RNA id: XM_036976547.1


Basic Information

Item Value
RNA id XM_036976547.1
length 3865
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110521923
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 34659087 ~ 34664471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catagaacaaaaacatcgaatgcccaccccaactcacgccctgaccaacctaaaatagaaacatacaaaaggaactaaggtcaggacgtgacaactaTGCCCAACGTTTAAATGTTTGTCATTTTCCATTTCATACCAAGAACCACAATAGCTAAATAAAACTGTTCATGACTTTGAACAACAGATTTTGTGTCTGAATAAAATGTGCATTTGGACAGTTTGCGTACGCCTAAAGTATTATTTAAACCAAGTGTAATATCATCTGCATGATTTTTAaattcagatccaaagataatgAAAATGGGATCAGGTTGAAAGAAAAGTAATTTTTTTCCTTGGAATGGCAATCATTTGAACACGTCAAAATGTTGTTCAGTATCATTTCTAACGTTGTAAATGATTTAGTATATTTGTTTGCTAAGTGCAGTACCCTCAGTTTTGGTATGTCGGTTATAGTAAAGGTTTCCCTATGAATTGACCCTATGATATCAGAATTAGAATGTATGCTGTGGATGTAGGCCGGTGTTAGATTTTAGAGAATATGAAACTGCCTATTTTAGAAGCCAGTGCGTCATCATCTAGCTTCATTTTTGAGTATTTTACATTACATCTCAATCCTGTCCAAAATCCTCCTGCGGTGTAAATATGATAAATTAACAGCTAATAAACAGGCTTGATACCTGATTGATTATGGATATTCATTTATTGATATGGCAACAGTTCTTTTCACCTTGTACGTGTACTGTAGAAAAACAATACATGTTCAGGAACCAGAGCTCCCCCTAATGGTACAATTCTTAGCAGATTTAGGGGAGTCGTATTTCACACTAGCATACTTAATGCTAATCTGTAAGGATTGGGTAGATATTCAATATGGAAATAGCTACACCTCTTAACTAGGTGGGAGTTTCACTATGTCACTAACATCCATATTTCTTCCTTTCAGTGCATAGAAGGAAGGGGAATGGGGAGTACCTAGGGGTAGGGGCTATGGGTTCATTTGGAATTAGGCACAAGTCCCCCATGATGCCTAAAATAGATCAGTCCTTTAGAGCTGTTTTTCTGCACACAGTTCCATGTAAGCCCTGCTTGGACTGTCTATGGAGAAGAGGCTTTATAACTGACCTTGTCTACTCTCACACGGGGATCGAAGCTGGATTTTGGATTTATGCACGTTTGGGATGTCATTGTTAGGGGTCCAAGCAACATAGTTGCTGTGGACCAATTGCATTTCTTTCTTCTTTTGTGTGGCCACCGGTGTGTGGCATTCAGCTAGTattacagctgctgctgctgctgctggactGTTATCTTATCAGACATGTGACTCTGAGCTGCGATGGATCAGGGAGATAAATTATGATAAGTCATCTCAGACCGTATGTGAAAGTTGTGGTGCTGTGGATCAGCGGGTGGTTGAAGTACGCGTTAGAGAGGGTGTGGAGAATGCCGTTCTCAGTGCCACACACCtgggtgacatcaccaggcaacTCAGGTGAAGGACTGTATGACAGGTTGTCAAAGGAGTGGCTAACCAATGAGGTGTATCGTACCTATCACCATGGAAGTGGAACAATGGTTACAGTCCAGACCAGCACACATGCCTTCTACGTGAACCTTGGtcgactgactgactgtagtgAGTACTTCAGAGCCCTGTCCCAGTCCAGTAtgagagagaccacagagagcCTGATTGTCCTGGATCACATTCCCTCCTCAGTCTTCCATTCCCTCCTAGAATTCTGCTTCCGGAATGACTTCAGCGTTCCCCCGGAGGAGTTGGGAGAACACATCCAAGTGGGCAGCTACCTGCTGGCTGAGGCCTTTGTGTCGCAGTGCCTGTTGGCCCTGTCTGGTGTTCTAACCCCAGACACCTGCctgtcctacctggctctggccCGGGACATCAGCTGTACTGAGATGGAGACGACTGTGTTCTCCTACCTCAGCAGACACCTTCTGGAGCTGTCTCACCTCACCAGGTGTTTGCCGGCTGAAGACAGGGCTGAACTGACCCGTCTGAGGTGGCAGGGTGATCTCCGGCTCTGCTGCGTGAGGAAGGAGAACCTGACCTCCTGGAATGACCTAGAAACAGAAGCCGCCCGCCACCTCTTCACCCTAGATGGATCAGAGGTCACTGGTGACTGGCGTCCACTAACAGAGCTCCCCTTCATGGCTGATAAGTGGTGCTTCACCACGGTGGTTCTACTCAACTACCTCTACCTCATCGGTGGCTACAGGCAGCGGGCCAAGAGGGGCTGGGAGTTCAAAATGGCCTCCTTTAGGTACAACCCCTTCACCAACACCTGGGTCTCCACTGCACCTCTCATCAAGCACAGGAGGCATTTCAGTGCGGTGTCATGTGATGGCTGTATCTATGCTGTGGGAGGCTGGTACTTGGACTCTTTGGTGACTCCGGACTCTAGCACAGCCCTCTACACTGCTGTGGAGCGATACCACCCCAGGGACAACACATGGACGtttgtctcctctctgcctctgactgacttacagttcaccATGTCCCTGTCCCATGACCTCCCTCTGGCCACCAGCCTGGGCTCCCGTCTCTATGTCCTGGGGAACATCCAGAGGACTGGAGAAAAGCTGCTTCTACAGTATGACACCAGGCAAGACTTATGGTCTGAGCTGCTCCCTACCCTAACCAAAGCCAACGCTGACCTCCCCAGCCTCTACTTCCTGGGTGCCACGGACCGGCTGTTTGTGATTGGAGGAAACAACTCAGAGAATGTGGTGACATCATTCTGTGTGGAGTCTGGGAAGTGGGGGCAGGTGAAAGGGGCTGAGAAGGTAGCATTAGCTGGACAAGGGACAGTACTGGGTGACCAGGTGTACATGCCAGGTATAGAACACAACGCTGCTGTAAGGCTGGATCTCCACTCCCTATctctcactgtcctccctcctctacccatcTGCATTCGCTATGAAGCCCTCCTTCACCTTTCCTTCTAAAACAACTTTCATCAATTAGTCTGATTTGACTTGCCTTGCTGTTTctggggtttaggtcagggttTTTTGTTTAGTGCTTCTGGACAAACGCAGACTCATCATCAAGGGGGTCTTTGCTACATGTGGACTTCACCATTCTGTGTCAGCAACAATATGCCTTGTCCTGCTTTCACTCTGCCTTACATGACAACTTTATTAACTTAAGTAGGCCTAATCTACAGGATCTACTCACCGGACCGATTGTCCTCCGGCTTGTGTTCAGTTTGCAAATTACAGCCAAGactgttcagaggtgctaagtactctcgCCAGCAGATGCTAGACAATCCTACCGGTCTGGTCGTCTCTTAAATCTTTACCCGGAGGAGGATGGGCTCCCAATCTCATTTTCTTCTTAGTCAGGTTCCTTTTAAAGGTTTCCTAGGGAGTTTTCCCCAGTAACCACGTTTCCTTCCAGTTTTTATGTGAGTGAAGTTATACCATATAAATTAAAAAAATCACGAGAGCTGtggtggaaacaggaagttttggTACAATTGTATAAATGCCGACAGATCATTTGTGCGTTCGAcgtggtgggatctttttgtgttggtAAGATTCATTATGGCGTTGCAGTGGAAACAACTTAATGCACAAGTATTGATATATTATAACAATATCGAAGGTAACCTGGAGGCACGtgtgatgatatggtgtgtggtcctacTACTAAGACTCGGGAaatcatgcagtttattaggatgcagatgaaataagttatgatgaattTCACAACAGTGTGCGGTGATGAGTTTGATGCGCCTTTCCAATAAATGTTGAGtgtgacatgatgattgatgcttgactgccatttgacaaataaagaTATTCGgtctcttatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41264 lncRNA downstream 104330 34552678 ~ 34554757 (-) True G36491
TU41236 lncRNA downstream 137518 34521306 ~ 34521569 (-) True G36471
TU41202 lncRNA downstream 188041 34469826 ~ 34471046 (-) True G36438
TU40922 lncRNA downstream 207317 34368150 ~ 34451770 (-) True G36209
TU40914 lncRNA downstream 211484 34349113 ~ 34447603 (-) True G36202
TU41366 lncRNA upstream 34328 34698799 ~ 34703817 (-) True G36579
TU41372 lncRNA upstream 41429 34705900 ~ 34706163 (-) True G36585
TU41377 lncRNA upstream 48734 34713205 ~ 34808214 (-) False G36588
TU41376 lncRNA upstream 137131 34801602 ~ 34808214 (-) True G36588
TU41470 lncRNA upstream 153858 34818329 ~ 34819021 (-) True G36674
XM_036984421.1 mRNA downstream 183 34647385 ~ 34658904 (-) False cpt1
XM_036985287.1 mRNA downstream 183 34647385 ~ 34658904 (-) False cpt1
XM_036985693.1 mRNA downstream 183 34647385 ~ 34658904 (-) False cpt1
XM_036986625.1 mRNA downstream 183 34647385 ~ 34658904 (-) False cpt1
NM_001124735.1 mRNA downstream 774 34647826 ~ 34658313 (-) True cpt1
NM_001124600.1 mRNA upstream 22279 34686750 ~ 34690959 (-) True zp2.3
XR_005041872.1 mRNA upstream 191990 34856461 ~ 34868295 (-) True LOC118947385
XM_021599989.2 mRNA upstream 616814 35281285 ~ 35285817 (-) True LOC110521966
XM_036989454.1 mRNA upstream 622070 35286541 ~ 35287452 (-) True odf3b
XM_036973693.1 mRNA upstream 649482 35313953 ~ 35315936 (-) False LOC110520384
TU40907 other downstream 277855 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 296351 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 791042 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1206674 33442368 ~ 33452413 (-) True G35299
TU39673 other downstream 1550590 33107119 ~ 33108497 (-) True G35075
TU42180 other upstream 609238 35273709 ~ 35278005 (-) True G37310
TU42883 other upstream 776447 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 918821 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 1056969 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1705623 36370094 ~ 36409019 (-) True LOC110522187

Expression Profile