RNA id: XM_021599612.2


Basic Information

Item Value
RNA id XM_021599612.2
length 5964
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110521764
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34473968 ~ 34490179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGGACATACATATGTATCTGTATAGCATTATCTCTAGGCTAACAGTTACAGATTTGGATAACGTCTGCTTGTCAATTTTGGAAGTATCCTTCTGACTGTGTGACCCAGTTAACATTTGTACTAATCTCCTATTGCCAATAATCCGTTAGGGCGGGGGCATACATATAGCAGTGCGAAAGCTATGGTTTAATGGTGCCACCCATATTTTGAGGAATTGTAATATTCAGGACAATCTCTACTCTTTACCACAACGATAAACCACAAGTGCCCGTAGCTACCTTTTAATTTTGCGCGTTCTCGTAACAGTGTCCgccattttgattaaaaaatatGACAGCATCCTTGCCTGTCTTTCTGCAATCTTGAGGGTAAAAGCGACAATTAATTTACTGGCGCTGGGATTGATTGTACTATACACGGGTGGAAGGGTCAGGCAGCCTCTGGTGAGCTGTCAAAGAAACACTCGCCAGATTACTGACAGATTTGGTTGATGGGGCGTGCAGCTCCAGTTGACTGGTTTGGAATATAAACAAACTGCTCAACCAGCTACTTTAGCAGACTGACACTGACGCCCTGGAGCTAAATGACAAGGTTTAATGtgcttcctctgtaaactggtGGGGGGTGTATCTGGCTGTGTGTAATCGTCCATGCAGATGACCATTCCTTCCTGGGTCTATGAGACAAATGACTGAAGAGGTCTGACCAAGGACACACATTACTTTGGTAACCCCCCCATTCAAGCCCTCTCCTCGCATCCTTCTTGAGTAAGACCGTGGGGATCGAACCTCATCACACTCCAGACCAAGCAGGAAATGTAAAGTTGCAAAACATTTGATACACAGTTGGTGAGGATGACTTTCTATTCACTCTTTCTCCTTGCAGCTGCAGCCATGTTCTGGAAGTTTGACCTGCACATGTCGTCCCAGCTGGAGGCCCTGCTGGAGAAGGATGATGTCACACTCACTGAGCtcatggaggaggaggacgtACTACAGGAGTGCAAGGCCCAGAACCGCAGGCTGCTTGTCTTCCTGTCCCAGGACACCTGCATGCAAGAGCTGCTGCACCTCATCACCACAGAGCCCCCTGCTGGCCTGGAAGAAACAAGACGTTTTAAgcacCCTAACATAGCGTGTGAGCTGCTGACGAGTGATGTGGGGGTGATAAATGATAAACTGGGTGGAGAGAAGCCCCTGCTGGATACCCTGTACTCTTTCCTGGAGCAGCCCCCTCCCCTCAACCCCCTTCTTGCGTCCTTCTTCAGCAAGACCATCGGAAACCTCATCACACGCAAGACCGAACAGGTGATCTCCTTTCTGCGGGGAAAGGAGGGTTTCCTGGGTCTGGTCCTGAATCACATCAACACATCAGCCATGATGGACCTCCTGCTACGCCTCATCAGTTGTGTAGAGCCTGCTCCTCTCAGACATGACACGCTCAatTGGTTAAATGAAGAGCAGCTGGCCCAGAGGCTTATAGAGCTCATCCACCCTGGGAAAGATGAGGAGaaacAGTCAAATGCATCCCAGACTGTGTGTGACATCATCCGTCTCAGCAGAGACCAGGCCAATCAGCTCCAAGAGAACTCTGAGGCTGACCCTCTGCTTGCCGTGCTGGAGTcGCAGGAGTGTGTGGGTCAGCTGCTGGACAACATGTTtgtgggagagaggacagagagctgtATCATCTgtggaactcaaatccttctaaCCTTACTGGAAATCAGGAGGCCAGGggtgGAGGGTATGTTGGATGTGTGTGTTCAGGGACATGAGAggtgtgtcaacagtagcatccTGCAGGCCATCCAACCCCACCTCACACACTACCACCAACTACTGCTGGATCCGCCCAGGgtgaCCCCCATGCTTACCAGTCTAGGTGTGTTGGAGGTGCCATTGGGTAACTGTCGTCTCCATGTGGCCAGACTGATGGCCTCTCTGCTACAGACCACTAACACCAGTTATTACATTTGTTGTAACAACACCATTTATAACAACACCGTCACACTGGAGCTCTGCAGACTCAACACCATAAACATTCTactgGACCTGTTCTTTAAGTACACCTGGAACAACTTCCTGCACTTCCAAGTGGAGCTGTGTGTGGCAGCCATCCTCAGCCACTCTGCCCAGGAGCAGAGACCCCTGGTTACCCAGGAAAATCCCAGGCTTCAGCAGGTGCCCCAGGAGAAGCAGGCCTCGCCTGGCCCCACACTCCCACTGCCCTCTGTTCCTCCCGACATCTTCACACACAACCCACTGGTGACCCAtTTGTTTCAGGACTGTCGTCTGGTTCCGAGGATATTGGAGGCTTGGGAGGAGAATGATAAGATGCAGGAGGAGGGGGGCATGAGGAGAGGCTACATGGGTCACCTGACTAGGATCGCCAACACTGTAGTCTGTAGCATGGAGAAAGGACCAGTACACAGCCAGATCAGCAGCCTTATTACAGAGCTGCTTGTGGATTGCAAGGGGCGCTGGGAGACCTTTGTAGACCAGGCCCTGACAGAGATCAACAGGAAGAACACTGTAGACctgGTGTCTCACAACCTGCGCTCCTCCAGTGAAGATGATGATCGACAGAGTCCCTTCCCCAAAGAGCTGTCACTgcaacaaACATTCTCAGACTACCAGATCCAGCAGATCACTGCTAACTTTGTGGATCAGTTTGGCTTCAATGACGACGAGTTCTCAGAACACGGCGACAACATCAATGCCACCTTTGACCGGATCGCAGAGATTAACTTCAACGTGGACACAGAGGACACTGCTAAGACTGCAGCATTTGAGGCCTGCACTAAGGAGAAGATCCAGTCGTTTGATGACAACGAAGAGGAAGAtatctgggaggagagagagatcaactaTACTACACACACTAAGTCTAGGACCagGTTTGGGGGGTCACGGACGTCTGTTGGAGCGGCTCAGAGTGATGGGGTGAGCGATACTGCTGGTAGCTCAACAGGTTCTGAAACGGAGGAGTGGGAGGTGCCTATTGAGGTCACAGGTCAGACAGAACACAGCAAGAACATCAGCCAGACTGAGAACATCAGCCAGACTGAGACTGCACAGAGCCCTGGCTGGGCGGCTAGTTTCGGGGAGGTGAACTCTAAGGCCCCCTCTCCTGGAGTGGGCATGGATCCATGGGCTAACCCCACCCCCAAGTCTGGAGTGGGCGTAGACCTATGGGGTAGCCCTGCCCCCACACCTGGAGTGGGCTTAGACCCGTGGGGTAGCCCCGCCTCTAAATCAGGAGTGGGCCTAGACCCATGGGGTAGCCCCAACCCCAAGTCCGAAGTGGGCGTCGACTCATGGGACAGCCCTGCCCCCAAGTCAGAAGTGGGCGTGGATGCATGGGGCAGCCCCGCCCCCCAACCCATAACTGCAGAGAAGGGCTGGGCCAAGTTCACTGACTTTCAGCCCTTCTGCTGttcAGAGACAGGTCCGAGGTGCACTTCTCCAGTAGACTCCGAGATCTGTGGGTCAGACAAAACAAAACCCAGCCAAGACAAGAACTcttgtgtgtggagtgtgtgtgtggcgagGAAGGCTCCCCTGGTAGCATCAGACAGCTCTTCATCAGGAGGCTCAGAAAGTGATGAAGAGGACAAGACTGAATCTGTTACTATGGAGAAGGTATCCAAGGAAATGGTCACTACAGAGACCGTTGTCACAACCGCCGGAAGGGAGACCATCAAACTTAGGATGGACGCCAACAACGAGAGAGCTGTcttcaccagTGAGGCTgacatgagagagaaagagaagatgaaggagaaagagagggtgatggGTGGAGGAGACCCTCTCAATGCCACCGCTGCTCCCCTCAAAATTCGGCCTGCCACCATCACAAAAGACACACCATCCTTGGCAAACGGACCGGCCTAGTACTACGGTACcacgacacacacatacacaccacttCCCAACAACACTCCATGCCATGCAACGTCTTGTATCGTGAGCAGTGCTGCCCTGTCATAGGTCTGTGTCTAGGACATCTACGGGGGCTGAGAGAGTCAAAAAGCAGAAGAGAAAAGCCATTCCGGAAGCCAATCAACAGCTCCTAAACACAGCAGTTTATGAACAGATTCATGTGATGTTTGTCCCTGCCCTACTGCTGTAGTCTCTCCTAGACACCTATCACCACACtgcgacgtgtgtgtgtgtgtgtgtgtgagatccaGCTTTATGTAGTCTTGTTAGTTCTTGGCTCAGAccgcttttttttttacactttaaGTAGAGAAGATGCTCCATTCCCGCTGTAGTCACATCATCAGCGCAGAGTAGTCTGAGGAGGGGAATGAGTAGTCAGTACTGACTGTAAGATCTTCAAGGACAAAATGTGttcctagttttttttttttttttgactcaatCATTTCAGCATAGAAAATCCAGCCTGATTATGAAAATtctccactatctctctctgtgtggactATTccgtctgttctccctctctgtgtggacTATTccgtctgttctccctctctgtgtggacTATTccgtctgttctccctctctgtgtggacTATTACAGGTAGTGAAATATTGATTCTGTCTGTTCTTTCTCTTTGTGTGGGAGATTTGGAATATATATTCTCAGGTTAAAAGAGCAGTTCTGTGGATGTGATGAAAGCACACATGTGTGACGTCACACACAGCatgagtacacacacatacagtgtgattattcacacacacacacaaagcttgaGGCATACACACTCCACTGTATGAgtgtatacacacaaacacagagtttGCGCAGACAAGCACTCACACCCTTCCATATCACCCCTCCACAGAGCTGTGTAAATGTAATATTGTGACCTTTGAACCTTTTATTAGGTTGTGGTATAATGTAAACGTATTATAATgtaaacagtatatatatataaacacgtATCTATTTTTGGTATCAATTCAGATGTATCGGAAAGCGGATGTTTAGcaggttgctgtgtgtgtgtgtgtgtgcgtgtgcgtgtatgtgtgtttatagtggTGAAATGAGGCAATAATGACATCTGTGTTGTTATGGTTTTTACCCCAGCATCAGACCCTGATACCCTGCTACATGCTTcctcctgggtgtgtgtgtgggtacatgTATGTATATGTTTAATGTATTGGAAATGTCTTCCATATCCAATTCCTCATGCTATATCATCTTATCAGTATCTAAAGcggtctctctcccttctctcattTAGAGCATGTCATTCAGGTATGACTTCGTGAAGTTAGTTTCTGTTGTTGTGTGGTTTTATGTTTATGCACTTTGTGATGGTGGTCAGAACCATCAAGGTATTTTACTCACAGCTGAGGAAGAGGTTTGACTTAAAGGAATCAGTGAGTTATTACAAAATCTTAATAATATTTGTATGTGATATGACGATTTGATCCACCTATTGTGATGCCAAAGTGGGCTAGTGACTAATGAAATTGGCTAGAtttgggacagggagagggatcCACCCTGATAAAGCTAACCAGAGTTGTGTACAGAGTTACGTCATACCTtcaccccaacaccacacactgcatctgacccatacaaaaccacacactgcatctgacccatacaaaaccacacactgcatctgacccatacaaaaccacacactgcatctgacccatataacaccacacactgcatctgactcataccacaccacacactgcatctgacTCATACCACACACGGCATCTGACCCATACAACACCACACACGGCATCTGACCCATACAAAaccacacactgcatctgacccatacaacaccacacactgcatctgacCCATACAAAACCACACACGGCATCTGACCCAtataacaccacacactgcatctgacCCATACAACACCACACACTGCACCTGACCCATaccacacactgcatctgacCCACACTGCACCTGACCCATACAACACCACACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41202 lncRNA downstream 2922 34469826 ~ 34471046 (-) True G36438
TU40922 lncRNA downstream 22198 34368150 ~ 34451770 (-) True G36209
TU40914 lncRNA downstream 26365 34349113 ~ 34447603 (-) True G36202
TU40758 lncRNA downstream 334347 34137755 ~ 34139621 (-) True G36055
TU40750 lncRNA downstream 348500 34125257 ~ 34125468 (-) True G36050
TU41236 lncRNA upstream 31127 34521306 ~ 34521569 (-) True G36471
TU41264 lncRNA upstream 62499 34552678 ~ 34554757 (-) True G36491
TU41366 lncRNA upstream 208620 34698799 ~ 34703817 (-) True G36579
TU41372 lncRNA upstream 215721 34705900 ~ 34706163 (-) True G36585
TU41377 lncRNA upstream 223026 34713205 ~ 34808214 (-) False G36588
XM_036976452.1 mRNA downstream 7257 34459428 ~ 34466711 (-) True LOC110521742
XR_005051566.1 mRNA downstream 171363 34296687 ~ 34302605 (-) True LOC118964492
XM_036976369.1 mRNA downstream 228580 34200355 ~ 34245388 (-) False iqsec3b
XM_036976378.1 mRNA downstream 228580 34202479 ~ 34245388 (-) True iqsec3b
XM_021599348.2 mRNA downstream 433529 34025185 ~ 34040439 (-) True LOC110521650
XM_036986954.1 mRNA upstream 157206 34647385 ~ 34653826 (-) False cpt1
XM_036984421.1 mRNA upstream 157206 34647385 ~ 34658904 (-) False cpt1
XM_036985287.1 mRNA upstream 157206 34647385 ~ 34658904 (-) False cpt1
XM_036985693.1 mRNA upstream 157206 34647385 ~ 34658904 (-) False cpt1
XM_036986625.1 mRNA upstream 157206 34647385 ~ 34658904 (-) False cpt1
TU40907 other downstream 92736 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 111232 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 605923 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1021555 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1365471 33107119 ~ 33108497 (-) True G35075
TU42180 other upstream 783530 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 950739 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 1093113 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 1231261 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1879915 36370094 ~ 36409019 (-) True LOC110522187

Expression Profile