RNA id: XM_021599989.2


Basic Information

Item Value
RNA id XM_021599989.2
length 2720
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110521966
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35281285 ~ 35285817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTTCAGCCAATAATAGGAAGCATCATCTTTAAAAAAGTGGGCCTTCACGCGTCAGCGTTGCATAGAAACAGACTTTCTCTATGGAAGCCGTTGCTACAAGAACATGAATATATATTTTCAGGCAATAATAGGAACAGCCACGTTAAAAAAGGGGGCCTTCAAGCGTCTGCGTTGCATAGAAACAAACATTTTCTATAGAAGCTGTTGTTACAAGAacatgctagctaactagctacaatgTTTTGACGTTTTTCCATCGATAGCTACGTTAATGTTTTGATGCTTATTTTGCTAGACCATTGACAGCTAAATAGGGTTGTTAGATATAGCCAAACATCAAATGTCCCTGACTGGATGTAACGTTAAGCATTAGCTACATTTTATCTACAGTTAACTAGTTAGATAAGTCAAGTAGCCACTGGCTAGATAACCAACGAGTTGAAAACATAACGTTACCCGTTTCGCTAGTTTAGCTAATAAGTTAGTTTAGACATATGACTTCGAATGGGGTTGAGTCATATTTTAAGTGAATAACTTAACAGTTACATGCCAATGTGTGTCGCGATAACGTTAAGCGGTTTAATTTAGCTAGCTCAGGAGCTAGCGTTAGTGTAATCACAGACTAAGTGTATTCGGTCATCTTGttcctagctaaagttagctagctatctagttgGAAGTTAACTAAGCCGCTGTGCGACGCAGCTGATTTCCCCATCCCGAAGGAAGGATGGCAAGCGACGCCAATGGCATTCCTGAACTGGACCAAGATAAATATGATGCAGATGAACAAGTGAAGATCATCTGCCTTGGGGACAGTGCAGTGGGGAAATCCAAGTTGATGGAGAGGTTCCTGATTGACGGATATCGTCCCCAGCAGCTGTCAACCTATGCTCTGACACTCTACAAATACAATACCACCATTGACAGAAAGGCTGTATTAGTAGACTTCTGGGATACTGCTGGACAGGAGCGGTTCCAGAGCATGCATCCCTCGTACTACCACAAAGCTCACGCCTGTATCATGGTGTTTGACGTGCAGAGGAAGATCACCTATAAGAACCTGACCAATTGGTACACAGAGCTGAGAGAGTACAGGCCTGAGATCCCCTGCGTTGTGGTGGCTAACAAGATAGATGCTGATATGAAGGTGACCCAGAGGAACTTTAACTTTGCCAAGAAGCAGGGACTTCCTTTGTACTTTGTATCAGCTGCTGATGGGACCAATGTGGTCAAGATGTTTAAAGAAACAATCAAGATGGCGATGTCGTACAAGCAGAACTCTAGTGACTTCATGGATGAAGTGATGCGGGAGCTAGAGAACTTTGAGCTGGAGCAGAACAAGGATTTGTCGTTACAGACGGCTCAGAAGGGACTGAAACCAGAGAGCTCGGAGTCTGTCTGACTGGATGTTGATACATTATCCTCACGTTATCTTTACATTATACTGACGTTGTGAACACAAGCTCTGATTTGGACTACAGTGCAGCTATGGACACTGGATATGTTATCCAGATAGTGTTGACGTTTTACTAGTCTACCATGGGAGAGCCTTGCTCCTGAATACCTGACGTTGTGGATATGTTATATTCATGTTATTCTCACTTTGTGGAAATGTTATCCTTACATTCTCCTCATGTGTGTATTTTATGCCATGAGAGAGCCATGCTTCTGTGGGACTGATGCTATGGAAATGTGAACCTTTGACCCATATAATAATAGTGACCTGTGAGAACTGGGGAAATCTATTGATGTGAGAACAAACATACTGTAGGAAACATGTTGTCAGGCAGGTGAAATGTCTGCATAAGTGTGTGAAGCAGGCTTGTTATTTGAGGTGAACTAGAATGTGAAGCTTTGTAAAATGTGGGGCACACACAATACTTATCATTCCTATTTGGGCTATTTTTGGAGAGCAAAGTGAAACTGTGAATGTGAACTCTCTTTGCCACTTGTGATTTTGTCATCAGCTTTTGCTCTCTGAGGCTTTTACATGAGGATTTGTTCAATGTAAGGTGATAGTGGGGTACATGTATGTAAAGGCTGCTGTTGTTGCTCTTAAGTGCTACAATGTAAAGCCAGAGCTTTTATGCCATGTCTTTTAATGTATTTTAAACAATGAATGTACCTTGTAACCATGTGACGGCACTAGCGACTGTTAGATATTTCAGTGTGGTTTCAAACCTCAGTACTTGCTACCTGACATGGCTAGGCTGCATCAATGTCACCAGTAATTAATTCCAGTGCAGTTATCGATCAATGTACAAGTTagatatacgtgtgtgtgtgtgtatatatatatatatatatatatatatgatagtcAACTGGAAGTGTTGCAGAAGTACTGAAGATAGCTCAGAACTACAATGACTGACCACTTCTGAGAGGTTCACAATCTAGGTGTAGTAGAACTCCAAGGCCTGTATTCTATGTCACTGAAGTGTTAGAATGCCTTCATGTTTAAATCACTCGGAACTCCTGCAAtatggattgaatagagcccttaatgTTCTCTGTGGAAAatccacattttttaaaatctgtaTGATATCCTATGAACTGCGATTTAAAAAAAGGATCATTTCAAGACATACTATGTCTATTTGATGTGCTTCCCTCAGGGTATTAACCCTGGTTATTAGTGGAATTTCAACCTccaataaataaacattttataATCACAGCTCAAATGTACACAATCAATTATTTGGAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07931 RABL2; Rab-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42058 lncRNA downstream 169990 35110630 ~ 35111295 (-) True G37196
TU42044 lncRNA downstream 189910 35091116 ~ 35091375 (-) True G37184
TU42041 lncRNA downstream 196059 35084985 ~ 35085226 (-) True G37181
TU42040 lncRNA downstream 196365 35084576 ~ 35084920 (-) True G37180
TU42038 lncRNA downstream 198310 35082632 ~ 35082975 (-) True G37178
TU42192 lncRNA upstream 13516 35299333 ~ 35299619 (-) True G37322
TU42193 lncRNA upstream 14361 35300178 ~ 35300431 (-) True G37323
TU42200 lncRNA upstream 27002 35312819 ~ 35313055 (-) True G37329
TU42877 lncRNA upstream 138423 35424240 ~ 35424504 (-) True G37901
TU42857 lncRNA upstream 147977 35433794 ~ 35435084 (-) True LOC110532260
XR_005041872.1 mRNA downstream 412990 34856461 ~ 34868295 (-) True LOC118947385
NM_001124600.1 mRNA downstream 590326 34686750 ~ 34690959 (-) True zp2.3
XM_036976547.1 mRNA downstream 616814 34659087 ~ 34664471 (-) True LOC110521923
XM_036984838.1 mRNA downstream 621132 34647385 ~ 34660153 (-) False cpt1
XM_036986122.1 mRNA downstream 621133 34647385 ~ 34660152 (-) False cpt1
XM_036989454.1 mRNA upstream 724 35286541 ~ 35287452 (-) True odf3b
XM_036973693.1 mRNA upstream 28136 35313953 ~ 35315936 (-) False LOC110520384
XM_036973075.1 mRNA upstream 28136 35313953 ~ 35316025 (-) False LOC110520384
XM_021597707.2 mRNA upstream 28136 35313953 ~ 35316192 (-) True LOC110520384
LOC110532260 mRNA upstream 148978 35434795 ~ 35694776 (-) False LOC110532260
TU42180 other downstream 3280 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 900053 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 918549 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 1413240 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1828872 33442368 ~ 33452413 (-) True G35299
TU42883 other upstream 155101 35440918 ~ 35441328 (-) True G37907
TU42957 other upstream 297475 35583292 ~ 35583608 (-) True G37976
TU43028 other upstream 435623 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 1084277 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 1222721 36508538 ~ 36510829 (-) True G38855

Expression Profile