RNA id: XM_021599303.2


Basic Information

Item Value
RNA id XM_021599303.2
length 3302
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110521614
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33983377 ~ 34002282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cCGCTAGCTCAGCTCCCAGGGCTCTCCAGGACTCTCCAGGACTCAGGGGGGGGTGCTCTACCCTCACAGTATCCTCTCCTCGCTCCTTGTTGGGGCTCACCTCACTGCCTGAGGCCGGGGAACATCCAGGGGACATCTAGGTGACACTCACTCAGCCTCACCCAGGACCTGGGACTTCAGCTCCAGCTCGGCTCTCTAAAACCGGCTCCTCCTCAAAGGCCTTCTGAGCCTGCAACGTGACCCACCCTTCTTCTGTCtgactaagagagagagggaactgtcATTCTATCTCAGGCCTCAACTCCCATGCACTGTATCTGCAGAGAAGCTAGAAGATAGGAGAATACCCTAAAGACAGAGACCGGATGATTTCAATTTGTCCTACTGATATCGTCATAAGAGATAAGACACAgcagtgagagtgtgtgtctgtgtatttctTATAACGAGTGTGACACAGACCACTCTGTGTCAGCTGTGTGTTAGAGAAAGAACACACACTGGGGAAGACTTTTCTTGTGGCATTTGAtgtgcagatgtgtgtgtgaCATGCCAGGTGTGTGACTCATTGTAGTTGTCAGGCATTGAATGTGCATTTGAGACGTGAGTGTGGCCTTAAGTGTGCGAGAGGCTTTGGTTTCCTCTGGATTTCTCTGGGATGGAGGGTCAAGGCTACGACCGGTTTGGTGAAGGTGAGCGTGACACCTACCAGATCGACTACCGCTGTATCGTTGGTGATACTGAGCCCGCTAGGCCGCGTCTCTTGCCCCTCgaaggagaacacacacaccccaacgcCAACACCCATGgagcctacacacacaccaaccctcaCGGCCACGAGACGGCCGCGCAGAGATACAGCGCCACACGCATCCAAGCCGGATATGAACCTGAGAGcatgGCTGACTATCTGATCAGTGGAGGGACAGGGTACGTGCCTGAAGATGGACTCACGGCTCAGCAGCTCTTCTCTATCGGGGACGGACTCACATACAATGATTTCCTGATTCTTCCTGGTTTCATAGACTTTAACTCGGATGACGTGGACCTGACTTCAGCTCTGACCAGGAAGATCACCCTGAAGACTCCTCTAATCTCGTCTCCTATGGATACAGTCACTGAGTCCTCCATGGCCATCGCTATGGCTCTCATGGGCGGGATCGGGATCATGCACCATAACTGTACTCCAGAGTTCCAAGCCAACGAGGTCCGCTTGGTCAAGAAATTTGAGCAGGGTTTCATCACAGACCCGGTGGTAATGAGCCCTCACCACACGGTGGGAGACGTGTTCGAAGCCAAGGTCCGCCACGGCTTCTCTGGCATCCCCgtcacagagacaggaaagatgGGAAGCAAGCTGGTGGGTATCGTCACCTCCCGAGACATCGACTTCCTTTCCGAGAAAGACCATGACAAACCCCTGGAAGAGGCCATGACAAAGAGGGAAGATTTAGTGGTTGCACCAGCTGGTGTAACACTGAAAGAAGCCAACGATATCCTGCAGCGCAGCAAGAAAGgTAAGCTGCCCATAGTGAATGACAGTGATGAGCTGGTGGCCATCATAGCGAGGACAGACCTGAAGAAGAACAGAGACTACCCTCTGGCCTCTAAAGACTCCAGGAAGCAGCTGTTGTGTGGAGCTGCCATTGGAACCAGAGAGGAGGACAAGTACAGACTGGACCTGCTGATGCAGGCTGGTGTCGACATGGTGGTGCTGGACTCCTCCCAGGGGAACTCTGTCTATCAGATCAACATGATCAACTACATCAAACAGAAATACCCTGAACTACAGGTGGTGGGAGGAAACGTGGTGACTGCAGCACAGGCTAAGAATCTGATAGATGCGGGTGTGGATGCTCTGAGGGTGGGGATGGGCTGTGGCTCCATCTGCATCACCCAGGAAGTGATGGCATGTGGGCGTCCCCAGGGTACATCAGTGTACAAGGTGGCAGAGTATGCCAGGCGTTTCGGTGTGCCTGTCATCGCAGACGGAGGCATCCAGACCGTTGGACACGTGGTCAAAGCTCTCGCTCTCGGGGCatccacagTGATGATGGGGTCATTGCTCGCGGCTACCACGGAGGCCCCGGGGGAGTATTTCTTCTCGGACGGCGTGCGACTAAAGAAGTATCGCGGGATGGGCTCCCTTGACGCCATGGAGAAGAACAGCAGCAGCCAGAAACGCTACTTCAGTGAGGGGGACAAGGTGAAGGTGGCTCAGGGTGTGTCAGGGTCGGTCCAGGATAAAGGCTCCATCCATAAATTTGCCCCCTATCTCATTGCTGGCATACAACATGGCTGCCAAGACATCGGAGCCAAGAGCCTCTGCATACTGCGGTCCATGATGTACTCTGGGGAGCTGAAGTTTGAGAAGAGGACCATGTCAGCTCAGGTTGAGGGGGGAGTACACGGGCTGCACTCTTATGAGAAGCGGCTATACTGAGGGAGGAGCGAGAAGAAGCACACGAGCAGCTCCCAGCGTACCCCCACCAGCAGCCACCAGGCACAACAGATACATGTGACCTACCTATGTGACCTACCTACAACCACTACTCAATTCAACCATCACATAACCTTTTGGCTATACATAAGACCGctgactcctctcttctcctcccacccactatctctctctttctctgtgttgtGTAAGATGCTTTTGAGGGACCATAAAGTCACCTCTGACTTGATTGATGTTATGACATAATCTACAGGGACTAGGGACTAACGTTCAATGGTCACATGTACCTGGGTGATGGCACAGAGCCATCAGGCTGTATAAGGTATGTAGCGCATGTAGTACTGTGAACTACTTTACGTACCCTGGAACTCTTTATACCAGTTTTGGTTGATCATGGTCCTTATGTCTCAGATGTATTTGAATGTACAGTAGTGTTGATGACCATATGGAATAGCCTAGAGGTCTGTTAGTGTGGCTCTACTGTAGAGAGGACCAAAGCCACGGTAGGCATTAGCCTTCAATCAGGGATAACCACAGCGCCTTAAGACTGCACATGGAGTCTATACTGTGGATAGTGCTGGAATCTGTTTTTCATTGGATTATCATcagtttgaagaaaaaaaaagaaagagaaccGCACTTTTTTTCGTGTGAAGTTCACTAAGATTTGGGGTGTGTTTTCATTCATGTTATGTGTGTTTTCTGATGACAGAGTGATTGTACAGTGACTTTGGCCTAGTCTGTGGTGTTAATAATATGATACGATGGATttgagtgcattcggaaagtattcagacaccttcactTTCTCCACATtatgttgcgttacagccttatt

Function

GO: NA

KEGG:

id description
K00088 IMPDH, guaB; IMP dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40675 lncRNA downstream 9598 33973506 ~ 33973779 (-) True G35982
TU40662 lncRNA downstream 12610 33969190 ~ 33970767 (-) True G35969
TU40672 lncRNA downstream 15028 33968057 ~ 33968349 (-) True G35979
TU40661 lncRNA downstream 27909 33954501 ~ 33955468 (-) True G35968
TU40658 lncRNA downstream 40405 33942726 ~ 33942972 (-) True G35966
TU40681 lncRNA upstream 44030 34046312 ~ 34047304 (-) True G35988
TU40727 lncRNA upstream 81623 34083905 ~ 34084325 (-) True G36028
TU40729 lncRNA upstream 83806 34086088 ~ 34086337 (-) True G36030
TU40745 lncRNA upstream 112538 34114820 ~ 34115042 (-) True G36045
TU40750 lncRNA upstream 122975 34125257 ~ 34125468 (-) True G36050
LOC118966666 mRNA downstream 21281 33959328 ~ 33962096 (-) True LOC118966666
XM_021599259.2 mRNA downstream 29442 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA downstream 29442 33944834 ~ 33953935 (-) True rbm28
XM_021599223.2 mRNA downstream 253411 33724849 ~ 33729966 (-) True lrrc4.2
XM_036976052.1 mRNA downstream 1058778 32874916 ~ 32924599 (-) False grm3
XM_036976155.1 mRNA upstream 6998 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
XM_021599348.2 mRNA upstream 22903 34025185 ~ 34040439 (-) True LOC110521650
XM_036976369.1 mRNA upstream 198073 34200355 ~ 34245388 (-) False iqsec3b
XM_036976378.1 mRNA upstream 200197 34202479 ~ 34245388 (-) True iqsec3b
XR_005051566.1 mRNA upstream 294405 34296687 ~ 34302605 (-) True LOC118964492
TU40263 other downstream 115332 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 530964 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 874880 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 1997227 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2538428 31426123 ~ 31444949 (-) True LOC110521048
TU40852 other upstream 275418 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 339280 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1271427 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1438636 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1581010 35583292 ~ 35583608 (-) True G37976

Expression Profile