RNA id: XM_036976452.1


Basic Information

Item Value
RNA id XM_036976452.1
length 1436
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110521742
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34459428 ~ 34466711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTAGGGGCGTGGGACACAGACAAagaacagacacacactaacacgaggagggagaagaggactTTTCTGTACACAGTGGATTTTACACTTGTGGAATATAATTCATATTTGGAACTTTGCTGGAGGagCCCGGCCCCGGATGGAAAGGGTTGTCGCTGGCTACTCCGAGGTCTTAGCTCCCAGCCATGGGGGGCTGCCAGAGTCACCCCTCTGCTGCGGATACACAAATAGTACCCCAGCCCTCTGACGTCAACAAACTGGGAGATAATAACAAtgagctggtgttggaggagcGTCCCTATCTGCAGCAGCAGTATGTCTCTGAGAGGATCACACACACCGACATGACCGCCCTCACCGCCCTGCCACCCGGACTGGACCAGGCTGAGTGGCTCGCCAGCAACacgGTAGCGTTCTTTAAGCATATTAACCTGTTCTCCAGTACCCTTTCTGAGTTATGTACTCCTACCACCTGTCCTACAGCCTGCGGACCAAATAACATagtGTATACATGGACAGACGATCAGGGGAAGAAGTTGAGGTGTTCCGCTCCTCTCTACTTTGACTATACCATGTCCTACATCCAAGACCTACTGACAGATGAAGACGTCTTCCCCACCAGAGCAGGGTCAGTGTTCCCAGCAGGCTTTATTTTCTTGGTCAAGAAGGTGTTTCTGCTGTTGTTCCGTGTTCTGGCTCATATCTACTGGAGTCACTACAGAGAGGCCCTGGTTCTGGGACTACACCCCCACCTCAACACGTTGTTCATACACCTCACACACTTCAGCCTTCAACACGACCTGCTGGAAGCAGAACACACACAACCTCTACAGGACCTGATCATTGCTCTGGGACAGTACAGcctcacctgacacacacacacaaatgtaactTCACAGatgtacacgcacgcacgcacgcatgtacacatacacacacagcttcaATGAATTTAGAGAGACAGACTCAGCGACTCTGTTGTATAAACTGTGAGATAACCTTTTaatgcagtgggctaaatcagggtgaCTTGGTAGTCTTAAGAAAatgtactttgaaacaaaagtatacaacTCACACATGggcttaaaaaaaagaagacacctgtaccatgtcagatatagagttgaaatgtattacatttttaatTTACATCCCAATAGactttatatactgtacatcacagaagactgaaatataacgaaactgtttgacatagattttctgcattttttaaaaatcatgtttattaataataaaaaaagatgAATAACATTCTACCAATGAGGCCACTAGGTtgtttgactgcaggaaagggttaTGTAAGAAGAGGATGTGTATTGCTCTTTATGCTTTTGCATGTGATATGTATAATAGATAATATATGTTATGAAGATGATGTTCTTGTATGTTATTAAACTGAGGTCAAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40922 lncRNA downstream 7658 34368150 ~ 34451770 (-) True G36209
TU40914 lncRNA downstream 11825 34349113 ~ 34447603 (-) True G36202
TU40758 lncRNA downstream 319807 34137755 ~ 34139621 (-) True G36055
TU40750 lncRNA downstream 333960 34125257 ~ 34125468 (-) True G36050
TU40745 lncRNA downstream 344386 34114820 ~ 34115042 (-) True G36045
TU41202 lncRNA upstream 3115 34469826 ~ 34471046 (-) True G36438
TU41236 lncRNA upstream 54595 34521306 ~ 34521569 (-) True G36471
TU41264 lncRNA upstream 85967 34552678 ~ 34554757 (-) True G36491
TU41366 lncRNA upstream 232088 34698799 ~ 34703817 (-) True G36579
TU41372 lncRNA upstream 239189 34705900 ~ 34706163 (-) True G36585
XR_005051566.1 mRNA downstream 156823 34296687 ~ 34302605 (-) True LOC118964492
XM_036976369.1 mRNA downstream 214040 34200355 ~ 34245388 (-) False iqsec3b
XM_036976378.1 mRNA downstream 214040 34202479 ~ 34245388 (-) True iqsec3b
XM_021599348.2 mRNA downstream 418989 34025185 ~ 34040439 (-) True LOC110521650
XM_036976155.1 mRNA downstream 440985 34009280 ~ 34018443 (-) True si:ch1073-390k14.1
XM_021599612.2 mRNA upstream 7257 34473968 ~ 34490179 (-) False LOC110521764
XM_021599629.2 mRNA upstream 7257 34473968 ~ 34490179 (-) False LOC110521764
XM_021599638.2 mRNA upstream 7257 34473968 ~ 34490179 (-) False LOC110521764
XM_021599669.2 mRNA upstream 7257 34473968 ~ 34490179 (-) False LOC110521764
XM_021599676.2 mRNA upstream 7257 34473968 ~ 34490179 (-) False LOC110521764
TU40907 other downstream 78196 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 96692 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 591383 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1007015 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1350931 33107119 ~ 33108497 (-) True G35075
TU42180 other upstream 806998 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 974207 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1116581 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 1254729 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1903383 36370094 ~ 36409019 (-) True LOC110522187

Expression Profile