RNA id: XM_036984421.1


Basic Information

Item Value
RNA id XM_036984421.1
length 3790
RNA type mRNA
GC content 0.48
exon number 19
gene id cpt1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34647385 ~ 34660153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATAGAAACACAATGAACTCTAGATATTAATTCAGTACATGAAAGCTTGTGTGCACTACATCATTAGTGTGCACTACATCATTACTGTGCACTACATCATCACATACTGATTTTTAACAGAAACatgtcagtttggtggaaacaccactggtggggCAATTCAGACATTTTCTTTATGCAGAATTTGGAGTATCCGTGTGTGAAAATCAGTTGCCAATTGGATTGTTTACTCTTTTGGGAGGTTTACTTACTtctaagcactttgtgacaaatgTATTTGTGATATAGAGGTTAAAGGAGAATTAACTGCTTGGTTGACTGCCTAAAGCTTAAAGCCTGTCAAACCATAAAAACCAGTGTGTCCACAGACGTAGTGATAGAAAAATGGAACATGGTGGGTTTTACGCAACAAAGCAACGATAGACACACTGTTCACAGAGAGATGAAACTCACCTCTAAAGTTGCCTCATAACTATGAATTATTAACCATTTGTCACCGGGTACCACGGCCAAAACGTAATATATACGTAAATAGATTGATGAATAAACATCAGGTGTTTCTAGTAGTACTCTGTAGGGGTTTGAATGCTATGTGGTCAGCAGGCACACGAGGATACAGTCTAGCTCTAGATGGTGTCCAGTTGCAGAAAGGAAAGGGGGTAGAATTTTGCTCCCAGTACCTGAGGAAAGCCGCTTCAAGGGCATAGGAGTCACAGACAGAGCACAGAGGCAGCACATACACAGAGAGCTCAGCTCTGGTCCAGAGGAATTCCACTGTGAGAAACCAAAGTCACTGTCTTCTTCTGTTTCACTTCAGCCAAGCTTGAATTGAATCGATTTTCAAGGGTCTTCGACGTCACCGGGATGGCAGAGGCACATCAGGCAGTTGGCTTCCAGTTCACCGTAACCCCAGACGGCATCGACCTCCACCTGAGCCGCGAGGTACTCAAACACATCTACCTGTCGGGAGTGACGTCATGGACAAAGCGCGCCATAAGATTTAAAAATGGGATATTGACAGGGGTCTACCCTGCCAGCCCATCCAGTTTGCTGATCGTTGTGATAGCCATAATGAGCACCATATATGCCAGGATAGACCCATCACTGGGAATGATAGACACCATCAAGAGGACCATGTCTGTCAGTGGCTACATGACAGTGCAGACCCAGACAGTGCTGAGTGCCATCCTGTTTTCCACAGGCCTGTGGCTCTCTCTCATCCTCATGCTGAGGTACATTctcaaggcccttctctcctacCATGCCTGGATCTTTGAGTCCCACGGCAAAATTAGCTTCTGCACCAAACTCTGGCTGAGTCTGGTGAAGATGCTCTCTGGGCGCAGACCTCTCCTCTATAGCTTCCAGACCTCCCTACCCAGACTACCTGTGCCTAGCGTGGATGACACCATAAccaggTACCTGGAGTCAGTGCGCCCCCTGCTGGATGATGAGCAGTACAACCAGATGGAGGTGGTGGCCAATGACTTCAAGAAGGACCAGGCACCCAAACTCCAGAAATACCTCATCCTCAAATCCTGGTGGGCTACTAACTATGTGAGTGATTGGTGGGAGGAGTACATCTACCTTAGAGGCAGGAGTCCCATCATGGTCAACAGTAACTTCTACTCCATGGATCTGCTGTACGTgactcccacacacagacaggcagctcGGGCAGGGAATGTTGTTCACGCTATGCTGCAGTACCGCCGCAAACTAGAGAGAGGAGAACATGCACCGTTGAGGGCTCTGGGGGTGGTGCCCATGTGTTCTTATCAGATGGAGAGGATGTTCAACACCACACGTATCCCTGGTATAGAGACAGACTTCGTTCAGCACCTGAGTGACCAGAAGCACCTGGTGGTGTACCATAAGGGCCGCTTCTTTAAGGTGTGGCTGTACTACGGGGGGCGTCACCTCTGGCCCTCTGAGCTGGAGACTCAGTTCCAGAGGATCCTCGATGACACCACCAAGCCACAGCCTGGGGAACTCAAACTGGCTGCCCTCACAGCCGGCAACAGAGTTCCGTGGGCGCGGGCTCGTCTGAAGTACTTCAGCCAGGGTGTTAACAAAGCCTCTCTGGAGGCCATCGAGACGTCAGCTTTCTTCCTCAGCCTTGACGACGAGGCACACGGTTACGACCCTGACAAGCTGAGGTCATTGGACCTGTATGCCAAGTCCCTGCTGCACGGGAAGTGCTATGACAGGTGGTTTGACAAATCTTTCACTCTGATCGCTTATAAGAATGGTAAACTGGGGGTTAATGCAGAACACTCGTGGGCAGACGCTCCCATTATAGGACACATGTGGGAGTATGTCCTAGCAACGGACTGCTTCCTTTTGGGCTACACAGAGGAGGGGCACTGCAAAGGAGACATCAACAAGGGCCTGCCTCTCCCCACCAAACTACAATGGGACATTCCACTGGAGTGCCAGGAGGTCATTGAGGAGTCCTACATGGTTGCCAAGGTGATAGCTGATGACGTGGACTTTCATGGCTGTCTGTTTGATGAGTTTGGGAAAGGCCTGATCAAGAAGAGTAGGACCAGTCCTGATGCCTTCATACAGCTAGCACTACAGCTGGCCCaattcaggGATAAGGGGGAGTTCTGTCTGACGTATGAGGCCTCAATGACCCGGATGTTCCGTGAGGGTAGGACAGAGACGGTTCGCTCCTGCACATCAGAGTCCACAGCCTTTGTCAGAGCCATGGAGGACAAGAACACTGCGGTTTTGATTGAATACCCTCTGTTACTCTGTGGAAAGAGTGCCCAAAAGTTGGACCTCTTCCGGAAGGCCGCAGACAAACACCAGAACATGTACCGTCTGGCCATGACAGGCTCTGGCATCGACAGACACCTCTTCTGTCTCTACATCATGTCTAAGTACCTCAGCATCCACTCACCATTCCtcaaacagGTGTTGTCAGAACCCTGGAGGTTGTCCACTAGTCAGACTCCTCAACAGCAGCTCAACATGGTTGACATAAAGAAGTTTCCCAGATACGTGGGCGCGGGGGGGGGGTTCGGCCCTGTGGCTGATGATGGCTATGGCGTCTCTTACATCATTATAGGAGAGAACCTCATCACATTCCACATCTCCAGCAAGTTTTCCAGCCCTGAAACGGACTCGTACCGCTTTGGACAGAACATTCGACAGGCCATGCTGGACATTCGTGCGCTATTCGACCAAAAAGacaagaaggagaaggagatgtGATGAGAAGACAGTCTGGAAGGTCTTTATAGCCTTCATACCACATTTTTGTGCTCTGTGACTTTACAACATTGTTTCCAAAACGGCTGGTCACGACTAGTCTCTTCTGGGTAGCGACTTTAGACTGGGTTAAGTTATAAAGCTTCTGGATATCTACTCAGAGAGCAGGAGGAATTGCTTTGCAGAAGAATACATATTTAATAAAGCATTTTCACTATTTATATCAGACACTATCCTCTCTATAAAAGGGCAGTGAATTTTGAGTATAGTTTTGAACCGATTCTGGCAAGAGCAATGAAGCACATAATGCCTTGGTGGCATTCATGGTGGCTATTATTAATGTGATTTTGATTGTAGTAGAATGATAAATGAATGTAGCCTTGTAAGGATAGGCCACTCATCTGTTTAGAGAGGTTATAGTATTTGCTTCTGATTGTAATATGTGTACACTTGTATATACCATTGTTTTGAGTATTTTAAGTGTTGTAATATAAGGTTGTATATCGGAATCTGTTATGCTTATGTATTTGTGTTTATTAGTATATTATAATAAAGGATATGTTGATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41264 lncRNA downstream 92628 34552678 ~ 34554757 (-) True G36491
TU41236 lncRNA downstream 125816 34521306 ~ 34521569 (-) True G36471
TU41202 lncRNA downstream 176339 34469826 ~ 34471046 (-) True G36438
TU40922 lncRNA downstream 195615 34368150 ~ 34451770 (-) True G36209
TU40914 lncRNA downstream 199782 34349113 ~ 34447603 (-) True G36202
TU41366 lncRNA upstream 39895 34698799 ~ 34703817 (-) True G36579
TU41372 lncRNA upstream 46996 34705900 ~ 34706163 (-) True G36585
TU41377 lncRNA upstream 54301 34713205 ~ 34808214 (-) False G36588
TU41376 lncRNA upstream 142698 34801602 ~ 34808214 (-) True G36588
TU41470 lncRNA upstream 159425 34818329 ~ 34819021 (-) True G36674
XM_036976498.1 mRNA downstream 157206 34473968 ~ 34490179 (-) False LOC110521764
XM_036976547.1 mRNA upstream 183 34659087 ~ 34664471 (-) True LOC110521923
NM_001124600.1 mRNA upstream 27846 34686750 ~ 34690959 (-) True zp2.3
XR_005041872.1 mRNA upstream 197557 34856461 ~ 34868295 (-) True LOC118947385
XM_021599989.2 mRNA upstream 622381 35281285 ~ 35285817 (-) True LOC110521966
XM_036989454.1 mRNA upstream 627637 35286541 ~ 35287452 (-) True odf3b
TU40907 other downstream 266153 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 284649 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 779340 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1194972 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1538888 33107119 ~ 33108497 (-) True G35075
TU42180 other upstream 614805 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 782014 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 924388 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 1062536 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1711190 36370094 ~ 36409019 (-) True LOC110522187

Expression Profile