RNA id: XM_036976155.1


Basic Information

Item Value
RNA id XM_036976155.1
length 4652
RNA type mRNA
GC content 0.52
exon number 10
gene id si:ch1073-390k14.1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34009280 ~ 34018443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaagccttgagacaatcgaCACATGATTGTCTATGTGTGCCATTCacagggtgaatgagcaagacaaaatattttgtGCCTTCGAAACAGGGTATGTAGTGGGTTCCAGGTTCACCGGTTTGTGTcatgaactgcaatgctgctgggtttttcacgctcaacagtttcctgtgtgtatcaagaatggtccatcacccaaaggacacccagccaacttgacacaactgtggtaagcattggagtcaacatgggccagcatccctgtggaatgctttcaaaaTGCTTTTTTGGTGTGTATAGggagtatggacagtatatgaatagaataggtgtggacagcagtagttgtaTAGGATGAGCcaggactagaatacagtatatccatataaagtggataaaacagtatgtaaccatgaataaagggaccagtgttcaatgtctctatgtacatagggcagcagtcacTAAGGTTCAGCCTAGAGTACCGGAAGGTGGCCAGCTAGTAacactgactaaggttcagggcaagTTACTGGGAGGAGGCCAGCTAGTAacactgactaaggttcagggcaagTTACTGGGAGGAGGCCAGCTAGTAACACTGACTAAGGTTAAGGGCAAGTTACTGGGAGGAGGCCAGCTAGTAacactgactaaggttcagggcaagTTACTGGGAGGAGGCCAGCTAGTAACACTGATTAAGGTTCAGGGCAAGTTACTGGGAGGAGGCCAGCTAGTAacactgactaaggttcagggcaagTTACTGGGAGGAGGCCAGCTAGTGGTGACAgataaacagtctgatggcctggagataaaagctgtttatCAGTCATGGCTCGGGttgctgaggtccttgatgatcttcttgaccttcctgtgacaccgggtgctgtagatgtcctggaaggcaggcagtgtgccctgatgatgcgttgggctgaccacaccaccctctggagagccctcatctcttctcctgtcaCATCTTTTTCTCTCTTTGATCTCTTAGGTATACATTCAAAACAGATCTTTATTGATAGTATGTGACGGCAGACAGATGTGTTTAGGCTTATGGCAGATTGGTCCATTCATTGATCTGTCTGttagtgagagacggagagaagccAGCTAATCTCACTGTTCTCTATTGATCACACACTTAGAGACTACATACTTTGTCTAAACACTATTGATCTCCCTCTCGTATAGCATGAGGATCAAGAGAATAAATTAAGGATAAAAGACACTTGGTGGGAGAGGGATGATGATTTTATTTGTCTTTAGTGTGGAGAGGGAAGCTGTGAGTGTTTCTCAGGAGCACCATGAGCGTAGGAAGTGAGACTAATGACTGTAATATTGTAGACTTGGGTGCCCTCTACTGGTCACAATGTTACATTGCATCACATCCGATGTAATTACAAAACAGCGTGGGATTGAGCTTGTGTAACTGGCTATCAGCTGTTGAGTAACTCATTCACGTTGCAGCATACTCGATCCTCTCTGTCCCACTATCACCACTAATTGAAAACTATCGAAAAATGCAAAAGAAATCAACAACCTTTAACATTGTCTTCTCATGGATGATTACGACCTAATCtggatttttggggggtatttggAATTTTAAGAGAGACTGTAGGGAATTCCTCTGTTTTATTGCTTTTCATCACCAGCAATAGACCATGCCTGTATCGGGTGGTGAGGACCCCATGTCCCAGGTTCGTCAGATGCTGAGAGAGTTGCTTGTGGGGAGAGAGAACGCCGAGGGcttcttctgtctgtgtgtgtctgtactgggACACAACGATACACGGACACATTTCTTGCCGCTCATCCAGCTCCTAGCCACCGATCACAACAGGCTTCACACCACCCTCACCTCCATCTATTTGGAATACTTCTCCAAGGATGAGGATGATGAGTTGGCAGTGGCTCTGGCTCTGTCCCTATTAGAGGTCAAAGGGCAACAGCAGACTAATACCAAGCCCCTCTTCCTAGACCCTAAACTCCAGGGTCAAACAGACACCCAGGCTACGGCAACCTACAGACCCCAGAATAGTTCCATTCAGAGTCAGTCAGTTTCTCCTAATGGTAGCTCCAGCCAGCCTCCGCCAGCCCCTCTGCCCACGGGTGCGAGCTACGCCCAGCTAGCAGCAGtaggaggaaggagacagactcAGGCTCAACACCAAGACTCCACATCACCCAGAAGATCATCTGGACATGGCAGCTCTcctcagacagagagtcagagaggccCAACCCAGAcccagaaacagacagacataaagtGGTCTAACGTCACTCAGGATGTGTGCGCCTCTATTGCCACTTTGACATCCAATCTCAACCAAACCAAAGATGACGTCACTGTGGTGGAGTGCAAAGTGGACCAATCTGAGAAGCCAAAGCGCTCAAAGAACCGACGTCAGCGGAGGAAGGGGTATGGCCAGCAGGTGGTAGGTGTGCCTCGATGCCCCTCGGCTCCACCCCCTGTGCTGCTGTGGTTCCGCAGGGACCTGCGTCTCCATGACAACCCAGCTGTGATTGGCTCGTTGGAGGCTGGAGGGCCGGTCATCCCCGTCTTTATCTGGtgcccagaggaggaggagggtcctggGGTAACCGTGGCTATGGGAGGGGCCTGTAAATTCTGGCTGCACCAGGCCCTGTCCTGTCTCAGCTCTGCTCTGGAACACATCGGCAGCCATCTTGTTTTCCTTCGgccagatgaggagagagaggggattggtTCTTCGCTGCTTGCCCTGAGGAGTCTGGTGAGAGAGACGGGGGCTCAGACGGTGCTGGCTAGCGCCCTCTATGAGCCGTGGCTGAGAGAGCGGGACCAGGTAGTGGTGTCAGCGCTGCAGAAAGACAGGGTGGAGGTTAACATGGTCCACTCCTACTGTCTCAGAGACCCTTATACTGTTACTACTGAGGGGGTGGGACTCAGAGGTATTGGTTCTGTATCCCACTTCATGAGTTGCTGTCAGATGAACCCTGGCCCAGGGTTAGGGGTTCCCCTGGACCCCCCCATATcgctcccctcaccctctgtctggcCCAGAGGCTGCCCTCTGGAGGGGCTAGGACTGGCACGAATGCCCTGCAGGAAGGATGGAACCACGATTGACTGGGCAGCTAACATCAGGAGTTCATGGGACTTTAGTGAGGAGGGGGCCCAGTCACGTCTAGAGGCCTTTCTAAAtgatgGTGTGTACAGATATGAGAAGGAATCAGGGCGTGCGGATGCCCCGAACACCAGCTGTCTGTCTCCTTACCTGCACTTTGGCCAGCTGAGTGCTCGCTGGCTGCTGTGGGACACTAAAGGGGCGCGCTGCCGATCCCCCAAGTTCATACGAAAACTGGCCTGGAGGGACCTGGCCTACTGGCAGCTAACATTGTTCCCAGACCTGCCCTGGGAATCACTCAGACCACCATACAAGGCCCTTCGGTGGAGCAATGAGAGGGGTCATCTGAAGGCGTGGCAGAAGGGCAGGACAGGTTATCCTCTAGTAGACGCTGCAATGAGACAGCTGTGGCTGACTGGATGGATGAACAACTATATGAGACACGTAGTGGCTTCTTTCCTCATAGCTTATCTCCATCTACCATGGCAGGAGGGATATCGCTGGTTCCAGgacacCCTTGTGGATGCTGACGTGGCCATAGATGCCATGATGTGGCAGAATGGAGGCATGTGTGGTCTGGACCACTGGAACTTTGTCATGCACCCTGTTGACGCAGCCATGACCTGTGACCCTTACGGAAGCTATGTCAGGAAGTGGTGCCCTGAGCTGGCGGTGCTGCATGATGACCACATACACAAACCCTGGAAGTGCCCAGCCTCCATGCTGCGCCGTGCCGGTGTAGTCCTAGGCCAGTCCTACCCAGAGCGTGTGGTGAcagatctggaggagaggagaagccaGTCTTTGCAGGACGTGGCATTGGTGAGGCGGCGTTTTGGGCAGTACGTGGACCCCTGCTCGGGGTGCGACCTGGTCCCCCTGCCCCCCCGCCTGGTCTCAGAGGCCATGGGTgGAGGTATGGTCAACACAGGTGGGCAGTTCCTCCTGCCTGTTATCACCCGTATGGAGTTCAAGCACCAATCAGACGATCCAGACGCTGCCTTTAACCCCTATAATGCCGTTCTGAAGGGCTACGTGAGCCGCAGGCGGAATGAGACCATCGCCTTCCTGAACCAGACAGACTTCACAGCCAGCGTGATAAAcgagggagcagagaggagggaaagacagGAGCAAgaccagaggaggatggagggactaCCACGCCCCCTTGCAGTTGAACGAAGGGGAAAGAGGACCCCCGCTGCCAAGGACAGGTTCTCCACAGTGCCTGGGGGAGTGGCTACTTCTCACAAATGACCATAAGGGCAGGGGCTAAAGGTTCGATAGAGCCACTGTGGTGCCCAATGGCCTTTCCTCAATTGATTTGCTTAACTTCTGCGTCCTTCCTCACCTACTTTTGAAAATGGTCAAAGGTAAATCAAGGAGACGCGGGGAAGAGAGGGAAcgtggacaaaaatgtgcttgtATCAATTGTCTCTCCTTCATTCATGTGTTGTCAGGCAAATTGTTTACAGTGGATCacaaaaaataaatgtgtaaag

Function

GO: NA

KEGG:

id description
K12119 CRY2; cryptochrome 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40675 lncRNA downstream 35501 33973506 ~ 33973779 (-) True G35982
TU40662 lncRNA downstream 38513 33969190 ~ 33970767 (-) True G35969
TU40672 lncRNA downstream 40931 33968057 ~ 33968349 (-) True G35979
TU40661 lncRNA downstream 53812 33954501 ~ 33955468 (-) True G35968
TU40658 lncRNA downstream 66308 33942726 ~ 33942972 (-) True G35966
TU40681 lncRNA upstream 27869 34046312 ~ 34047304 (-) True G35988
TU40727 lncRNA upstream 65462 34083905 ~ 34084325 (-) True G36028
TU40729 lncRNA upstream 67645 34086088 ~ 34086337 (-) True G36030
TU40745 lncRNA upstream 96377 34114820 ~ 34115042 (-) True G36045
TU40750 lncRNA upstream 106814 34125257 ~ 34125468 (-) True G36050
XM_021599303.2 mRNA downstream 6998 33983377 ~ 34002282 (-) True LOC110521614
LOC118966666 mRNA downstream 47184 33959328 ~ 33962096 (-) True LOC118966666
XM_021599259.2 mRNA downstream 55345 33944834 ~ 33953935 (-) False rbm28
XM_021599268.2 mRNA downstream 55345 33944834 ~ 33953935 (-) True rbm28
XM_021599223.2 mRNA downstream 279314 33724849 ~ 33729966 (-) True lrrc4.2
XM_021599348.2 mRNA upstream 6742 34025185 ~ 34040439 (-) True LOC110521650
XM_036976369.1 mRNA upstream 181912 34200355 ~ 34245388 (-) False iqsec3b
XM_036976378.1 mRNA upstream 184036 34202479 ~ 34245388 (-) True iqsec3b
XR_005051566.1 mRNA upstream 278244 34296687 ~ 34302605 (-) True LOC118964492
XM_036976452.1 mRNA upstream 440985 34459428 ~ 34466711 (-) True LOC110521742
TU40263 other downstream 141235 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 556867 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 900783 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 2023130 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2564331 31426123 ~ 31444949 (-) True LOC110521048
TU40852 other upstream 259257 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 323119 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1255266 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1422475 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1564849 35583292 ~ 35583608 (-) True G37976

Expression Profile