RNA id: XM_021599268.2


Basic Information

Item Value
RNA id XM_021599268.2
length 3132
RNA type mRNA
GC content 0.47
exon number 18
gene id rbm28
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33944834 ~ 33953935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCCGGAAATTACGGATTACAACTTCCTTTCAATTCCAAGATGGCTGCCACATTCGGAAAACGTGTGTTGACCATTTCAACAAATTAGCGTTTACCATGCTTTCATACAGTTTTCCTATTATTTTGATTGACAATTTAATATATTGGAAGTAAAGACTATTTGTTTGGATAGTTTAGAATTATCTGTGGCGAGTATACATTTGGAAGTGTTGGAAagaaagtagctagctagtttgttagcTTGCCAGTGTGTTCTATTGGTTGACTGGCTAACAAAAAGCAACAGTGATCAGAACAAGAAACGTAAGGTTTTAGCACAGAATAAGCCATGTCAGCCCTTACAATATTCGTCCGGAGTTTGCCAGCAGATGCATCTAACGACCGCCTGGAGGAGATATTCTCTGAGATTGGACCTGTGAAGCACTGCTTTGTTGTCAAGGAAAAAGGTGCAGAGAAATGTCGGGGGTTTGGGTATGTCACTTACTCCATGGAGGAGGATGCACAGCGCGCTGTGAGAGAGGTGAAAGACTATGATGGAAAGAAGATAAACGTGTCGGTGGCCAAGAAGAAACTAAACGACAAGAAAAGGGGAACAACAGCCACGGCACCAAAAGATCCAGGACCACAAAAAGAACAGAAATCTGAAGGAGGCTTAAAGAAAAACCGAAGGAAAGCCAGACTGATCATCAGGAATCTCAGTTTCAAGTGCTCGAATGAGGATCTGAAGCAGACCTTTGCCAAGTTTGGGACAGTTCTGGAGGCCAACATCCCGCTCAAACCAGATGGGAAGATGAGGGGCTTTGCGTTTGTCCAGTTTAAGAACGTCTTAGAGGCAGGAAAGGCCTTGAACGCCATAAACCTGAAAGAGATCAAAGGAAGGCAGGTAGCTGTGGATTGGGCTGTGGCTAAAGACAAGTTTGTCGCTACTCAGCCAGGAGCTAAGAAAGAGGAAAAGGTTGCAGCAGAGAAAGCGGCACCTGAAAGTGActctgaagaggaggagaaggtggaggaagaggaggagaagaaaccaGAAGCACATTCAAAGAACAAAGTCAGCTCTAAGCCAGCTCAGCAGCCAGACAGCCCATCAGAGCACGAGAGCGAAGAGGACGATGGAGAGGATCATGAGGAGGATGAAGATTCAGAGTCTCAGGAGTCAGATTGCGATGAAACAAGTGACCTTGGGtctgatgaagatgatgaagaaGATGATGAGGATTCTGACAGTGCAGCCAACAGGAAGCCCCTCCCATCAGATATTAATCAGGGCAAAACCATCTTCATCAGGAACCTGTCGTTTGATACGGAGGAGGAGGGCTTAGAAGAGGTGTTACTGCAGTATGGAGAACTGAAGTACATCAAGATCTGCCTACACCCAGACACTGAACACTCTAAAGGTATTGCATTTGCTCAGTTCAAGTCTAAAGAAGCAGCAGAGAAATGCATTGCTGCTGCAGAGGACGAGTCAGAGagcGGGGGTATCCGTGTGGATGGTAGAAAGCTGAACATTGTAGCGGCGGTGAGCAGAGAGGATGCTGTCAAACTAAAGGACAAGAAGGTTAAAACTCATACAGGGACCAGAAACCTCTACCTGGCTAGAGAGGGATtgatACGGTCAGGAACGAAGGCAGCTGAGGGTGTTCCAGCAGCAGACATGGCCAAGAGGACCCGATTTGAGGACCTGAAGCTGACCAAGCTACGGGACATTAACGTGTTTGTGTCTAAGACCCGCTTGTGTGTCCACAACCTGCCCAAATTTGTAGACGTCAAACAACTACGAAAACTCTGCCTGAAAGCTGCAGGGGGTGGCAAGCTGGTCCGCATTACAGAGtGCAGGGTGATGTATGATAAGAAGCCGGAGCGTGGTCAGGTGTTAGGCCGGTCGCTAGGTTACGGCTTCGTTCAGTTCCAAGAACATGAACACGCTCTGAAGACACTACGATACCTCAACAACAACCCTGACATCTACGGAAAcaccaagAGGCCCATCGCTGAGTTCTCTCTTGAAGATGGAAAGAAGCTGAAGATGAAAGAAATGCGACAACAACAAGTCAAGGAGCGTTTCAAAGGGCGGGGCCCTCAGGGAGGAGTGAAGCCGCAGTCTGTAGGCAAGACTGGACCTCAGAGGTGTGCGTCTAAACCCCAGAGTGCCATGGTAACGAAGGAGGGGCCAGCGAAGACGCAGACACAGTCATTACCATCCGGACAGGACAGAAAGGATGGAGTACCTCCCCCCCAGCCACAGGCCCAGACTCTGTTCCATGCCCAGACCCAGCCGCAGGCCCAGACCCAGCCACAGGACCAGAACCAGGGCCGGCAGTATGCAGGCTTCCAGACCACCCCGGTTCTAGAACATGTAGAACTGGAGGATGGAAAGAAAAGACGGAAGGTTCTAGCCCTACCTTCTCACCGTGGCCCAAAGATCAGGGCACGTGATAAGGGGAAGCAGCAGCCTGCCCAGCCTAAGAAGCCCAAGAACCGTCCCAGCAGGAGAGAGCTACAGGGAGGAACGTCACTGGAGAAACCTACACAGCCCAGAATAAAgAGCGCAAAGGGGGCCAAGAAGCGGTTTAGGAGCCAAGAGGATGACCGCTTTGACAACCTGGTTGAACAGTACAAGAGAAAACTGATGGGCGGCAACAAGACCACAAACATCAAGAAGAACAAATGGTTCAACAGTtagttgtgtgtgagagagagcgaggccaTTTTTTGGTATACCCCAATAACCTTTTCCTTATGTTGGTTTCTACATCATTGACATGTTGAAACAAGGGTATGATGGTTGGAATAACATTGACCCATGAACTGTGTATAATGAAGGAGAGTCCGGCGTAGTACACTGTCATATGTCTGTGTCCTCATGTTATACACAACGTGTGGTGTGCCATCAGTGGTAAAGGAAAGCTAAGAGATGGAATATCGGAATATAATTAACTTCCTGAATTGACCCCGACTCTGACAGACTGCATCAGCTGGAAGCATATGTGTGTTCTTCACAACAGATGCTGATGCTTTActctgtactgtgttttatgttcatgttAACTATTGGTCAATAATAATGTAAAGAATATGAGCTTTCAAAAAtgtaaattacatttttattaaagAACTTACAAAGACAA

Function

GO: NA

KEGG:

id description
K14573 NOP4, RBM28; nucleolar protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40658 lncRNA downstream 1862 33942726 ~ 33942972 (-) True G35966
TU40656 lncRNA downstream 5784 33938838 ~ 33939050 (-) True G35964
TU40653 lncRNA downstream 8366 33936214 ~ 33936468 (-) True G35961
TU40652 lncRNA downstream 8673 33935889 ~ 33936161 (-) True G35960
TU40650 lncRNA downstream 11575 33933021 ~ 33933259 (-) True G35958
TU40661 lncRNA upstream 566 33954501 ~ 33955468 (-) True G35968
TU40672 lncRNA upstream 14122 33968057 ~ 33968349 (-) True G35979
TU40662 lncRNA upstream 15255 33969190 ~ 33970767 (-) True G35969
TU40675 lncRNA upstream 19571 33973506 ~ 33973779 (-) True G35982
TU40679 lncRNA upstream 20340 33974275 ~ 34068011 (-) True G35986
XM_021599223.2 mRNA downstream 214868 33724849 ~ 33729966 (-) True lrrc4.2
XM_036976052.1 mRNA downstream 1020235 32874916 ~ 32924599 (-) False grm3
XM_036976060.1 mRNA downstream 1020235 32874916 ~ 32924599 (-) False grm3
XR_005051510.1 mRNA downstream 1100102 32839445 ~ 32844732 (-) True LOC118964459
XM_021599101.2 mRNA downstream 1160855 32761197 ~ 32783979 (-) True LOC110521494
LOC118966666 mRNA upstream 5393 33959328 ~ 33962096 (-) True LOC118966666
XM_021599303.2 mRNA upstream 29442 33983377 ~ 34002282 (-) True LOC110521614
XM_036976155.1 mRNA upstream 55345 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
XM_021599348.2 mRNA upstream 71250 34025185 ~ 34040439 (-) True LOC110521650
XM_036976369.1 mRNA upstream 246420 34200355 ~ 34245388 (-) False iqsec3b
TU40263 other downstream 76789 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 492421 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 836337 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 1958684 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2499885 31426123 ~ 31444949 (-) True LOC110521048
TU40852 other upstream 323765 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 387627 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1319774 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1486983 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1629357 35583292 ~ 35583608 (-) True G37976

Expression Profile