTCCCTCTAACCCCCAGAACTGCCCGGCAGTGTGCTCCTGCACCAACCAGCTTGCTAAGGTGGTGTGTACGCGCCGTGGCCTGGTCAGGGTGCCCCCCGGGATCCCCACCAACACCAGGTACCTCAACCTGATGGAGAACAGCATCGAGACCATCCAAGCTGACACCTTCAGACACCTACACCATCTTGAGGTGCTGCAGCTGGGCAGGAACGCCATCAGGCAGATTGAGGTGGGGGCCTTCAATGGCCTGACCAGCCTCAACACCCTGGAGCTGTTTGACAACAGACTGACGGGGATCCCCAGCGGGGCCTTTGAGTACCTGTCCAAGCTGAGGGAGCTGTGGCTGAGGAACAACCCCATCGAGAGCATCCCGTCCTATGCTTTCAACAGGGTGCCCTCTCTGATGAGGCTGGACCTGGGAGAGCTCAGGAGGCTGGATTACATCTCTGACGGGGCATTTGAGGGCCTGCAGAACCTCAAGTACCTGAATCTGGGGATGTGTAACCTTATGGAGATGCCTGTCCTGTCACCCCTGACAGGCCTGGAGGAGCTGGAGATGTCTGAGAACACTTTCCCTGAGATGAAGCCTGGCTCGTTCCGTGGCCTGTGCTCCCTACAGAAACTCTGGATTATGAACTCTGGGATCACCGTGATTGAGAGGAATGCTTTCGATGACATTACGGCGCTGGTGGAGCTGAATCTAGCCCATAATAACCTGTCGTCTCTCCCCCATGACCTCTTTGCCCCGCTGCAGTACCTGGTGGAACTTCATCTCCACCACAACCCCTGGAGGTGTGACTGTGACGTGGTCTGGCTGTCCTGGTGGCTCAGGGAGTACATCCCCACTAACTCCACCTGCTGCGGCCGCTGCCACTCCCCTGCCCACATGAGAGGACGATACCTGGTAGAGGTGGACCAGACCACATTCCAGTGCTCTGCTCCATTCATCCTGGATGCTCCCAGGGACCTCAACATCTCTGCAGAGAGAGTGGCTGAACTCAAGTGTCGTACAGCCTCCATGTCATCGGTCCGATGGCTGCTTCCTAATGGGACCGTTCTGACCCATGGCTCGGCTCACCCTCGGATTTCTGTCCTTAACGACGGAACACTCAACTTCTCCAACGTTCTGCCATCAGACACAGGCGTCTACACCTGCATGGTGACTAATATGGCGGGTAACTCCAATGCCTCGGCCTACCTGAATGTCAGCAATGCAGAACTCAACACCTCCAACCTGTCCTATTTCACTACACTGACTGTGGAGGTGCTGGAGCCCACCGTAGAGGAGATCCCCAAACCCAAACCCACCATCCCAGCCTCGCCCTCTGTGTTCCAGCCCGTCTTCATCTCCACACCCACTGTGTTACTCCAGAACACCCAGACCCCCCGCCAGATATCTCTCCCCACGGCCCGTGGCCCCATCCACCCTCCCCCCAGCCTGGATGAGGTCATGAAGACAACCAAGATCATCATTGGCTGCTTCGTTGCAGTGACACTCCTGGCCGCCGCCATGTTGATTGCCTTCTACAAGCTGCGTAAGCGGCACCAGCAGCGGAGCACGGTGGCAGCGGCGCGGACCATCGAGATCATCCAGATGGACGAGGAACTTCCCCAGGTTCCATCGGCCAGATCAGGTTCTAGCGGGTCTGAGGAGACTGGGCTGGCTCTGCCCATGTTACTGGAACACAACAGCACCGTCTTCAATAAGGAATACATCTCGTCGTCCTCATCGTCCTcccacagagacagggacagacacagagacagggacagggacagagctgCCTATGGGGCTCACTGGACCCATAACAACCTGGGAAACTCCCTGCACCGCTCCTCCAACCGCCAGTATTATCAGCAGCACCACAGCCTCATCAGTACCATCGCAGAGCCGTACGTCATTAAGCCAACTCACACCAAGGAGAAGGTCCAAGAGACCCAGATCTAAGGGACTCATGCTGGCCTTACTGTGGATCTAGCTGTGTGGATCTAACTCAGTGGATTTCTATATGTATCTGACTttaccccttcctctcctccttttctctctgctCACCAGTCCATGCAATAGAATGCACAAAGAAGACAGTAACTTTATTTTGTACAGAGTGCAAAATAGAGACAGTTTTTTTCTCTCTTGTACATGCTTATACATAAATAtagaaatataaaacatataaaataaatatactaTGAGGACAGTGGTGGAagattatatttaaaaaaaataaagtacaatttaaactattttctaatAACTTGTAACTTCTATTTAAAAATGAGAGATGTTGAGATGCAGTGGGGGTAGCCTATATGATGATTGATTGAGGGAGCTGTCTTGAGGAAGACTGTTCTGTTTGTTATTTTGACCATTTAGAATGCAGTAAAACCCCTTTATACCCACACCAGTTTATAGAACAACAAGCCCTAACATCAGATCAGTCTCCACAGGTTAAGTTTGTTAAAGCACCAATTCGTACTGTGCCAAACGTTGCAATAAAAGACTGGAAGATTAAGAAAACCAACAGCCACAACCAAGCAAAATCTAGACAGAGAGTCATTTGTCGAGGGAGAGCTGTGGAGAGAAGAGTGTAGATTTTGCTGTTCAGTCGCTATCAGCCAAATGTTTTCAGACTGCAGTGGATTTCTGCAGCTAAGATTTAACCCTTTGTTTATCGGAGCGAAGCTGCACGTCTTTTTAAAAGCATCTCTTTTTTATGTTACTGAATCTAAACCCATTTAGTATGATTGCATTTGATTTATCCCAGGTCCCCTTGGCTAAGATGAAGGACAGGCTATTTTGAATGGTGATTTGGTGTGATTACTTCATGCAGATTTCAGTTGCATAATGCattatgttttatatttattttcctttcctTGGGTTGCGACATGCTTCTTAATAGCATTTGTAGTGTTTTGGGTTAATGTAGTGATGCATTAAAGCAGTTATTTGCCTGCTCTCTGTAAGAGCTCTTCTATTGGTAATCCCTCACAGATACCGACATGTGGTGCAGAACGACTGGGGTTTGCTGACCGATctgcttttgaaagaaaaaaaggAGTGGTGTTGAAATTAAATGAATGTCTGGACATTGGGCTTGTTTCTCTGTGGACGTAATTGAAACAGTGAAAtatcgttttttttattttccttaTTGTAGGTATTATTTCGAGCATTATGGGGAGGCTATAAGGATGCAAAAATAAACAAAACCTTTGGTTTGTATTTCTCTACTCGGA

Function

GO: NA

KEGG:

id description
K16351 LRRC4, NGL2; netrin-G2 ligand

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40012 lncRNA downstream 75510 33646428 ~ 33649339 (-) True G35392
TU40055 lncRNA downstream 85584 33638664 ~ 33639265 (-) True G35435
TU39998 lncRNA downstream 161645 33562957 ~ 33563204 (-) True G35382
TU39992 lncRNA downstream 170505 33554040 ~ 33554344 (-) True G35376
TU39991 lncRNA downstream 171365 33553108 ~ 33553484 (-) True G35375
TU40162 lncRNA upstream 51424 33781390 ~ 33781624 (-) True G35529
TU40221 lncRNA upstream 75225 33805191 ~ 33865691 (-) True G35586
TU40233 lncRNA upstream 94447 33824413 ~ 33824779 (-) True G35598
TU40245 lncRNA upstream 110720 33840686 ~ 33856915 (-) True G35610
TU40650 lncRNA upstream 203055 33933021 ~ 33933259 (-) True G35958
XM_036976052.1 mRNA downstream 800250 32874916 ~ 32924599 (-) False grm3
XM_036976060.1 mRNA downstream 800250 32874916 ~ 32924599 (-) False grm3
XR_005051510.1 mRNA downstream 880117 32839445 ~ 32844732 (-) True LOC118964459
XM_021599101.2 mRNA downstream 940870 32761197 ~ 32783979 (-) True LOC110521494
XM_021599091.2 mRNA downstream 940873 32761197 ~ 32783976 (-) False LOC110521494
XM_021599259.2 mRNA upstream 214868 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA upstream 214868 33944834 ~ 33953935 (-) True rbm28
LOC118966666 mRNA upstream 229362 33959328 ~ 33962096 (-) True LOC118966666
XM_021599303.2 mRNA upstream 253411 33983377 ~ 34002282 (-) True LOC110521614
XM_036976155.1 mRNA upstream 279314 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
TU39914 other downstream 272436 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 616352 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 1738699 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2279900 31426123 ~ 31444949 (-) True LOC110521048
TU37184 other downstream 2591958 31131893 ~ 31132891 (-) True LOC110520932
TU40263 other upstream 137592 33867558 ~ 33868045 (-) True G35628
TU40852 other upstream 547734 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 611596 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1543743 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1710952 35440918 ~ 35441328 (-) True G37907

Expression Profile