RNA id: XM_036976369.1


Basic Information

Item Value
RNA id XM_036976369.1
length 5629
RNA type mRNA
GC content 0.51
exon number 15
gene id iqsec3b
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34200355 ~ 34245388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAAACTGTCATCAGCAGCAGCAATCAGCAGCACAGCCGTATCAGTGGCCgcaagggagaagaggagaatcTCATCACGGGAAGACGGGAAGGTGTACCTCTACATCTGATCATCATATCTCtttttttcctgtctctctcttgctttttTCCGTTTGAACGGAATATTATCTTCTCTTACACCTGATCATCTCTCACAGAAACAGAATAGGTTTAAAAACAGAAGAGAAGAGTAACGTTACAACGAAGGGAGGGACTAATGGAGGCATAAAAAgcaaaggagaagagaggagaaattTACCTCTCCCCTAGACTACACTCGATAATCTCAATATCGCTCTCCTTTGCGCTATCTCTCTCTGGTCATGGCGTTGCAGGGGACCAGCCTGCTAGAGAACCCGGTCCAGGCAATTCTGTACCTTAGAGAACTGACCACAATAGTTCAGAACCAGCAGAGCCTCATCCAGACACAGCGCCTGCACATTGATGAACTGGACCGGCGCGTGGACGAGCTGCTCGGGGAGAACAGGAATCTGCGCGAGGCAAGAGTAcaacatcattatcatcatcacccGGACTCCAACAGGAACCTTCATCATCCTCAGCACCAACATCCAGACACACAACCTCATGACACCGGGTCTCTGCCTGCCCAGCCTCCGCCTGAGATCCACCCGGACCAAGAAAAGCCGCCTCCACAACCCGCTAATCCGGAGGACATGCAGTTGGTACCGGCCCAGCCGCAGTCAACGAGCCCTCCGCCAAGCGAGGCCGGCCCGGGCAAGGGGGAGGACGGCAGGACCAGCCCGGGCTGCCGCACACTGAATCCCCTGGTTCCCCTAGCTCCCCTCACTCCTACCACTCTCTGCCGCTCGGTGGGTCTTGCCAATCAATCAGAGAGTCAGACAATACTACATCAGTTCTGCTGTCCTGCCCCAGAGGCTGCTCCCACTGGCTCCTCCAGTGATGGGCAGCTGCTGAGTCTGGAGGGCGGGAATTCCTCCAGCAGACAGGAAAGAGAGGGGTCGGGGGGTGTGGCTCGGAGAGAAGGACCCAGCGACTATGAACTTGCCCTGGAGAACAAGACCAAACAGATAGAGGAGTTGGAACAGAGGTACGGAGGCCACCTGGTGTCGCGGCGCGCTGCGTGTTGTATTCAGATGGCGTTCCGTCAGTACCAGCTCAGTAAGAACTTCCAGAAGATCTGTAACTCTCTGTCAGAGAGCAAGTTGCCACGCCGCATCTCCCTGCGCCGGCCCAACCCCAGCCGGAACCAAAAATCCACCCAGCGACACAGCTTCCTGTTAGAGACCGGGAGACCCCCCCTGCGCCCCAAAACACCCCCACCACCCCCTTCACGCTCCACctccctgcccccctcctccGCCACGGGCCCCGGGCCCTCGCTCACACAGCTGGAGGACTGCTTCTCAGAGCAGGTACGCTCACTGGCCCATTCGATAGACGAGGCCCTGCGTGGGTGGAGCCTGTCAGAGGGGGTTGAGGGGGGGACAGGGGGGCTGCTGATGGACCCCGGGGCATTTCGGATGGCTGCACAGAGTGCCTGCATGCCTCGCAGTGCCAGCTCCCTGCTCATGGCCTTCAGAGACGTCACCGTTCACATCGACACCAACAACTACACTGTCTCCACGActaccacctccacaaccactgCTACCCACGGCAACACAGGGGCAGGAGCGGGAGGGAGCATGCAAGTCTCagtggatgggggagagaggggaggaggggtgaggactCAATCAACAACCTCCCAGCTAAGGGGTGAGGCGGAGTTTCCTGCCCCCCCTCCCAGTGAGTTGTTGGAGGGAGGAGGGTCGAGAAGGGGGTCAACTGTGacagggcaggggggagagatggggaggcagAGTGGCTCAGAGAGACTCAGTTCCACCTCCACCTCTGCCTCAGCCCAGTCTAACCAGTATACCACTCAGTCCTCCTATTCCCAGTACCCCCAGTACTCCACATACCCCAAGGCTCATCACCCCCAGTCCCAGCCAGGGTCCCAGTCAACCAGGGACCCCACCTCTGAGGCTCTCCAGGCCCTGGTCCTCTCTCTGCCTAGAGACCGCTGCCAGGACCCTACCTCCTGCCGATCCCCCACACTCTCCACTGATACGCATCGCAAACGACTCTATCGCATTGGACTGAACCTCTTCAACGtGAACCCAGAGCGAGGCATCCACTTCCTGATCACCCGTGGTTTTGTCCCAGACACGCCCATGGGCGTGGCCCACTTCCTGCTACAGAGGAAGGGCCTGAGCCGACAGATGATTGGAGAGTTCTTGGGGAACAGTAAGCTACTCTTCAACAGAGATGTCCTGGActgtgtgGTGGATGAGATGGACTTCTCTGGGATGGAGCTGGATGAGGCTCTGAGGAAGTTCCAGTCTCACATCAGAGTCCAGGGAGAGGCCCAGAAGGTGGAGAGACTCATTGAAGCTTTCAGtcaGAGGTATTGTATGTGTAATCCCGAGGTGGTGCAGCAGTTCCATAACCCAGACACCATTTTCATCCTGGCCTTTGCTGTGGTCCTCCTCAACACTGATATGTATTCCCCTAACATCAAACCTCAACGCAAGATGGGCCTTGACGACTTCATACGTAACCTACGAGGAGTGGATGACGGGGCAGACATCCCCAGGGAGATGGTGACCGGGATCTATGAGAGGACCCAGCAGAGAGAGCTACGCTCCAACGAAGACCACGTCACCTACGTCAGCCGTGTGGAACAGTCCATACTGGGCATGAAGACGATCCTGTCTGTGCCCCACCGTAGGCTGGTCTGCTGCTGTCGTTTGTTTGAGGTGGCAGACTTCAACAAACCTCTGAAACAGAAACTGGCGAACACCCAAAGAGAGGTGTTCCTTTTCAACGACCTCATACTGATCCTGAAGCTGTGTCCAAAGAAGAAGACTTCTGCTTCCTACACCTTCTGTAAAGCCATGGGTCTACTGGGCATGCAGTTTCACCTCTTCAGCAATGAATactatGCTCATGGCATCACCATGTTGAGTCCGTTCTCTTCAGAGAAGAAGCAGCTGGTGAGTTTCTGCTCCCCCAGCGGAGAGGAGCTCAGGAATTTCACAGAGGAGCTACGTGAGTCCATCACTGAGGTCAACGAGATGGAGCAGATACACATCCaatGGGAGctggagagagaacagggggtgCAGACTCACACTCCCCACACCAATGGAGGACAGATGGACACACTCAGTCGACACACAGGATCACCCACTGCCCAGCAAGACCTGTATGACAAGACTGGCAACAACACTGTGGAGGTGTCAATTCACAATAGGCTGCTGCAGACCTACCACATGACCCAGCCCAGCCCTGATAGGCTGCTCCAGACCTACCATGTGACCAGTCCTGACTCCACCCAACTGGCTCTGGCAGCACCAGCCATGCTAAGTGCCACCCACCCCGGAGAGTTCCGCCCAGACACTCTCATTCAATGCCAGCAGATCGTCAAGGTGATCGTCATGGACCAGAGCGGCCGCGGGAGAATGGAAGCTTTCCTCAACCAAGGAAGCCCCGCCTCCCACCACCGCCTCATCCAATCAGCGATGTCCACGCCAGTACGGGTCAGAGAGGGATCTGAgccccctctgcctccccctcctcccccctacaACCACCCCCACCAGTACTGTCCCCCCGActccccctgccctctctcacacaccctgcctcacccCCTCCGCAGACGCAACTCTAGTGGCTCCCGCAGCCTCGTCTGACATATGACCCCCTCACCCTACCACACCTTATCATGCGCCCTCTGACCTTTTGTTAAACGGTCATGTACTGTATTggtgaaacacacacaacacaaacactcatAGACAAAGATAGAGAAAAGGTGAGacgaggaaggaaggaagagaaagagggcgGGAAGGAAGTCGTCTGAGAGAAAGGGAATAAGCCGATAAAGCGAGTGGGAGATAATAGAGAGGATTCAAATCAATATAAAATCAAAGTCATCTAATGATTTCATGTGTATTTTTGAATAGGATGTCATTTTGACAACATTTCTAAACAGAGATTTTCTAATCGTACAGCTCTTGTGACACAGTGTCATCTGTACATATCTATATCTGTTCCTGACTTTAGAAAGAACAATTTAGGATACAACCTCTCACCACCTGATCCCCGACTCTAACCCTGCCCTGATGTCACACAGCTGATGGAACACACAGATCTCCTCCATGTGTTGAGCTGTCTGGACATGGAGACATGTCAcctcaatgacatcatcaacatcatctaGGGTTTTAGCCCTCCTCTTTAGCACACTGTGTTTTGGTGATGTGTGGTAAAATATGATAATCAGATGCTAATAATACTTTTGATCGTGAAGAAGTGAGTATGTCAGATTTGCCGGGAGGGAAGACTGTTTCTCCTGACTCCTGGCTTACAGATGATTACAATCTGTATTTCTATTCGTAATGTCAGACTTCTACCCTGATTAACATAtctgcgtgtgcatgtgtgtttgagattATAAGGGTCTGCCAGTGTATGTGCGTGTGaaagggtgtgtctgtgtgtgcttgttgCATGTGTGTGCGAATACCATTGTTCTATTCTCTGAGGTTTTGCTACACTGGTCCAAGCCTCACACTCAGGAAGATACCAGTACTGACGACAAACTGTTCAACATTCTAACTTATTGTTTGATCAGTAATAACATGAACATTGTATGTTATTGACCAGTCATGTTCTAACATTCTATCTAATTTGTACTTTTGAATATTCAATCTCACTTTCTGAATCCCTAAAGGGTTAACTATTACCCATTCTCACATGATTAACCTGTTCTCCACTGGAATGCATGTAggaatgtatatacacacacagtacacacacatgcacacacagagcaTTAAACCACAGAATTACTTAAGTATGTTTATTTATCAGAATATTGAATATgtttcattattattataatagtGTTGTTACATCTcttctttccctttccctctctctgaggGCTGTGACACGTGGTGACCCACTGAGGCTGATCTTCTTCGTGTTGCACCATATTATTAGAGTATATCGGAATACTGAACATGTGCACAGTATATaggtggtatatatatatatatatatatatatagtaaaagGAATGGACGGACTGCCGatgtgtgtatttatgtatttGTACAGAGGTGGAAATCTATTTGTTTTTCAGATTATGAGGGCAACAGTGTTACCCACTGTTACcacaagagacacacacacagatgatacATTATCATAATTAGAGCTCTGTGTAAAGGGCTATACTGTAGCTGTGATCACACTAGCGTTAGCATTAACTAGATGGTTTAGTGGAAAACAAGCAGGAGTCATAGTAGACATTTTAGCATGTTCTAAAGCCCTAACATATCACCTTAACACTGAGTTTGGCTCGCCTGTCCTGCATCCATCTTGGAGATGTCTTACACTGTTGAAGAGAGCACCTGTGCACCGTCACATTAAGTATTTACTAAGATATCATGTTTATAACAATTACAGTGTTTACTAATGGAATATTTCTAAAGATTTATGTTTGAAGAGAATTACATAATAAAGTAGTTTGTACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40758 lncRNA downstream 60734 34137755 ~ 34139621 (-) True G36055
TU40750 lncRNA downstream 74887 34125257 ~ 34125468 (-) True G36050
TU40745 lncRNA downstream 85313 34114820 ~ 34115042 (-) True G36045
TU40729 lncRNA downstream 114018 34086088 ~ 34086337 (-) True G36030
TU40727 lncRNA downstream 116030 34083905 ~ 34084325 (-) True G36028
TU40914 lncRNA upstream 103725 34349113 ~ 34447603 (-) True G36202
TU40922 lncRNA upstream 122762 34368150 ~ 34451770 (-) True G36209
TU41202 lncRNA upstream 224438 34469826 ~ 34471046 (-) True G36438
TU41236 lncRNA upstream 275918 34521306 ~ 34521569 (-) True G36471
TU41264 lncRNA upstream 307290 34552678 ~ 34554757 (-) True G36491
XM_021599348.2 mRNA downstream 159916 34025185 ~ 34040439 (-) True LOC110521650
XM_036976155.1 mRNA downstream 181912 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
XM_021599303.2 mRNA downstream 198073 33983377 ~ 34002282 (-) True LOC110521614
LOC118966666 mRNA downstream 238259 33959328 ~ 33962096 (-) True LOC118966666
XM_021599259.2 mRNA downstream 246420 33944834 ~ 33953935 (-) False rbm28
XR_005051566.1 mRNA upstream 51299 34296687 ~ 34302605 (-) True LOC118964492
XM_036976452.1 mRNA upstream 214040 34459428 ~ 34466711 (-) True LOC110521742
XM_021599612.2 mRNA upstream 228580 34473968 ~ 34490179 (-) False LOC110521764
XM_021599629.2 mRNA upstream 228580 34473968 ~ 34490179 (-) False LOC110521764
XM_021599638.2 mRNA upstream 228580 34473968 ~ 34490179 (-) False LOC110521764
TU40263 other downstream 332310 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 747942 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1091858 33107119 ~ 33108497 (-) True G35075
TU37804 other downstream 2214205 31984771 ~ 31986150 (-) False G33386
TU37405 other downstream 2755406 31426123 ~ 31444949 (-) True LOC110521048
TU40852 other upstream 32312 34277700 ~ 34362736 (-) True G36141
TU40907 other upstream 96174 34341562 ~ 34381232 (-) True G36196
TU42180 other upstream 1028321 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 1195530 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1337904 35583292 ~ 35583608 (-) True G37976

Expression Profile